Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
547,835 |
+G |
coding (255/261 nt) |
b4507 → |
hypothetical protein |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 547,831 | 1 | . | G | 99.6%
| 815.7
/ ‑3.8
| 235 | coding (251/261 nt) | b4507 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (138/96); total (139/96) |
Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.85e-01 |
Only 100 of 266 total aligned reads displayed.
GATGACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTG > NC_000913/547739‑547918
|
gaTGACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCa < 2:5833544/93‑1 (MQ=255)
gaTGACCGGACCCATGAAAGGGGCGTGCGTGCGCGCATGTCTGTTCGGAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCa > 2:3206448/1‑93 (MQ=255)
aTGACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑g < 1:1104223/93‑1 (MQ=255)
tGACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑gg > 2:2438532/1‑93 (MQ=255)
gACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑ggg < 1:412511/93‑1 (MQ=255)
gACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑ggg < 1:2726696/93‑1 (MQ=255)
cGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑ggggga > 1:6421258/1‑91 (MQ=255)
ggACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑gggggaa < 1:3312130/93‑4 (MQ=255)
ggACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑gggggaa < 1:2837283/93‑4 (MQ=255)
gACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑gggggaag > 1:5795754/1‑89 (MQ=255)
cccATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTg < 1:1324794/93‑1 (MQ=255)
aTGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAAc > 2:3668049/1‑93 (MQ=255)
aTGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAAc < 2:1364333/93‑1 (MQ=255)
aTGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAAc > 2:3880927/1‑93 (MQ=255)
tGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCACTACTGGAGCAGGGGG‑AAGTGAACt > 1:1768391/1‑93 (MQ=255)
tGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACt > 2:2151961/1‑93 (MQ=255)
gAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACtt > 2:5494386/1‑93 (MQ=255)
aaGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑CAGTGAACTTCa > 1:5761590/1‑93 (MQ=255)
aaGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCa > 1:269206/1‑93 (MQ=255)
aGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCAt > 1:6078021/1‑93 (MQ=255)
aGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCAt > 1:5147540/1‑93 (MQ=255)
gggCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTc > 1:2197733/1‑93 (MQ=255)
ggCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTcc > 2:423370/1‑93 (MQ=255)
ggCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTcc < 1:4846081/93‑1 (MQ=255)
cgtgcgtgGGCGCATGTCTGTGCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCtt < 1:3568709/93‑1 (MQ=255)
gcgtgGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTc > 1:4410508/1‑93 (MQ=255)
gtgGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCAc > 2:5715377/1‑93 (MQ=255)
gtgGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCAc < 1:975699/93‑1 (MQ=255)
tgGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑ACGTGAACTTCATTCCTTGTCAcc > 2:1090785/1‑93 (MQ=255)
tgGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCAcc > 2:5268184/1‑93 (MQ=255)
gggCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCa < 2:2967228/93‑1 (MQ=255)
gggCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCa > 1:2556023/1‑93 (MQ=255)
ggCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCAt > 2:3380491/1‑93 (MQ=255)
cgcATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCAtgt < 1:3982775/93‑1 (MQ=255)
cgcATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCAtgt < 1:4247586/93‑1 (MQ=255)
cATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGa > 1:3915060/1‑93 (MQ=255)
cATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGa > 2:3056627/1‑93 (MQ=255)
aTGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGaa < 1:6136898/93‑1 (MQ=255)
aTGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGaa < 2:619739/93‑1 (MQ=255)
aTGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGaa > 1:1365197/1‑93 (MQ=255)
aTGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGaa > 2:5539367/1‑93 (MQ=255)
aTGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGaa > 1:3774250/1‑93 (MQ=255)
tGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAAt < 1:1218341/93‑1 (MQ=255)
tGTCTGTTCGAAGGTTCGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAAt > 2:823206/1‑93 (MQ=255)
cTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGcc > 1:691782/1‑93 (MQ=255)
cTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGcc > 1:2655159/1‑93 (MQ=255)
tGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCg > 2:951988/1‑93 (MQ=255)
gTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGt > 1:5482535/1‑93 (MQ=255)
gTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGt < 1:6462808/93‑1 (MQ=255)
gTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGt < 2:2578450/93‑1 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTc < 2:5230079/93‑1 (MQ=255)
ttCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTc > 2:6457376/1‑93 (MQ=255)
tCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCg < 1:5209531/93‑1 (MQ=255)
tCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCg < 2:4735348/93‑1 (MQ=255)
cGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCgg < 2:4032542/93‑1 (MQ=255)
aaGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGc > 1:5009496/1‑93 (MQ=255)
aaGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGc < 1:4922623/93‑1 (MQ=255)
aGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGcc > 2:1530791/1‑93 (MQ=255)
aGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGcc < 1:3695783/93‑1 (MQ=255)
gTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCaa < 2:304864/93‑1 (MQ=255)
gTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCaa > 2:5925172/1‑93 (MQ=255)
tGGGCGAAAGATGAAGCGCAGGCGCTGGCAATAGTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATg < 2:4187930/93‑1 (MQ=255)
gggCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATgg < 1:3075978/93‑1 (MQ=255)
ggCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATggg > 1:3417427/1‑93 (MQ=255)
gCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGc < 2:4649419/93‑1 (MQ=255)
cGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCg < 2:6342644/93‑1 (MQ=255)
gAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCgg > 1:1485064/1‑93 (MQ=255)
aaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTa < 1:5689293/93‑1 (MQ=255)
aaGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGACGTCGGGCCAATGGGCGGTa > 1:3176718/1‑93 (MQ=255)
aGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAt > 1:4063103/1‑93 (MQ=255)
aGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAt < 2:346166/93‑1 (MQ=255)
gATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAtt > 1:1934269/1‑93 (MQ=255)
gATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAtt > 2:2392575/1‑93 (MQ=255)
aTGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATTCCGTCGGGCCAATGGGCGGTATTa < 2:4912182/93‑1 (MQ=255)
aTGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTa < 1:143801/93‑1 (MQ=255)
tGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTAc > 2:22850/1‑93 (MQ=255)
gAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACt < 1:2419695/93‑1 (MQ=255)
aaGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACtt > 2:4555939/1‑93 (MQ=255)
gcgcAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCt > 1:4821289/1‑93 (MQ=255)
gcAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGc < 2:603798/93‑1 (MQ=255)
cAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGcc < 1:4568788/93‑1 (MQ=255)
atgcgcTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCa > 2:1917905/3‑93 (MQ=255)
aGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCa > 2:588784/1‑93 (MQ=255)
ggCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAg > 1:1684769/1‑93 (MQ=255)
cgcTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTa < 2:1753532/93‑1 (MQ=255)
gcTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTAt > 2:362532/1‑93 (MQ=255)
gcTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTAt > 2:3384022/1‑93 (MQ=255)
ccTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTAt < 2:4453682/92‑1 (MQ=255)
cTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATg > 2:5035908/1‑93 (MQ=255)
cTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATg < 1:3604415/93‑1 (MQ=255)
cTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATg > 2:1624362/1‑93 (MQ=255)
tGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCCGCCAGTATGc > 1:5929435/1‑93 (MQ=255)
ggCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGcc > 2:2821696/1‑93 (MQ=255)
aTACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATg > 2:5139683/1‑93 (MQ=255)
aTACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATg > 1:3674260/1‑93 (MQ=255)
tACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGc > 1:3857076/1‑93 (MQ=255)
tACTGGAGCA‑GGGGCAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGc > 1:4292775/1‑93 (MQ=255)
aCTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCt > 2:2795702/1‑93 (MQ=255)
cTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCtg > 1:1008586/1‑93 (MQ=255)
tGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCtgg > 1:4786373/1‑93 (MQ=255)
|
GATGACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTG > NC_000913/547739‑547918
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAACG > NC_000913/547742‑547928
|
GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG > SRR4302537.4822574/1‑94 (MQ=60)
GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG < SRR4302537.2745738/94‑1 (MQ=60)
GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG < SRR4302537.3711310/94‑1 (MQ=60)
GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG > SRR4302537.144301/1‑94 (MQ=60)
GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG < SRR4302537.415366/94‑1 (MQ=60)
CCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG‑GA < SRR4302537.5853984/94‑1 (MQ=60)
CCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG‑GA > SRR4302537.6464907/1‑94 (MQ=60)
GGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAG < SRR4302537.2857134/94‑1 (MQ=60)
GGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAG < SRR4302537.3157536/94‑1 (MQ=60)
GGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAG < SRR4302537.3335562/94‑1 (MQ=60)
GGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAG > SRR4302537.5835491/1‑94 (MQ=60)
ACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTG < SRR4302537.2285129/94‑1 (MQ=60)
ACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTG < SRR4302537.488485/94‑1 (MQ=60)
CCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGA < SRR4302537.1334029/94‑1 (MQ=60)
CATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAAC < SRR4302537.4039383/94‑1 (MQ=60)
CATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAAC > SRR4302537.5849968/1‑94 (MQ=60)
CATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAAC > SRR4302537.623957/1‑94 (MQ=60)
ATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCACTACTGGAGCAGGGGG‑AAGTGAACT > SRR4302537.1780703/1‑94 (MQ=60)
ATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACT < SRR4302537.1723142/94‑1 (MQ=60)
GAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTC > SRR4302537.1152188/1‑94 (MQ=60)
AAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑CAGTGAACTTCA > SRR4302537.5801060/1‑94 (MQ=60)
AAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCA < SRR4302537.3390985/94‑1 (MQ=60)
AAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCA > SRR4302537.271103/1‑94 (MQ=60)
AAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCA > SRR4302537.2734372/1‑94 (MQ=60)
AAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCAT > SRR4302537.5183009/1‑94 (MQ=60)
AAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCAT > SRR4302537.6119788/1‑94 (MQ=60)
AGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATT > SRR4302537.927264/1‑94 (MQ=60)
AGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATT < SRR4302537.3088281/94‑1 (MQ=60)
AGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATT > SRR4302537.458797/1‑94 (MQ=60)
AGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATT > SRR4302537.5986694/1‑94 (MQ=60)
GGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTC > SRR4302537.2213218/1‑94 (MQ=60)
GGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTC < SRR4302537.3810397/94‑1 (MQ=60)
GGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTC < SRR4302537.3445904/94‑1 (MQ=60)
GGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCT < SRR4302537.4879522/94‑1 (MQ=60)
GCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTT < SRR4302537.6149974/94‑1 (MQ=60)
CGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTG < SRR4302537.5001600/94‑1 (MQ=60)
CGTGCGTGGGCGCATGTCTGTGCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTG < SRR4302537.3593874/94‑1 (MQ=60)
GTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGT > SRR4302537.2707012/1‑94 (MQ=60)
TGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTC > SRR4302537.4440942/1‑94 (MQ=60)
GCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCA < SRR4302537.3623603/94‑1 (MQ=60)
GCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCA > SRR4302537.1630341/1‑94 (MQ=60)
CGTGGGCGCATGTCTATTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCAC > SRR4302537.3220797/1‑94 (MQ=60)
GTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACC > SRR4302537.4860182/1‑94 (MQ=60)
GTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACC < SRR4302537.982429/94‑1 (MQ=60)
TGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCA > SRR4302537.2573941/1‑94 (MQ=60)
GGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCAT < SRR4302537.2215740/94‑1 (MQ=60)
CGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTG < SRR4302537.4010657/94‑1 (MQ=60)
CGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTG < SRR4302537.4277106/94‑1 (MQ=60)
GCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGA > SRR4302537.6472764/1‑94 (MQ=60)
GCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGA > SRR4302537.3942426/1‑94 (MQ=60)
GCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGA < SRR4302537.3787240/94‑1 (MQ=60)
CATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAA > SRR4302537.1680516/1‑94 (MQ=60)
CATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAA > SRR4302537.1374711/1‑94 (MQ=60)
CATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAA > SRR4302537.3800745/1‑94 (MQ=60)
ATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAAT < SRR4302537.409635/94‑1 (MQ=60)
ATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAAT < SRR4302537.6179091/94‑1 (MQ=60)
TGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATG < SRR4302537.1226815/94‑1 (MQ=60)
TGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATG > SRR4302537.3771784/1‑94 (MQ=60)
GTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGC < SRR4302537.2786371/94‑1 (MQ=60)
TCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCC > SRR4302537.696519/1‑94 (MQ=60)
TCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCC > SRR4302537.2673719/1‑94 (MQ=60)
CTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCG > SRR4302537.3241790/1‑94 (MQ=60)
TGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGT < SRR4302537.1371406/94‑1 (MQ=60)
TGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGT > SRR4302537.5519965/1‑94 (MQ=60)
TGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGT > SRR4302537.1224425/1‑94 (MQ=60)
GTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTC > SRR4302537.4312691/1‑94 (MQ=60)
GTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTC < SRR4302537.6506594/94‑1 (MQ=60)
TTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCG > SRR4302537.5975936/1‑94 (MQ=60)
TCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGG < SRR4302537.5245358/94‑1 (MQ=60)
TCGAAGGTTGGGCGAAAGATGAAGCACAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGG < SRR4302537.3633699/94‑1 (MQ=60)
CGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGG < SRR4302537.264944/94‑1 (MQ=60)
CGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGG > SRR4302537.5219572/1‑94 (MQ=60)
GAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGC > SRR4302537.5044007/1‑94 (MQ=60)
AAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCC < SRR4302537.4956572/94‑1 (MQ=60)
AGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCA > SRR4302537.1030522/1‑94 (MQ=60)
AGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCA < SRR4302537.4743054/94‑1 (MQ=60)
AGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCA < SRR4302537.3721791/94‑1 (MQ=60)
GTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAAT < SRR4302537.5090858/94‑1 (MQ=60)
TTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATG < SRR4302537.1989948/94‑1 (MQ=60)
GGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGG < SRR4302537.3097405/94‑1 (MQ=60)
GGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGG > SRR4302537.3441619/1‑94 (MQ=60)
GGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGC < SRR4302537.2648376/94‑1 (MQ=60)
GCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCG < SRR4302537.280810/94‑1 (MQ=60)
GCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCG < SRR4302537.5817587/94‑1 (MQ=60)
CGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGG > SRR4302537.1495399/1‑94 (MQ=60)
CGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGG > SRR4302537.69082/1‑94 (MQ=60)
CGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGG > SRR4302537.3618516/1‑94 (MQ=60)
GAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGT > SRR4302537.3408436/1‑94 (MQ=60)
GAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGT > SRR4302537.573761/1‑94 (MQ=60)
GAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGT > SRR4302537.3901884/1‑94 (MQ=60)
AAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTA < SRR4302537.6281401/94‑1 (MQ=60)
AAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTA > SRR4302537.3060374/1‑94 (MQ=60)
AAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGACGTCGGGCCAATGGGCGGTA > SRR4302537.3199043/1‑94 (MQ=60)
AAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAT > SRR4302537.4091494/1‑94 (MQ=60)
AAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAT > SRR4302537.1474881/1‑94 (MQ=60)
AAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAT < SRR4302537.4892979/94‑1 (MQ=60)
AAGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTAT < SRR4302537.5728209/94‑1 (MQ=60)
AGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATT > SRR4302537.4017248/1‑94 (MQ=60)
AGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATT < SRR4302537.394641/94‑1 (MQ=60)
AGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATT < SRR4302537.441530/94‑1 (MQ=60)
AGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATT > SRR4302537.3975503/1‑94 (MQ=60)
AGATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATT > SRR4302537.1947722/1‑94 (MQ=60)
GATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTA > SRR4302537.5537132/1‑94 (MQ=60)
ATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTAT > SRR4302537.5769299/1‑94 (MQ=60)
ATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTAC < SRR4302537.144823/94‑1 (MQ=60)
ATGAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTAC > SRR4302537.5219874/1‑94 (MQ=60)
GAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTT < SRR4302537.2559815/94‑1 (MQ=60)
GAAGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTT < SRR4302537.2436748/94‑1 (MQ=60)
AGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCT > SRR4302537.4854590/1‑94 (MQ=60)
AGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCT > SRR4302537.4873527/1‑94 (MQ=60)
AGCGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCT > SRR4302537.5519120/1‑94 (MQ=60)
CGCAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGC > SRR4302537.4482294/1‑94 (MQ=60)
CAGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCA < SRR4302537.4600407/94‑1 (MQ=60)
AGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAG > SRR4302537.1696564/1‑94 (MQ=60)
AGGCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAG > SRR4302537.56518/1‑94 (MQ=60)
GGCGCTAGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGT < SRR4302537.939389/94‑1 (MQ=60)
GCGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTA < SRR4302537.4196800/94‑1 (MQ=60)
CGCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTAT > SRR4302537.505321/1‑94 (MQ=60)
GCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTTTTACTTCTGCCAGTATG > SRR4302537.3824753/1‑94 (MQ=60)
GCTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATG > SRR4302537.4215294/1‑94 (MQ=60)
CTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGC < SRR4302537.3629819/94‑1 (MQ=60)
CTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGC > SRR4302537.4939545/1‑94 (MQ=60)
CTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGC < SRR4302537.132247/94‑1 (MQ=60)
CTGGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCCGCCAGTATGC > SRR4302537.5970123/1‑94 (MQ=60)
GGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCG > SRR4302537.1420358/1‑94 (MQ=60)
GGCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCG < SRR4302537.3693313/94‑1 (MQ=60)
GCAATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGA > SRR4302537.2674239/1‑94 (MQ=60)
AATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATG > SRR4302537.3700108/1‑94 (MQ=60)
AATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATG < SRR4302537.1334552/94‑1 (MQ=60)
AATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATG < SRR4302537.2003538/94‑1 (MQ=60)
ATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGC > SRR4302537.4799019/1‑94 (MQ=60)
ATACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGC > SRR4302537.3884072/1‑94 (MQ=60)
ATACTGGAGCA‑GGGGCAAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGC > SRR4302537.4322611/1‑94 (MQ=60)
ACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTG > SRR4302537.991953/1‑94 (MQ=60)
ACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTG > SRR4302537.1775593/1‑94 (MQ=60)
ACTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTG > SRR4302537.1015542/1‑94 (MQ=60)
CTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGG > SRR4302537.4819408/1‑94 (MQ=60)
CTGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGG > SRR4302537.1894764/1‑94 (MQ=60)
TGGAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGT < SRR4302537.4279955/94‑1 (MQ=60)
GAGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGG > SRR4302537.408598/1‑94 (MQ=60)
AGCAGGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGT < SRR4302537.5514780/94‑1 (MQ=60)
cagGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTG > SRR4302537.5238960/4‑94 (MQ=60)
cagGGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTG > SRR4302537.1187236/4‑94 (MQ=60)
agGGGG‑AAGTGAACTTCATTGCTTGTCGCCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGA < SRR4302537.5482514/92‑1 (MQ=60)
G‑GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAG < SRR4302537.82907/94‑1 (MQ=60)
G‑GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAG > SRR4302537.4870107/1‑94 (MQ=60)
GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGA > SRR4302537.836912/1‑94 (MQ=60)
GGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAA < SRR4302537.6228911/94‑1 (MQ=60)
GGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAA > SRR4302537.5062088/1‑94 (MQ=60)
GGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAA > SRR4302537.925286/1‑94 (MQ=60)
GG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAAC > SRR4302537.3722162/1‑94 (MQ=60)
G‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGTCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAACG < SRR4302537.4053314/94‑1 (MQ=60)
G‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAACG < SRR4302537.29925/94‑1 (MQ=60)
G‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAACG > SRR4302537.4806215/1‑94 (MQ=60)
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GACCGGACCCATGAAAGGGGCGTGCGTGGGCGCATGTCTGTTCGAAGGTTGGGCGAAAGATGAAGCGCAGGCGCTGGCAATACTGGAGCA‑GGGG‑AAGTGAACTTCATTCCTTGTCACCATGTGAATGCCGTCGGGCCAATGGGCGGTATTACTTCTGCCAGTATGCCGATGCTGGTGGTTGAGAACG > NC_000913/547742‑547928
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Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |