Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	535,281	A→G	E116E (GAA→GAG)	gip →	glyoxylate‑induced protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	535,281	0	A	G	100.0%	834.4 / NA	234	E116E (GAA→GAG)	gip	glyoxylate‑induced protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/119); total (115/119)

Only 100 of 238 total aligned reads displayed.

CGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAACAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTA  >  NC_000913/535191‑535369

  tAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGa                                                                                      >  1:5363578/1‑93 (MQ=255)

  tAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGa                                                                                      >  2:6155557/1‑93 (MQ=255)

   agcagcagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGAt                                                                                     <  2:2044232/93‑1 (MQ=255)

    gcagcagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGAtt                                                                                    >  1:840955/1‑93 (MQ=255)

    gcagcagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGAtt                                                                                    <  2:3702278/93‑1 (MQ=255)

      atcagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCa                                                                                  <  2:2306012/91‑1 (MQ=255)

       gcagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCAc                                                                                 >  2:1000796/1‑93 (MQ=255)

       gcagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCAc                                                                                 >  1:1875521/1‑93 (MQ=255)

        cagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACg                                                                                <  1:5577669/93‑1 (MQ=255)

        cagcGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACg                                                                                <  1:260635/93‑1 (MQ=255)

            gATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAAc                                                                            >  2:1796564/1‑93 (MQ=255)

             aTTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACg                                                                           >  1:3695496/1‑93 (MQ=255)

              ttCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGc                                                                          <  2:6400333/93‑1 (MQ=255)

                cGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCtt                                                                        >  1:6419339/1‑93 (MQ=255)

                 gTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTg                                                                       >  1:511577/1‑93 (MQ=255)

                 gTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTg                                                                       <  1:5037079/93‑1 (MQ=255)

                 gTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTg                                                                       >  2:5019279/1‑93 (MQ=255)

                 gTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGAAGTGAGCAGATTCACGAAACGCTTg                                                                       >  1:2035762/1‑93 (MQ=255)

                  ttATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGt                                                                      >  1:5842865/1‑93 (MQ=255)

                  ttATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTATGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGt                                                                      >  1:4208582/1‑93 (MQ=255)

                   tATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTa                                                                     >  2:3514834/1‑93 (MQ=255)

                    aTGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAg                                                                    <  2:622482/93‑1 (MQ=255)

                        ccGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGaaaa                                                                <  2:4719449/93‑1 (MQ=255)

                        ccGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGaaaa                                                                >  1:3348165/1‑93 (MQ=255)

                          gTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAAcc                                                              >  1:5622086/1‑93 (MQ=255)

                           tGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCt                                                             >  1:6020601/1‑93 (MQ=255)

                            gcgcTGGGTAATAAAAGAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTg                                                            <  2:4153376/93‑1 (MQ=255)

                            gcgcTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTg                                                            <  1:5699505/93‑1 (MQ=255)

                            gcgcTGGGTAATAAAAAAATTAACTGTCTGGGCGGTAAAACTCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTg                                                            <  1:4902395/93‑1 (MQ=255)

                             cgcTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGc                                                           <  2:1150558/93‑1 (MQ=255)

                              gcTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCg                                                          <  2:228898/93‑1 (MQ=255)

                              gcTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCg                                                          >  2:5911035/1‑93 (MQ=255)

                               cTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGt                                                         >  2:5242646/1‑93 (MQ=255)

                               cTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGt                                                         <  2:5759004/93‑1 (MQ=255)

                                tGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGtt                                                        >  1:1942129/1‑93 (MQ=255)

                                 gggTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTa                                                       <  1:1203706/93‑1 (MQ=255)

                                 gggTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTa                                                       <  2:450174/93‑1 (MQ=255)

                                 gggTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTa                                                       >  1:3906007/1‑93 (MQ=255)

                                 gggTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTa                                                       <  2:769294/93‑1 (MQ=255)

                                 gggTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTa                                                       >  2:2604766/1‑93 (MQ=255)

                                   gTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATg                                                     >  2:6332694/1‑93 (MQ=255)

                                   gTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATg                                                     <  1:5229545/93‑1 (MQ=255)

                                    taataaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGc                                                    >  2:1212587/1‑93 (MQ=255)

                                    taataaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGc                                                    >  1:812241/1‑93 (MQ=255)

                                    taataaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTGCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGc                                                    <  2:6382072/93‑1 (MQ=255)

                                      ataaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCcg                                                  >  1:4429907/1‑93 (MQ=255)

                                      ataaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCcg                                                  >  2:4889486/1‑93 (MQ=255)

                                      ataaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCcg                                                  >  1:3630520/1‑93 (MQ=255)

                                       taaAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCcgc                                                 >  2:5647971/1‑93 (MQ=255)

                                        aaaaaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCcgcg                                                >  1:3125921/1‑93 (MQ=255)

                                         aaaaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGa                                               <  2:5935922/93‑1 (MQ=255)

                                         aaaaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGa                                               <  2:5581989/93‑1 (MQ=255)

                                          aaaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGaa                                              <  1:6287259/93‑1 (MQ=255)

                                          aaaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGaa                                              <  1:4663130/93‑1 (MQ=255)

                                          aaaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGaa                                              <  1:4728246/93‑1 (MQ=255)

                                           aaaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAat                                             >  2:4425971/1‑93 (MQ=255)

                                            aaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAata                                            <  2:3366673/93‑1 (MQ=255)

                                            aaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAata                                            <  1:2677911/93‑1 (MQ=255)

                                            aaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAata                                            <  1:4360793/93‑1 (MQ=255)

                                            aaaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGGTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAata                                            >  2:2874907/1‑93 (MQ=255)

                                             aaTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAGCCTGCGTTATGCCGCGAatat                                           <  1:663308/93‑1 (MQ=255)

                                              aTTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATg                                          <  1:2739767/93‑1 (MQ=255)

                                               ttAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGCTTCACCAAACCCCTGTAGAAACCCTGCGTTATGCCGCGAATATGc                                         >  1:4277166/1‑93 (MQ=255)

                                               ttAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGc                                         <  1:4649864/93‑1 (MQ=255)

                                                tAACTGTCTGGTGGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCt                                        <  1:3372/93‑1 (MQ=255)

                                                tAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCt                                        <  2:4233853/93‑1 (MQ=255)

                                                tAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCt                                        >  2:2967450/1‑93 (MQ=255)

                                                   cTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCtgat                                     >  1:1510685/1‑93 (MQ=255)

                                                   cTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCtgat                                     <  1:4236413/93‑1 (MQ=255)

                                                   cTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCtgat                                     >  2:323596/1‑93 (MQ=255)

                                                   cTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCtgat                                     >  1:4922947/1‑93 (MQ=255)

                                                    tGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCtgatg                                    >  2:2702791/1‑93 (MQ=255)

                                                    tGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCtgatg                                    >  2:5361667/1‑93 (MQ=255)

                                                       cTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGaaa                                 >  2:5076380/1‑93 (MQ=255)

                                                       cTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGaaa                                 <  2:4063703/93‑1 (MQ=255)

                                                       cTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGaaa                                 >  1:6213454/1‑93 (MQ=255)

                                                        tGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAaag                                >  2:2903063/1‑93 (MQ=255)

                                                            cGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAagaaga                            >  1:887401/1‑93 (MQ=255)

                                                             ggTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGat                           <  1:1705978/93‑1 (MQ=255)

                                                               tAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGatat                         <  1:1533262/93‑1 (MQ=255)

                                                               tAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGatat                         >  1:3844217/1‑93 (MQ=255)

                                                                aaaaCGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATAtt                        >  1:378350/1‑93 (MQ=255)

                                                                aaaaCGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATAtt                        >  2:2363353/1‑93 (MQ=255)

                                                                  aaCGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATAtttt                      >  1:103579/1‑93 (MQ=255)

                                                                    tgCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTttat                    >  2:2810235/2‑93 (MQ=255)

                                                                     gCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTttatt                   <  1:2177788/93‑1 (MQ=255)

                                                                       cGGCTGGTGTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTAc                 <  2:365093/93‑1 (MQ=255)

                                                                        ggCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACt                >  1:4799812/1‑93 (MQ=255)

                                                                         gCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTg               >  1:2400661/1‑93 (MQ=255)

                                                                         gCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTg               >  1:3415886/1‑93 (MQ=255)

                                                                          cTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGa              <  1:1071977/93‑1 (MQ=255)

                                                                           tGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGAt             >  2:3588586/1‑93 (MQ=255)

                                                                           tGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGAt             <  2:3104229/93‑1 (MQ=255)

                                                                           tGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGAt             >  2:1492944/1‑93 (MQ=255)

                                                                            ggTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGAtt            <  1:5284779/93‑1 (MQ=255)

                                                                              tttCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGa          <  2:843922/93‑1 (MQ=255)

                                                                                 cagcagTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAAcc       >  2:1406517/1‑93 (MQ=255)

                                                                                  agcagTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCt      <  2:2100002/93‑1 (MQ=255)

                                                                                   gcagTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTa     >  1:5555579/1‑93 (MQ=255)

                                                                                   gcagTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTa     >  1:3061206/1‑93 (MQ=255)

CGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAACAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTA  >  NC_000913/535191‑535369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAACAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTAACCA  >  NC_000913/535188‑535373

TGGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAG                                                                                              <  SRR4302537.3508611/94‑1 (MQ=60)

TGGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAG                                                                                              <  SRR4302537.2276472/94‑1 (MQ=60)

TGGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAG                                                                                              >  SRR4302537.5449058/1‑94 (MQ=60)

TGGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAG                                                                                              <  SRR4302537.1400618/94‑1 (MQ=60)

 GGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGC                                                                                             >  SRR4302537.3380723/1‑94 (MQ=60)

   CGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAG                                                                                           >  SRR4302537.920086/1‑94 (MQ=60)

   CGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAG                                                                                           <  SRR4302537.3283478/94‑1 (MQ=60)

   CGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAG                                                                                           <  SRR4302537.1809055/94‑1 (MQ=60)

   CGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAG                                                                                           >  SRR4302537.4999641/1‑94 (MQ=60)

    GTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGA                                                                                          >  SRR4302537.5400290/1‑94 (MQ=60)

      AGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATT                                                                                        >  SRR4302537.846715/1‑94 (MQ=60)

       GCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTC                                                                                       <  SRR4302537.4349915/94‑1 (MQ=60)

       GCAGCAGCGATTCATTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTC                                                                                       >  SRR4302537.3509786/1‑94 (MQ=60)

         AGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCAC                                                                                     >  SRR4302537.1764765/1‑94 (MQ=60)

         AGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCAC                                                                                     >  SRR4302537.1888567/1‑94 (MQ=60)

          GCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACG                                                                                    <  SRR4302537.4950864/94‑1 (MQ=60)

          GCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACG                                                                                    >  SRR4302537.424048/1‑94 (MQ=60)

           CAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGC                                                                                   <  SRR4302537.5615790/94‑1 (MQ=60)

           CAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGC                                                                                   <  SRR4302537.262472/94‑1 (MQ=60)

            AGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCA                                                                                  >  SRR4302537.2178795/1‑94 (MQ=60)

               GATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACG                                                                               >  SRR4302537.3721501/1‑94 (MQ=60)

                ATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGC                                                                              <  SRR4302537.649384/94‑1 (MQ=60)

                ATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGCGTCAGCAGTGAGCAGAGTCACGCAACGC                                                                              >  SRR4302537.894009/1‑94 (MQ=60)

                  TCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTT                                                                            >  SRR4302537.6462981/1‑94 (MQ=60)

                   CGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTG                                                                           >  SRR4302537.515084/1‑94 (MQ=60)

                   CGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGAAGTGAGCAGATTCACGAAACGCTTG                                                                           >  SRR4302537.2049952/1‑94 (MQ=60)

                    GTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGT                                                                          <  SRR4302537.5071755/94‑1 (MQ=60)

                    GTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGT                                                                          >  SRR4302537.5882927/1‑94 (MQ=60)

                    GTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGT                                                                          <  SRR4302537.274576/94‑1 (MQ=60)

                    GTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGT                                                                          >  SRR4302537.468521/1‑94 (MQ=60)

                    GTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGCTTCAGCAGTGAGCAGATTCACGCAACGCTTGT                                                                          >  SRR4302537.1991888/1‑94 (MQ=60)

                    GTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTATGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGT                                                                          >  SRR4302537.4237944/1‑94 (MQ=60)

                     TTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTA                                                                         >  SRR4302537.2633946/1‑94 (MQ=60)

                      TATGCCCGTGCGCTGGGTAATAAAAAAATTACCTGTCTGGTCGTTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAG                                                                        <  SRR4302537.4458056/94‑1 (MQ=60)

                      TATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAG                                                                        <  SRR4302537.2550265/94‑1 (MQ=60)

                       ATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGA                                                                       >  SRR4302537.840819/1‑94 (MQ=60)

                        TGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAA                                                                      >  SRR4302537.1368796/1‑94 (MQ=60)

                        TGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAA                                                                      <  SRR4302537.4806892/94‑1 (MQ=60)

                         GCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAA                                                                     >  SRR4302537.4878191/1‑94 (MQ=60)

                         GCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAA                                                                     >  SRR4302537.5305545/1‑94 (MQ=60)

                          CCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAA                                                                    >  SRR4302537.3371866/1‑94 (MQ=60)

                            CGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACC                                                                  >  SRR4302537.5660523/1‑94 (MQ=60)

                             GTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCT                                                                 <  SRR4302537.5410584/94‑1 (MQ=60)

                             GTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCT                                                                 >  SRR4302537.6061963/1‑94 (MQ=60)

                             GTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCT                                                                 <  SRR4302537.3792034/94‑1 (MQ=60)

                              TGCGCTGTGTAATAAAAAAATTAACTGGCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTG                                                                <  SRR4302537.2221727/94‑1 (MQ=60)

                               GCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGC                                                               <  SRR4302537.5738507/94‑1 (MQ=60)

                               GCGCTGGGTAATAAAAAAATTAACTGTCTGGGCGGTAAAACTCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGC                                                               <  SRR4302537.4936236/94‑1 (MQ=60)

                                GGCTGGGTAATAAAAAAATCAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCG                                                              <  SRR4302537.720732/94‑1 (MQ=60)

                                 GCTGTGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGT                                                             <  SRR4302537.858466/94‑1 (MQ=60)

                                  CTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTT                                                            >  SRR4302537.1955631/1‑94 (MQ=60)

                                  CTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTT                                                            >  SRR4302537.1523140/1‑94 (MQ=60)

                                   TGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTA                                                           >  SRR4302537.3933314/1‑94 (MQ=60)

                                    GGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTAT                                                          <  SRR4302537.1212080/94‑1 (MQ=60)

                                     GGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATG                                                         <  SRR4302537.641062/94‑1 (MQ=60)

                                      GTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGC                                                        <  SRR4302537.5265508/94‑1 (MQ=60)

                                      GTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGC                                                        >  SRR4302537.817807/1‑94 (MQ=60)

                                       TAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCC                                                       <  SRR4302537.803073/94‑1 (MQ=60)

                                        AATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCG                                                      >  SRR4302537.3656103/1‑94 (MQ=60)

                                        AATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCG                                                      >  SRR4302537.4460500/1‑94 (MQ=60)

                                         ATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGC                                                     <  SRR4302537.5737133/94‑1 (MQ=60)

                                          TAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCG                                                    >  SRR4302537.5729017/1‑94 (MQ=60)

                                          TAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCG                                                    >  SRR4302537.3147819/1‑94 (MQ=60)

                                           AAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGA                                                   >  SRR4302537.5574260/1‑94 (MQ=60)

                                            AAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAA                                                  <  SRR4302537.3846684/94‑1 (MQ=60)

                                            AAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAA                                                  >  SRR4302537.5066702/1‑94 (MQ=60)

                                            AAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAA                                                  <  SRR4302537.2762680/94‑1 (MQ=60)

                                             AAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAAT                                                 <  SRR4302537.4760927/94‑1 (MQ=60)

                                             AAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAAT                                                 <  SRR4302537.4695356/94‑1 (MQ=60)

                                             AAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAAT                                                 <  SRR4302537.6330357/94‑1 (MQ=60)

                                             AAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAAT                                                 <  SRR4302537.367651/94‑1 (MQ=60)

                                               AAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATAT                                               <  SRR4302537.4390967/94‑1 (MQ=60)

                                               AAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATAT                                               <  SRR4302537.6272777/94‑1 (MQ=60)

                                               AAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATAT                                               <  SRR4302537.5616287/94‑1 (MQ=60)

                                               AAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATAT                                               <  SRR4302537.2696612/94‑1 (MQ=60)

                                                AATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAGCCTGCGTTATGCCGCGAATATG                                              <  SRR4302537.667824/94‑1 (MQ=60)

                                                AATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATG                                              <  SRR4302537.5076332/94‑1 (MQ=60)

                                                AATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATG                                              <  SRR4302537.3841215/94‑1 (MQ=60)

                                                 ATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGCTTCACCAAACCCCTGTAGAAACCCTGCGTTATGCCGCGAATATGC                                             >  SRR4302537.4306891/1‑94 (MQ=60)

                                                 ATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGC                                             <  SRR4302537.2758886/94‑1 (MQ=60)

                                                  TTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCT                                            <  SRR4302537.1093914/94‑1 (MQ=60)

                                                  TTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCT                                            <  SRR4302537.4682012/94‑1 (MQ=60)

                                                  TTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCT                                            <  SRR4302537.4604118/94‑1 (MQ=60)

                                                  TTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCT                                            <  SRR4302537.637809/94‑1 (MQ=60)

                                                   TAACTGTCTGGTGGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTG                                           <  SRR4302537.3400/94‑1 (MQ=60)

                                                   TAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTG                                           <  SRR4302537.1383351/94‑1 (MQ=60)

                                                    AACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGA                                          >  SRR4302537.6100938/1‑94 (MQ=60)

                                                     ACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGAT                                         <  SRR4302537.3106707/94‑1 (MQ=60)

                                                     ACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGAT                                         >  SRR4302537.4956898/1‑94 (MQ=60)

                                                     ACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGAT                                         >  SRR4302537.1521245/1‑94 (MQ=60)

                                                      CTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATG                                        <  SRR4302537.1631230/94‑1 (MQ=60)

                                                      CTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATG                                        >  SRR4302537.4524152/1‑94 (MQ=60)

                                                      CTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATG                                        <  SRR4302537.4265883/94‑1 (MQ=60)

                                                      CTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATG                                        >  SRR4302537.5168390/1‑94 (MQ=60)

                                                       TGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGA                                       <  SRR4302537.3195367/94‑1 (MQ=60)

                                                       TGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGA                                       <  SRR4302537.4213081/94‑1 (MQ=60)

                                                        GTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAA                                      <  SRR4302537.1052757/94‑1 (MQ=60)

                                                         TCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAA                                     >  SRR4302537.6256249/1‑94 (MQ=60)

                                                          CTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAG                                    >  SRR4302537.2535021/1‑94 (MQ=60)

                                                              TCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGA                                >  SRR4302537.893507/1‑94 (MQ=60)

                                                              TCGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGA                                >  SRR4302537.2056961/1‑94 (MQ=60)

                                                               CGGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGAT                               <  SRR4302537.3013704/94‑1 (MQ=60)

                                                                GGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATA                              <  SRR4302537.1717904/94‑1 (MQ=60)

                                                                GGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATA                              >  SRR4302537.4308420/1‑94 (MQ=60)

                                                                GGTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATA                              >  SRR4302537.3419531/1‑94 (MQ=60)

                                                                 GTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATAT                             >  SRR4302537.4799453/1‑94 (MQ=60)

                                                                 GTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATAT                             >  SRR4302537.1955857/1‑94 (MQ=60)

                                                                 GTAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATAT                             >  SRR4302537.3871137/1‑94 (MQ=60)

                                                                  TAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATT                            <  SRR4302537.1543975/94‑1 (MQ=60)

                                                                  TAAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATT                            >  SRR4302537.380972/1‑94 (MQ=60)

                                                                   AAAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTT                           <  SRR4302537.3456139/94‑1 (MQ=60)

                                                                    AAACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTT                          >  SRR4302537.104325/1‑94 (MQ=60)

                                                                      ACGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTAT                        <  SRR4302537.587232/94‑1 (MQ=60)

                                                                       CGCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATT                       >  SRR4302537.1909235/1‑94 (MQ=60)

                                                                        GCCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTA                      <  SRR4302537.2193137/94‑1 (MQ=60)

                                                                         CCGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTAC                     >  SRR4302537.5930008/1‑94 (MQ=60)

                                                                          CGGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACT                    >  SRR4302537.4832927/1‑94 (MQ=60)

                                                                           GGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTG                   >  SRR4302537.3440071/1‑94 (MQ=60)

                                                                           GGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTG                   <  SRR4302537.519411/94‑1 (MQ=60)

                                                                           GGCTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTG                   >  SRR4302537.2417570/1‑94 (MQ=60)

                                                                             CTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGAT                 <  SRR4302537.1079367/94‑1 (MQ=60)

                                                                             CTGGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGAT                 >  SRR4302537.4733847/1‑94 (MQ=60)

                                                                               GGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTG               <  SRR4302537.5321121/94‑1 (MQ=60)

                                                                               GGTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTG               <  SRR4302537.3395542/94‑1 (MQ=60)

                                                                                GTTTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGA              <  SRR4302537.3919011/94‑1 (MQ=60)

                                                                                  TTCAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAAC            <  SRR4302537.5390744/94‑1 (MQ=60)

                                                                                    CAGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCT          <  SRR4302537.4123093/94‑1 (MQ=60)

                                                                                     AGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTA         >  SRR4302537.3082537/1‑94 (MQ=60)

                                                                                     AGCAGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTA         >  SRR4302537.5593510/1‑94 (MQ=60)

                                                                                        AGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTA      <  SRR4302537.5598828/94‑1 (MQ=60)

                                                                                        AGTGAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTA      >  SRR4302537.6049832/1‑94 (MQ=60)

                                                                                           GAGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTAACC   <  SRR4302537.4289897/94‑1 (MQ=60)

                                                                                            AGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGCTGAAAGAAGATATTTTATTACTGATTGAACCTATTAACCA  >  SRR4302537.3245767/1‑94 (MQ=60)

                                                                                            AGCAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTAACCA  >  SRR4302537.3813097/1‑94 (MQ=60)

TGGCGTAGCAGCAGCGATTCGTTATGCCCGTGCGCTGGGTAATAAAAAAATTAACTGTCTGGTCGGTAAAACGCCGGCTGGTTTCAGCAGTGAACAGATTCACGCAACGCTTGTAGAAAACCTGCGTTATGCCGCGAATATGCTGATGAAAGAAGATATTTTATTACTGATTGAACCTATTAACCA  >  NC_000913/535188‑535373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`