Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	513,506	A→G	E97G (GAG→GGG)	ybbI →	putative transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	513,506	0	A	G	100.0%	720.8 / NA	208	E97G (GAG→GGG)	ybbI	putative transcriptional regulator
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (111/97); total (111/97)

Only 100 of 221 total aligned reads displayed.

TGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGAGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCT  >  NC_000913/513416‑513595

tGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAACCGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGc                                                                                         <  1:4467274/93‑1 (MQ=255)

tGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGc                                                                                         <  2:2492254/93‑1 (MQ=255)

tGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGc                                                                                         >  1:6460040/1‑93 (MQ=255)

tGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGc                                                                                         <  1:1961263/93‑1 (MQ=255)

 gAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCt                                                                                        <  1:1349662/93‑1 (MQ=255)

   aTCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGc                                                                                      >  1:3425778/1‑93 (MQ=255)

   aTCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGc                                                                                      >  1:826399/1‑93 (MQ=255)

      tGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAAt                                                                                   <  2:2943939/93‑1 (MQ=255)

      tGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAAt                                                                                   <  2:5946589/93‑1 (MQ=255)

        tttAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATcc                                                                                 <  1:4623919/93‑1 (MQ=255)

        tttAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATcc                                                                                 >  2:1477735/1‑93 (MQ=255)

         ttAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCa                                                                                >  1:53847/1‑93 (MQ=255)

          tAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCAt                                                                               >  2:4939193/1‑93 (MQ=255)

          tAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCAt                                                                               >  2:2624216/1‑93 (MQ=255)

              gACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATgcgc                                                                           >  2:183632/1‑93 (MQ=255)

              gACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATgcgc                                                                           >  1:118832/1‑93 (MQ=255)

               gcccGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGcgcg                                                                          <  1:614175/92‑1 (MQ=255)

                cccGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGa                                                                         >  1:5734136/1‑93 (MQ=255)

                cccGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGa                                                                         >  2:3514338/1‑93 (MQ=255)

                 ccGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGAc                                                                        >  2:2792447/1‑93 (MQ=255)

                 ccGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGAc                                                                        >  2:3848077/1‑93 (MQ=255)

                 ccGCAGAGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGAc                                                                        <  1:1443435/93‑1 (MQ=255)

                   gCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCa                                                                      >  1:2902744/1‑93 (MQ=255)

                   gCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCa                                                                      <  2:6283843/93‑1 (MQ=255)

                   gCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCa                                                                      >  1:103230/1‑93 (MQ=255)

                   gCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCa                                                                      >  2:1869718/1‑93 (MQ=255)

                    cAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAg                                                                     >  1:467478/1‑93 (MQ=255)

                     aGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAgc                                                                    <  2:425801/93‑1 (MQ=255)

                     aGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAgc                                                                    >  1:5775538/1‑93 (MQ=255)

                     aGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAgc                                                                    >  2:6021176/1‑93 (MQ=255)

                     aGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAgc                                                                    <  1:3993328/93‑1 (MQ=255)

                           acaGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTgg                                                              >  2:6399760/1‑93 (MQ=255)

                            caGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGc                                                             >  2:5069869/1‑93 (MQ=255)

                            caGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGc                                                             >  1:5170874/1‑93 (MQ=255)

                              gcgcCGACGTCAAACGGCGCACGCTGGGGGAGGGGGCGGAGATCGAACGTCACATTGAGGGGCTGCAATCCATGGGCTACCAGCTGGTGGCAc                                                           >  2:3603258/1‑93 (MQ=255)

                                gcCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTg                                                         >  2:5321402/1‑93 (MQ=255)

                                gcCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTg                                                         >  2:3887935/1‑93 (MQ=255)

                                 ccGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTgg                                                        >  1:340647/1‑93 (MQ=255)

                                   gACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCg                                                      >  2:1912224/1‑93 (MQ=255)

                                   gACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCg                                                      >  2:2612441/1‑93 (MQ=255)

                                     cGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGaa                                                    <  2:3265180/93‑1 (MQ=255)

                                     cGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGaa                                                    >  2:1646816/1‑93 (MQ=255)

                                     cGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGaa                                                    <  1:923567/93‑1 (MQ=255)

                                     cGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGaa                                                    <  1:5478828/93‑1 (MQ=255)

                                      gTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAAt                                                   <  1:5567440/93‑1 (MQ=255)

                                       tCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAAtg                                                  <  1:2039614/93‑1 (MQ=255)

                                          aaCGGCGCGCGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAAtgcct                                               <  1:4889817/93‑1 (MQ=255)

                                                gcACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTg                                         <  1:2480262/93‑1 (MQ=255)

                                                gcACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTg                                         >  1:3038487/1‑93 (MQ=255)

                                                 cACGCGGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGGCCAGCTGCTGGAACTGACGAATGCCTGCCCTgg                                        <  2:5600909/93‑1 (MQ=255)

                                                  aCGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTggg                                       >  2:4799887/1‑92 (MQ=255)

                                                  aCGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGc                                       >  2:6466700/1‑93 (MQ=255)

                                                    gCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGTGa                                     >  1:5221729/1‑93 (MQ=255)

                                                     cTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGAt                                    <  1:1699202/93‑1 (MQ=255)

                                                      tGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATTCCTGCCCTGTCGATg                                   >  2:4729070/1‑93 (MQ=255)

                                                       ggAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGa                                  >  2:4967773/1‑93 (MQ=255)

                                                        gagaAGGTGGCTGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 <  2:4274979/93‑1 (MQ=255)

                                                        gagaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 <  2:823757/93‑1 (MQ=255)

                                                        gagaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 >  1:4985908/1‑93 (MQ=255)

                                                        gagaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 >  1:2082675/1‑93 (MQ=255)

                                                        gagaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 >  2:2244329/1‑93 (MQ=255)

                                                        gagaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 >  1:2662403/1‑93 (MQ=255)

                                                        gagaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAc                                 >  1:3784001/1‑93 (MQ=255)

                                                         agaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACa                                <  1:2571911/93‑1 (MQ=255)

                                                         agaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACa                                <  1:3582479/93‑1 (MQ=255)

                                                          gaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAg                               <  1:4059162/93‑1 (MQ=255)

                                                          gaAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAg                               <  1:4383697/93‑1 (MQ=255)

                                                           aaGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAgc                              <  2:5577679/93‑1 (MQ=255)

                                                           aaGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAgc                              >  1:6314503/1‑93 (MQ=255)

                                                             ggTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAgcgc                            >  1:2209037/1‑93 (MQ=255)

                                                             ggTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAgcgc                            <  1:4557699/93‑1 (MQ=255)

                                                              gTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGcc                           <  1:366068/93‑1 (MQ=255)

                                                              gTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGcc                           <  1:6156669/93‑1 (MQ=255)

                                                                 gCGGAGATCGAAAGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGAc                        <  2:5674682/93‑1 (MQ=255)

                                                                  cGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACt                       <  2:408788/93‑1 (MQ=255)

                                                                    gagaTCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGc                     <  2:3686352/93‑1 (MQ=255)

                                                                     agaTCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGcc                    <  1:6062322/93‑1 (MQ=255)

                                                                      gaTCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGccc                   <  1:2879826/93‑1 (MQ=255)

                                                                      gaTCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGccc                   <  1:1751398/93‑1 (MQ=255)

                                                                        tCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGa                 <  2:1542681/93‑1 (MQ=255)

                                                                          gAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGAtt               <  1:972984/93‑1 (MQ=255)

                                                                          gAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGAtt               <  2:3018561/93‑1 (MQ=255)

                                                                           aaCGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGAttt              >  2:1286693/1‑92 (MQ=255)

                                                                           aaCGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTa              <  1:2179155/93‑1 (MQ=255)

                                                                           aaCGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTa              <  1:4516612/93‑1 (MQ=255)

                                                                            aCGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTAt             >  2:1613836/1‑93 (MQ=255)

                                                                            aCGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTAt             >  2:2347471/1‑93 (MQ=255)

                                                                              gACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCg           >  1:2841246/1‑93 (MQ=255)

                                                                               acacATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGa          >  2:1349150/1‑93 (MQ=255)

                                                                                cacaTTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGaa         <  1:4132918/93‑1 (MQ=255)

                                                                                 acaTTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGaaa        >  2:2121676/1‑93 (MQ=255)

                                                                                 acaTTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGaaa        >  2:4902259/1‑93 (MQ=255)

                                                                                   aTTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAt      <  2:324626/93‑1 (MQ=255)

                                                                                    ttGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtc     >  2:5107172/1‑93 (MQ=255)

                                                                                     tGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtct    >  2:3992706/1‑93 (MQ=255)

                                                                                      gaggggCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtctc   <  2:5848212/93‑1 (MQ=255)

                                                                                      gaggggCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtctc   >  2:6391184/1‑93 (MQ=255)

                                                                                      gaggggCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtctc   >  1:1275631/1‑93 (MQ=255)

                                                                                      gaggggCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtctc   >  1:3021358/1‑93 (MQ=255)

                                                                                       aggggCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAtctct  <  1:3272793/93‑1 (MQ=255)

TGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGAGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCT  >  NC_000913/513416‑513595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGAGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCCGG  >  NC_000913/513413‑513599

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGG                                                                                               >  SRR4302537.3255030/1‑94 (MQ=60)

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGG                                                                                               >  SRR4302537.3774388/1‑94 (MQ=60)

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGG                                                                                               <  SRR4302537.5028467/94‑1 (MQ=60)

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGG                                                                                               <  SRR4302537.6003616/94‑1 (MQ=60)

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGG                                                                                               >  SRR4302537.6450789/1‑94 (MQ=60)

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGG                                                                                               >  SRR4302537.6450790/1‑94 (MQ=60)

  GTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGC                                                                                             >  SRR4302537.6503818/1‑94 (MQ=60)

  GTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGC                                                                                             <  SRR4302537.5623491/94‑1 (MQ=60)

   TGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAACCGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCT                                                                                            <  SRR4302537.4498167/94‑1 (MQ=60)

   TGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCT                                                                                            <  SRR4302537.1974902/94‑1 (MQ=60)

    GAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTG                                                                                           <  SRR4302537.1359067/94‑1 (MQ=60)

    GAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTG                                                                                           >  SRR4302537.3530586/1‑94 (MQ=60)

     AATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGC                                                                                          >  SRR4302537.832061/1‑94 (MQ=60)

     AATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGC                                                                                          >  SRR4302537.3450026/1‑94 (MQ=60)

           TTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCA                                                                                    >  SRR4302537.436186/1‑94 (MQ=60)

           TTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCA                                                                                    <  SRR4302537.4655921/94‑1 (MQ=60)

           TTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCA                                                                                    >  SRR4302537.54243/1‑94 (MQ=60)

            TTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCAT                                                                                   >  SRR4302537.3271126/1‑94 (MQ=60)

               ACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCG                                                                                >  SRR4302537.1384896/1‑94 (MQ=60)

                CGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGC                                                                               >  SRR4302537.2534445/1‑94 (MQ=60)

                CGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGC                                                                               >  SRR4302537.119684/1‑94 (MQ=60)

                 GACCCTCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCG                                                                              <  SRR4302537.702335/94‑1 (MQ=60)

                  GCCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGA                                                                             <  SRR4302537.618363/94‑1 (MQ=60)

                  ACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGA                                                                             >  SRR4302537.5773394/1‑94 (MQ=60)

                   CCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCACTCCATGCGCGAC                                                                            >  SRR4302537.3755564/1‑94 (MQ=60)

                    CCGCAGAGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACC                                                                           <  SRR4302537.1453490/94‑1 (MQ=60)

                     CGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCA                                                                          >  SRR4302537.103974/1‑94 (MQ=60)

                     CGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCA                                                                          >  SRR4302537.2923137/1‑94 (MQ=60)

                      GCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAG                                                                         <  SRR4302537.5155883/94‑1 (MQ=60)

                      GCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAG                                                                         <  SRR4302537.2147446/94‑1 (MQ=60)

                      GCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAG                                                                         >  SRR4302537.470690/1‑94 (MQ=60)

                       CAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGC                                                                        >  SRR4302537.3902348/1‑94 (MQ=60)

                       CAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGC                                                                        >  SRR4302537.5815127/1‑94 (MQ=60)

                       CAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGC                                                                        >  SRR4302537.1152109/1‑94 (MQ=60)

                        AGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCT                                                                       <  SRR4302537.4021288/94‑1 (MQ=60)

                        AGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCT                                                                       >  SRR4302537.4664206/1‑94 (MQ=60)

                        AGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCT                                                                       <  SRR4302537.3379054/94‑1 (MQ=60)

                        AGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCT                                                                       >  SRR4302537.98676/1‑94 (MQ=60)

                          CGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGC                                                                     >  SRR4302537.125390/1‑94 (MQ=60)

                             CACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGG                                                                  <  SRR4302537.1648362/94‑1 (MQ=60)

                              ACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGC                                                                 >  SRR4302537.5206479/1‑94 (MQ=60)

                               CAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCA                                                                <  SRR4302537.494225/94‑1 (MQ=60)

                                 GCGCCGACGTCAAGCGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACT                                                              <  SRR4302537.951587/94‑1 (MQ=60)

                                   GCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGG                                                            >  SRR4302537.343007/1‑94 (MQ=60)

                                    CCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGC                                                           >  SRR4302537.5253191/1‑94 (MQ=60)

                                     CGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCG                                                          <  SRR4302537.627718/94‑1 (MQ=60)

                                     CGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCG                                                          >  SRR4302537.873732/1‑94 (MQ=60)

                                       ACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAA                                                        <  SRR4302537.6394689/94‑1 (MQ=60)

                                        CGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAAT                                                       <  SRR4302537.929942/94‑1 (MQ=60)

                                        CGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAAT                                                       <  SRR4302537.5516232/94‑1 (MQ=60)

                                        CGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAAT                                                       <  SRR4302537.2634016/94‑1 (MQ=60)

                                         GTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATG                                                      <  SRR4302537.5605493/94‑1 (MQ=60)

                                         GTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATG                                                      >  SRR4302537.2152165/1‑94 (MQ=60)

                                          TCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGC                                                     <  SRR4302537.2053845/94‑1 (MQ=60)

                                           CAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCC                                                    <  SRR4302537.581140/94‑1 (MQ=60)

                                             AACGGCGCGCGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTG                                                  <  SRR4302537.4923584/94‑1 (MQ=60)

                                             AACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTG                                                  <  SRR4302537.3651705/94‑1 (MQ=60)

                                                  CGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTG                                             >  SRR4302537.3059661/1‑94 (MQ=60)

                                                   GCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGG                                            >  SRR4302537.3670986/1‑94 (MQ=60)

                                                   GCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGG                                            <  SRR4302537.2497696/94‑1 (MQ=60)

                                                      CGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGTGA                                         >  SRR4302537.5257643/1‑94 (MQ=60)

                                                        CTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATG                                       <  SRR4302537.4504507/94‑1 (MQ=60)

                                                        CTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATG                                       >  SRR4302537.6046544/1‑94 (MQ=60)

                                                        CTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATG                                       <  SRR4302537.4168397/94‑1 (MQ=60)

                                                        CTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATG                                       <  SRR4302537.1711083/94‑1 (MQ=60)

                                                          GGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAC                                     >  SRR4302537.2097341/1‑94 (MQ=60)

                                                          GGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAC                                     >  SRR4302537.3810569/1‑94 (MQ=60)

                                                          GGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAC                                     >  SRR4302537.5020272/1‑94 (MQ=60)

                                                          GGAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGAC                                     >  SRR4302537.2681003/1‑94 (MQ=60)

                                                           GAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACA                                    <  SRR4302537.4489361/94‑1 (MQ=60)

                                                           GAGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGAAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACA                                    >  SRR4302537.6474803/1‑94 (MQ=60)

                                                            AGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAG                                   <  SRR4302537.3607733/94‑1 (MQ=60)

                                                            AGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAG                                   >  SRR4302537.2094879/1‑94 (MQ=60)

                                                            AGAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAG                                   <  SRR4302537.2589923/94‑1 (MQ=60)

                                                             GAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGC                                  <  SRR4302537.4413947/94‑1 (MQ=60)

                                                             GAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGC                                  <  SRR4302537.4087531/94‑1 (MQ=60)

                                                             GAAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGC                                  >  SRR4302537.6357722/1‑94 (MQ=60)

                                                              AAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCG                                 <  SRR4302537.1862534/94‑1 (MQ=60)

                                                              AAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCG                                 >  SRR4302537.550881/1‑94 (MQ=60)

                                                              AAGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCG                                 >  SRR4302537.1298212/1‑94 (MQ=60)

                                                               AGGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGC                                >  SRR4302537.2224614/1‑94 (MQ=60)

                                                                GGTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCC                               <  SRR4302537.4589251/94‑1 (MQ=60)

                                                                 GTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCG                              <  SRR4302537.6199036/94‑1 (MQ=60)

                                                                 GTGGCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCG                              <  SRR4302537.368610/94‑1 (MQ=60)

                                                                    GCGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACT                           >  SRR4302537.5805757/1‑94 (MQ=60)

                                                                     CGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTG                          >  SRR4302537.4555373/1‑94 (MQ=60)

                                                                     CGGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTG                          <  SRR4302537.3284609/94‑1 (MQ=60)

                                                                      GGAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGC                         >  SRR4302537.5420626/1‑94 (MQ=60)

                                                                       GAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCC                        <  SRR4302537.281778/94‑1 (MQ=60)

                                                                       GAGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCC                        <  SRR4302537.2869747/94‑1 (MQ=60)

                                                                        AGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCC                       >  SRR4302537.4916429/1‑94 (MQ=60)

                                                                        AGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCC                       <  SRR4302537.6103975/94‑1 (MQ=60)

                                                                        AGATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCC                       <  SRR4302537.2221915/94‑1 (MQ=60)

                                                                         GATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCG                      <  SRR4302537.1763605/94‑1 (MQ=60)

                                                                         GATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCG                      <  SRR4302537.2900035/94‑1 (MQ=60)

                                                                         GATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCG                      >  SRR4302537.409455/1‑94 (MQ=60)

                                                                          ATCGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGA                     >  SRR4302537.534980/1‑94 (MQ=60)

                                                                          ATCGAACGACACATTGAGGGGCGGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGA                     <  SRR4302537.6153532/94‑1 (MQ=60)

                                                                            CGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATT                   <  SRR4302537.5630696/94‑1 (MQ=60)

                                                                            CGAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATT                   <  SRR4302537.618648/94‑1 (MQ=60)

                                                                             GAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTA                  >  SRR4302537.3442471/1‑94 (MQ=60)

                                                                             GAACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTA                  <  SRR4302537.979691/94‑1 (MQ=60)

                                                                              AACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTAT                 >  SRR4302537.5571565/1‑94 (MQ=60)

                                                                              AACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTAT                 <  SRR4302537.4547856/94‑1 (MQ=60)

                                                                              AACGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTAT                 <  SRR4302537.2194512/94‑1 (MQ=60)

                                                                                CGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCG               >  SRR4302537.2861132/1‑94 (MQ=60)

                                                                                CGACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCG               >  SRR4302537.4634802/1‑94 (MQ=60)

                                                                                 GACACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGA              >  SRR4302537.2956294/1‑94 (MQ=60)

                                                                                   CACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAA            <  SRR4302537.4161761/94‑1 (MQ=60)

                                                                                   CACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAA            <  SRR4302537.2433702/94‑1 (MQ=60)

                                                                                   CACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAA            <  SRR4302537.2040780/94‑1 (MQ=60)

                                                                                   CACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAACGCCTGACCTGGCGATGACAGCTCCGACACCCCGACTATAGAAA            >  SRR4302537.5786986/1‑94 (MQ=60)

                                                                                    ACATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAA           <  SRR4302537.2841013/94‑1 (MQ=60)

                                                                                     CATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAT          >  SRR4302537.1718539/1‑94 (MQ=60)

                                                                                     CATTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAAT          >  SRR4302537.4071092/1‑94 (MQ=60)

                                                                                       TTGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATAT        >  SRR4302537.2908050/1‑94 (MQ=60)

                                                                                        TGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTC       >  SRR4302537.1284503/1‑94 (MQ=60)

                                                                                        TGAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTC       >  SRR4302537.3042420/1‑94 (MQ=60)

                                                                                         GAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCT      <  SRR4302537.1660591/94‑1 (MQ=60)

                                                                                         GAGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCT      <  SRR4302537.4682496/94‑1 (MQ=60)

                                                                                          AGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTC     <  SRR4302537.3295890/94‑1 (MQ=60)

                                                                                          AGGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTC     <  SRR4302537.3049578/94‑1 (MQ=60)

                                                                                           GGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCC    <  SRR4302537.5438097/94‑1 (MQ=60)

                                                                                           GGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCC    <  SRR4302537.831393/94‑1 (MQ=60)

                                                                                           GGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCC    <  SRR4302537.1262058/94‑1 (MQ=60)

                                                                                           GGGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCC    >  SRR4302537.3549240/1‑94 (MQ=60)

                                                                                            GGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCCG   >  SRR4302537.5065082/1‑94 (MQ=60)

                                                                                            GGGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACAGCCCGATTATCGAAAATCTCTCCG   >  SRR4302537.6518836/1‑94 (MQ=60)

                                                                                             GGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCCGG  >  SRR4302537.2148143/1‑94 (MQ=60)

                                                                                             GGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCCGG  >  SRR4302537.1200483/1‑94 (MQ=60)

                                                                                             GGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCAATTATCGAAAATCTCTCCGG  <  SRR4302537.1762442/94‑1 (MQ=60)

TGGTGAATCTGTTTAACGACCCGCAGCGGCACAGCGCCGACGTCAAACGGCGCACGCTGGAGAAGGTGGCGGAGATCGAACGACACATTGAGGAGCTGCAATCCATGCGCGACCAGCTGCTGGCACTGGCGAATGCCTGCCCTGGCGATGACAGCGCCGACTGCCCGATTATCGAAAATCTCTCCGG  >  NC_000913/513413‑513599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`