Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	421,409	T→C	G400G (GGT→GGC)	proY →	proline permease transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	421,409	0	T	C	100.0%	728.1 / NA	212	G400G (GGT→GGC)	proY	proline permease transport protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (103/109); total (103/109)

Only 100 of 219 total aligned reads displayed.

GGTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGTGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTA  >  NC_000913/421319‑421498

ggtgtggATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCgg                                                                                          <  2:3048701/93‑1 (MQ=255)

  tgtggATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCgggg                                                                                        <  1:5203687/93‑1 (MQ=255)

      gATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAgg                                                                                    >  2:1300798/1‑92 (MQ=255)

       aTTATGATCCTGCTGTCGCACATCGCCTTCCGTCGCCGTCTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCa                                                                                   <  2:1459755/93‑1 (MQ=255)

        ttATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCaa                                                                                  <  1:6108586/93‑1 (MQ=255)

        ttATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCaa                                                                                  <  1:5499433/93‑1 (MQ=255)

        ttATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCaa                                                                                  <  1:5123246/93‑1 (MQ=255)

        ttATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCaa                                                                                  >  2:403968/1‑93 (MQ=255)

        ttATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCaa                                                                                  <  2:4762255/93‑1 (MQ=255)

        ttATGATCCTGCTGACGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCaa                                                                                  >  2:3944502/1‑93 (MQ=255)

          aTGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACg                                                                                >  2:2857257/1‑93 (MQ=255)

          aTGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACg                                                                                >  1:5632825/1‑93 (MQ=255)

            gATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGAc                                                                              >  2:5568516/1‑93 (MQ=255)

            gATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGAc                                                                              <  1:3292211/93‑1 (MQ=255)

                ctgctgTCGCAAATTGCCTTCCGTCGCCGTGTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATc                                                                          <  2:481552/93‑1 (MQ=255)

                 tgctgTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATcg                                                                         <  1:3036724/93‑1 (MQ=255)

                   ctgTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATcggc                                                                       >  2:196188/1‑93 (MQ=255)

                   ctgTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATcggc                                                                       <  1:902465/93‑1 (MQ=255)

                   ctgTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATcggc                                                                       <  1:1263067/93‑1 (MQ=255)

                    ggTCGCAAATTGCCTTCCGTCGCCGTTTGCAGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAAAGACCATcggcg                                                                      <  2:5659042/92‑1 (MQ=255)

                      tCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCggg                                                                    >  2:2804404/1‑93 (MQ=255)

                        gCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCt                                                                  <  1:5925531/93‑1 (MQ=255)

                           aaTTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGGTggt                                                               >  2:6169139/1‑91 (MQ=255)

                           aaTTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGAt                                                               <  1:4422492/93‑1 (MQ=255)

                           aaTTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGAt                                                               >  2:1652489/1‑93 (MQ=255)

                            aTTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGtt                                                              >  1:2557833/1‑93 (MQ=255)

                             ttGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGAttt                                                             <  1:3547275/93‑1 (MQ=255)

                               gCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTc                                                           >  1:2791013/1‑93 (MQ=255)

                               gCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTc                                                           >  1:2688641/1‑93 (MQ=255)

                                ccTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTcc                                                          >  1:2186105/1‑93 (MQ=255)

                                 cTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCt                                                         >  2:4007726/1‑93 (MQ=255)

                                 cTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCt                                                         >  1:3149231/1‑93 (MQ=255)

                                 cTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCt                                                         <  2:3135092/93‑1 (MQ=255)

                                 cTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCt                                                         <  2:6386710/93‑1 (MQ=255)

                                  ttCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTTCTg                                                        >  1:3063677/1‑93 (MQ=255)

                                  ttCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTg                                                        <  1:5795865/93‑1 (MQ=255)

                                  ttCCGTCGCCGTGTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTg                                                        <  1:4640012/93‑1 (MQ=255)

                                      gTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGGTGATTTTTCTGctct                                                    >  2:2714879/1‑93 (MQ=255)

                                       tCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGctcct                                                   >  2:5393361/1‑91 (MQ=255)

                                         gCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTTCTGCTCtttt                                                 >  1:4007962/1‑92 (MQ=255)

                                         gCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTtta                                                 <  2:1540424/93‑1 (MQ=255)

                                         gCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCCCtttt                                                 >  1:3577032/1‑92 (MQ=255)

                                          ccGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTttat                                                >  1:1087711/1‑93 (MQ=255)

                                           cGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTttatt                                               <  2:4225387/93‑1 (MQ=255)

                                           cGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTttatt                                               <  1:4891273/93‑1 (MQ=255)

                                           cGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTAATTTTCCTGCTCTttatt                                               <  1:6349407/93‑1 (MQ=255)

                                            gTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGGCCATCGGCGGGCTGATTTTCCTGCTCTttatta                                              <  1:1043522/93‑1 (MQ=255)

                                            gTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCCGATTTTCCTGCTCTttatta                                              >  1:4309473/1‑93 (MQ=255)

                                             tttGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTtttta‑t                                            >  1:1821328/1‑93 (MQ=255)

                                             tttGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTtatta‑t                                            <  1:835370/93‑1 (MQ=255)

                                             tctgctgcCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGTTAGCAGCGACCATCGGCGGGCTGATTTTCCTGCTCCTtatta‑t                                            <  2:4917573/91‑1 (MQ=255)

                                              ttGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTTCTTCTCttttttttt                                            >  2:1182734/1‑90 (MQ=255)

                                                gccgccAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCgg                                         <  2:5288629/93‑1 (MQ=255)

                                                  cgcgAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGt                                       <  1:1593538/93‑1 (MQ=255)

                                                  cgccAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGt                                       <  2:2459977/93‑1 (MQ=255)

                                                   gccAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGtt                                      <  1:2949753/93‑1 (MQ=255)

                                                   gccAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGtt                                      <  2:621514/93‑1 (MQ=255)

                                                    ccAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTCCTGCTCTTTATTATTCGGGtt                                      >  2:5238222/1‑93 (MQ=255)

                                                    ccAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTg                                     <  1:4449913/93‑1 (MQ=255)

                                                     cAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGa                                    >  1:3690980/1‑93 (MQ=255)

                                                     cAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGGTgt                                    >  2:2585563/1‑92 (MQ=255)

                                                      agaagaAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTT‑TCTGGTTGAt                                   >  2:4845769/1‑93 (MQ=255)

                                                       gaagaaGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGAtt                                  <  1:3114310/93‑1 (MQ=255)

                                                        aagaagTTAAGGCTCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTg                                 <  1:4480641/93‑1 (MQ=255)

                                                        aagaagTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTg                                 <  2:4273114/93‑1 (MQ=255)

                                                        aagaagTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTg                                 <  1:2418905/93‑1 (MQ=255)

                                                         agaagTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTGCTGCTCTTTATTA‑TCGGGGTGAGTgg                                >  2:1939022/1‑93 (MQ=255)

                                                         agaagTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTgg                                <  1:2137335/93‑1 (MQ=255)

                                                         agaagTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTgg                                <  2:6123065/93‑1 (MQ=255)

                                                          gaagTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCCGGTTGATTGGt                               >  1:3886745/1‑93 (MQ=255)

                                                            agTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGttt                             >  1:631027/1‑92 (MQ=255)

                                                            agTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTa                             <  2:3620348/93‑1 (MQ=255)

                                                             gTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTAGTTAt                            >  2:3197885/1‑93 (MQ=255)

                                                             gTTAAGGCGCTGAAATTTAAAGTGCCAGGCGGGGTAGCAACGACCATCGGCGGGCGGATTTTCCTGCTCTTTTTTA‑TAGGGTTGATTGGTTAt                            >  1:2057563/1‑93 (MQ=255)

                                                              ttAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATc                           <  2:3011321/93‑1 (MQ=255)

                                                              ttAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATc                           <  2:2136078/93‑1 (MQ=255)

                                                              ttAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGGTGATTGGTTATc                           >  1:4051006/1‑93 (MQ=255)

                                                              ttAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCCGCTCTTTATTA‑TCGGGTTGATTGGTTATc                           <  2:414335/93‑1 (MQ=255)

                                                               tAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCa                          <  1:4950461/93‑1 (MQ=255)

                                                                  ggCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCAccc                       <  2:1398190/93‑1 (MQ=255)

                                                                   gcgcTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCg                      <  1:2524863/93‑1 (MQ=255)

                                                                     gcTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGa                    <  2:3850459/93‑1 (MQ=255)

                                                                     gcTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGa                    >  2:4391185/1‑93 (MQ=255)

                                                                      cTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGCTCTTTATTA‑TCGGGGTGATTTGTTATCACCCCGAt                   >  2:378373/1‑93 (MQ=255)

                                                                          aaTTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGCTCTTTATTA‑TTGGGTTGATTGGTTATCACCCCGATAcgc               >  2:3445957/1‑93 (MQ=255)

                                                                          aaTTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCCCTTTATTA‑TCGGGTTGATTGGTTTTTACCCGGATaacc               >  1:5449543/1‑90 (MQ=255)

                                                                            tttAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGCTCTTTATTA‑TCTGGTTGATTGGTTATCACCCGGATACGCGt             >  1:1735147/1‑93 (MQ=255)

                                                                            tttAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGt             <  1:1017814/93‑1 (MQ=255)

                                                                            tttAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGGTGATTGGTTATTACCCCGGTACGCGt             >  1:1935106/1‑93 (MQ=255)

                                                                             ttAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTa            <  2:4377161/93‑1 (MQ=255)

                                                                              tAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCAACCGGATACGCGTAt           >  2:6065869/1‑93 (MQ=255)

                                                                                aaGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTCCTGCTCTTTATTA‑TCGGGGTGATTTGGTATTACCCGGATACGCGTGtct         >  1:3430068/1‑93 (MQ=255)

                                                                                aaGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGGTGATTGGTTATCACCCCGATACGCGTAtct         >  1:1363703/1‑93 (MQ=255)

                                                                                 aGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTAtctc        <  1:6404410/93‑1 (MQ=255)

                                                                                  gTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCg       <  1:4428311/93‑1 (MQ=255)

                                                                                  gTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGGTGATTGGTTATCACCCGGATACGCGTATCTCg       >  1:599305/1‑93 (MQ=255)

                                                                                  gTGCCGGGCGGCGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCg       <  2:2970756/93‑1 (MQ=255)

                                                                                   tGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGc      <  2:1280581/93‑1 (MQ=255)

                                                                                    gCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCt     <  1:4243051/93‑1 (MQ=255)

                                                                                    gCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCt     >  2:1780111/1‑93 (MQ=255)

GGTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGTGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA‑TCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTA  >  NC_000913/421319‑421498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGGTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGTGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTATGTC  >  NC_000913/421317‑421502

TGGGTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCG                                                                                              >  SRR4302537.6060002/1‑94 (MQ=60)

 GGGTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGG                                                                                             >  SRR4302537.3743619/1‑94 (MQ=60)

   GTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGG                                                                                           <  SRR4302537.3102022/94‑1 (MQ=60)

    TGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGT                                                                                          <  SRR4302537.90093/94‑1 (MQ=60)

    TGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGT                                                                                          <  SRR4302537.5239479/94‑1 (MQ=60)

    TGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGT                                                                                          <  SRR4302537.2742610/94‑1 (MQ=60)

     GTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTA                                                                                         <  SRR4302537.4100104/94‑1 (MQ=60)

       GGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGC                                                                                       >  SRR4302537.4487230/1‑94 (MQ=60)

          TTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAAC                                                                                    <  SRR4302537.5158555/94‑1 (MQ=60)

          TTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAAC                                                                                    <  SRR4302537.6150562/94‑1 (MQ=60)

          TTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAAC                                                                                    <  SRR4302537.5536987/94‑1 (MQ=60)

           TATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACG                                                                                   >  SRR4302537.5671362/1‑94 (MQ=60)

            ATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGGAGCAACGA                                                                                  >  SRR4302537.21914/1‑94 (MQ=60)

             TGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGAC                                                                                 >  SRR4302537.5620242/1‑94 (MQ=60)

              GATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACC                                                                                <  SRR4302537.3315472/94‑1 (MQ=60)

                 CCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATC                                                                             <  SRR4302537.2131252/94‑1 (MQ=60)

                  CTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCG                                                                            >  SRR4302537.5750318/1‑94 (MQ=60)

                   TGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGG                                                                           >  SRR4302537.4446414/1‑94 (MQ=60)

                   TGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGG                                                                           <  SRR4302537.3057891/94‑1 (MQ=60)

                   TGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGG                                                                           <  SRR4302537.2154838/94‑1 (MQ=60)

                    GCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGC                                                                          >  SRR4302537.1176858/1‑94 (MQ=60)

                     CTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCG                                                                         <  SRR4302537.908696/94‑1 (MQ=60)

                     CTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCG                                                                         <  SRR4302537.1271852/94‑1 (MQ=60)

                     CTGTCGCAAATTGCCTTCCGTCGCCGTATGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCG                                                                         <  SRR4302537.5642739/94‑1 (MQ=60)

                        TCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGC                                                                      <  SRR4302537.4057859/94‑1 (MQ=60)

                         CGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCT                                                                     >  SRR4302537.2457163/1‑94 (MQ=60)

                         CGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCT                                                                     <  SRR4302537.3632125/94‑1 (MQ=60)

                          GCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTG                                                                    <  SRR4302537.5966195/94‑1 (MQ=60)

                             AATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTT                                                                 >  SRR4302537.2575761/1‑94 (MQ=60)

                             AATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATT                                                                 <  SRR4302537.4453036/94‑1 (MQ=60)

                              ATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGTGCGGGGTAGCAACGACCATCGGCGGGGTGGTTT                                                                >  SRR4302537.5878069/1‑94 (MQ=60)

                               TTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTT                                                               >  SRR4302537.4724754/1‑94 (MQ=60)

                               TTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTT                                                               <  SRR4302537.3572334/94‑1 (MQ=60)

                                TGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTC                                                              >  SRR4302537.2707404/1‑94 (MQ=60)

                                TGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTC                                                              <  SRR4302537.80243/94‑1 (MQ=60)

                                TGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTC                                                              >  SRR4302537.2810523/1‑94 (MQ=60)

                                TGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTC                                                              >  SRR4302537.1638359/1‑94 (MQ=60)

                                TGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTC                                                              <  SRR4302537.1805861/94‑1 (MQ=60)

                                 GCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCC                                                             >  SRR4302537.2201506/1‑94 (MQ=60)

                                  CCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCT                                                            >  SRR4302537.4675793/1‑94 (MQ=60)

                                  CCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCT                                                            >  SRR4302537.3171320/1‑94 (MQ=60)

                                   CTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTTCTG                                                           >  SRR4302537.3085020/1‑94 (MQ=60)

                                   CTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTtctt                                                           >  SRR4302537.1661688/1‑90 (MQ=60)

                                    TTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGC                                                          >  SRR4302537.1032972/1‑94 (MQ=60)

                                    TTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGC                                                          >  SRR4302537.5187955/1‑94 (MQ=60)

                                    TTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGC                                                          <  SRR4302537.5835602/94‑1 (MQ=60)

                                    TTCCGTCGCCGTGTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGC                                                          <  SRR4302537.4672096/94‑1 (MQ=60)

                                       CGTCGCCGTTTGCCGCCAGAAGAAGGTAAGGCGCTGAAATTTAAAGTGCCGTGCGGGGTAGCAACGACCATCGGCGGGGTGGTTTTTCTGTTCT                                                       >  SRR4302537.2316864/1‑94 (MQ=60)

                                         TCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTT                                                     <  SRR4302537.2561279/94‑1 (MQ=60)

                                          CGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTTCTGCTCTTTT                                                    >  SRR4302537.4036017/1‑94 (MQ=60)

                                          CGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCCCTTTT                                                    >  SRR4302537.3602251/1‑94 (MQ=60)

                                           GCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTAT                                                   >  SRR4302537.4940298/1‑94 (MQ=60)

                                           GCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTAT                                                   >  SRR4302537.1095220/1‑94 (MQ=60)

                                            CCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATT                                                  <  SRR4302537.4520800/94‑1 (MQ=60)

                                             CGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTA                                                 <  SRR4302537.4925048/94‑1 (MQ=60)

                                             CGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTAATTTTCCTGCTCTTTATTA                                                 <  SRR4302537.6392763/94‑1 (MQ=60)

                                             CGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCCGATTTTCCTGCTCTTTATTA                                                 >  SRR4302537.4339426/1‑94 (MQ=60)

                                              GTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGGCCATCGGCGGGCTGATTTTCCTGCTCTTTATTAT                                                <  SRR4302537.1050725/94‑1 (MQ=60)

                                              GTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTTTTAT                                                >  SRR4302537.1834025/1‑94 (MQ=60)

                                               TTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATC                                               <  SRR4302537.329096/94‑1 (MQ=60)

                                               TTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATC                                               <  SRR4302537.841085/94‑1 (MQ=60)

                                                 TGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGG                                             <  SRR4302537.1440401/94‑1 (MQ=60)

                                                  GCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGG                                            >  SRR4302537.6061603/1‑94 (MQ=60)

                                                   CCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGT                                           <  SRR4302537.3419487/94‑1 (MQ=60)

                                                    CGCGAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTT                                          <  SRR4302537.1604676/94‑1 (MQ=60)

                                                     GCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCTGGTTG                                         >  SRR4302537.2904001/1‑94 (MQ=60)

                                                     GCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTG                                         <  SRR4302537.2970449/94‑1 (MQ=60)

                                                     GCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTG                                         >  SRR4302537.6410514/1‑94 (MQ=60)

                                                     GCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTG                                         <  SRR4302537.2986880/94‑1 (MQ=60)

                                                      CCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTcattgttgcgctcgttgttatctcgcggt                                        >  SRR4302537.311441/1‑65 (MQ=60)

                                                      CCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGA                                        >  SRR4302537.3716951/1‑94 (MQ=60)

                                                      CCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGA                                        <  SRR4302537.4480645/94‑1 (MQ=60)

                                                      CCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGGTGA                                        >  SRR4302537.3174758/1‑94 (MQ=60)

                                                      CCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGCAGCAACGACCATCGGCGGGCTGATTTTCCTGGTCTTTTTTATCGGGTTGT                                        >  SRR4302537.1079889/1‑94 (MQ=60)

                                                        AGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTTGTTATTATCGGGTTTATT                                      >  SRR4302537.4316970/1‑94 (MQ=60)

                                                         GAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGGCGGTTTTCCTGCTCTTTATTATCGGGGTGATTT                                     >  SRR4302537.4476811/1‑94 (MQ=60)

                                                         GAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTG                                     <  SRR4302537.3136061/94‑1 (MQ=60)

                                                         GAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTG                                     >  SRR4302537.4351928/1‑94 (MQ=60)

                                                          AAGAAGTTAAGGCTCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGG                                    <  SRR4302537.4511638/94‑1 (MQ=60)

                                                          AAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGG                                    <  SRR4302537.2435952/94‑1 (MQ=60)

                                                          AAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGGTGATTGG                                    >  SRR4302537.5436703/1‑94 (MQ=60)

                                                           AGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGT                                   <  SRR4302537.2152382/94‑1 (MQ=60)

                                                           AGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCCGGTTGATTGGT                                   >  SRR4302537.3913933/1‑94 (MQ=60)

                                                             AAGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTT                                 >  SRR4302537.635317/1‑94 (MQ=60)

                                                              AGTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTAT                                >  SRR4302537.372325/1‑94 (MQ=60)

                                                              AGTTAAGGCGCTGAAATTTAAAGTGCCAGGCGGGGTAGCAACGACCATCGGCGGGCGGATTTTCCTGCTCTTTTTTATAGGGTTGATTGGTTAT                                >  SRR4302537.2072007/1‑94 (MQ=60)

                                                               GTTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGGTGATTGGTTATC                               >  SRR4302537.4079332/1‑94 (MQ=60)

                                                                TTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTCCTGCTCTTTATTATCGGGTTGATTGGTTTTCA                              >  SRR4302537.4002657/1‑94 (MQ=60)

                                                                TTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCA                              <  SRR4302537.4454843/94‑1 (MQ=60)

                                                                TTAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCA                              <  SRR4302537.3074121/94‑1 (MQ=60)

                                                                 TAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCAccgctgggcgggtttttctcctcttttttgctgggtttgtgggtcagtac                             >  SRR4302537.840980/1‑44 (MQ=60)

                                                                 TAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCAC                             <  SRR4302537.6389417/94‑1 (MQ=60)

                                                                 TAAGGCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCAC                             <  SRR4302537.4984604/94‑1 (MQ=60)

                                                                  AAGGCGCTGAAATTTAAAGTGCCGGGCGGGGCAGCAACGACCATCGGCGGGCTGAagttcccgcactttattttccggcttatttattatcccc                            >  SRR4302537.4988043/1‑55 (MQ=60)

                                                                   AGGGGCTGAAAGTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCC                           <  SRR4302537.3455074/94‑1 (MQ=60)

                                                                     GCGCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGG                         <  SRR4302537.2542587/94‑1 (MQ=60)

                                                                       GCTGAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCCGGGTGATTGGTTATCACCCCGAT                       >  SRR4302537.2740670/1‑94 (MQ=60)

                                                                          GAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCCGCTCTTTTTTATCGGGgttgttgggtttcaccccgatacc                    >  SRR4302537.5515285/1‑70 (MQ=60)

                                                                          GAAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACG                    <  SRR4302537.1978457/94‑1 (MQ=60)

                                                                           AAATTTAAAGTGCCGGGCGTGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGC                   <  SRR4302537.1847750/94‑1 (MQ=60)

                                                                           AAATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCCCTTTATTATCGGGTTGATTGGTTTTTACCCGGATAacc                   >  SRR4302537.5486716/1‑91 (MQ=60)

                                                                             ATTTAAAGTGCCGGGCGGGGTAGCAACGCCCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGT                 <  SRR4302537.6259907/94‑1 (MQ=60)

                                                                             ATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGCTCTTTATTATCTGGTTGATTGGTTATCACCCGGATACGCGT                 >  SRR4302537.1747250/1‑94 (MQ=60)

                                                                             ATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGT                 <  SRR4302537.1368954/94‑1 (MQ=60)

                                                                             ATTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGGTGATTGGTTATTACCCCGGTACGCGT                 >  SRR4302537.1948565/1‑94 (MQ=60)

                                                                              TTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTA                >  SRR4302537.6296578/1‑94 (MQ=60)

                                                                              TTTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTA                <  SRR4302537.1024824/94‑1 (MQ=60)

                                                                               TTAAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTAT               <  SRR4302537.3166636/94‑1 (MQ=60)

                                                                                 AAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGGTTTTCCTGCTCTTTATTATCGGGGTGATTTGGTATTACCCGGATACGCGTGTCT             >  SRR4302537.3454343/1‑94 (MQ=60)

                                                                                 AAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCT             <  SRR4302537.5986943/94‑1 (MQ=60)

                                                                                 AAAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGGTGATTGGTTATCACCCCGATACGCGTATCT             >  SRR4302537.1373200/1‑94 (MQ=60)

                                                                                  AAGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTC            <  SRR4302537.2638689/94‑1 (MQ=60)

                                                                                   AGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCG           <  SRR4302537.6448001/94‑1 (MQ=60)

                                                                                   AGTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGGTGATTGGTTATCACCCGGATACGCGTATCTCG           >  SRR4302537.603405/1‑94 (MQ=60)

                                                                                    GTGCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGC          <  SRR4302537.4458893/94‑1 (MQ=60)

                                                                                      GCCGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTG        <  SRR4302537.4272546/94‑1 (MQ=60)

                                                                                        CGGGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTTCTGCTCTTTATTATCGGGTTGATTGGTTATTACCCGGATACGCGTATCTCGCTGTA      >  SRR4302537.3574025/1‑94 (MQ=60)

                                                                                          GGCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTATG    <  SRR4302537.3679849/94‑1 (MQ=60)

                                                                                           GCGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTATGT   <  SRR4302537.1107408/94‑1 (MQ=60)

                                                                                            CGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTATGTC  <  SRR4302537.4363897/94‑1 (MQ=60)

                                                                                            CGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTATGTC  >  SRR4302537.6404796/1‑94 (MQ=60)

TGGGTGTGGATTATGATCCTGCTGTCGCAAATTGCCTTCCGTCGCCGTTTGCCGCCAGAAGAAGTTAAGGCGCTGAAATTTAAAGTGCCGGGTGGGGTAGCAACGACCATCGGCGGGCTGATTTTCCTGCTCTTTATTATCGGGTTGATTGGTTATCACCCGGATACGCGTATCTCGCTGTATGTC  >  NC_000913/421317‑421502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`