Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	727,030	A→G	L309P (CTG→CCG)	kdpA ←	KdpA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	727,030	0	A	G	100.0%	710.5 / NA	201	L309P (CTG→CCG)	kdpA	KdpA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/80); total (121/80)

Only 100 of 208 total aligned reads displayed.

GTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCAGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCC  >  NC_000913/726940‑727119

gtcACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGa                                                                                         <  2:862973/93‑1 (MQ=255)

gtcACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGa                                                                                         >  1:4755873/1‑93 (MQ=255)

gtcACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGa                                                                                         >  1:4143129/1‑93 (MQ=255)

 tcACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGAt                                                                                        <  1:5461728/93‑1 (MQ=255)

   aCGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGa                                                                                      >  2:1456062/1‑93 (MQ=255)

      aCCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGa                                                                                   >  2:6052023/1‑93 (MQ=255)

      aCCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGa                                                                                   <  2:4194987/93‑1 (MQ=255)

        cGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGAtt                                                                                 >  2:253126/1‑93 (MQ=255)

            aaCAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCTTGCCCAGTGCCAGCGGATGAGGATTAccc                                                                             >  1:4432068/1‑93 (MQ=255)

            aaCAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTAccc                                                                             <  1:3684852/93‑1 (MQ=255)

            aaCAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTAccc                                                                             <  2:6162159/93‑1 (MQ=255)

            aaCAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTGCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTAccc                                                                             >  1:4545958/1‑93 (MQ=255)

             aCAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCt                                                                            >  2:4520538/1‑93 (MQ=255)

               aGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGa                                                                          <  2:5592336/93‑1 (MQ=255)

               aGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGa                                                                          <  1:2086316/93‑1 (MQ=255)

                 gCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAAc                                                                        <  1:1242998/93‑1 (MQ=255)

                   tACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACtt                                                                      >  1:441364/1‑93 (MQ=255)

                   tACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACtt                                                                      >  1:933603/1‑93 (MQ=255)

                    aCTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTc                                                                     <  2:5226068/93‑1 (MQ=255)

                    aCTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTc                                                                     >  2:677820/1‑93 (MQ=255)

                    aCTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTc                                                                     >  1:2935388/1‑93 (MQ=255)

                     cTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCt                                                                    >  1:3791204/1‑93 (MQ=255)

                         ccAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGccc                                                                >  1:621927/1‑93 (MQ=255)

                          cAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCca                                                               <  1:5982683/93‑1 (MQ=255)

                          cAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCca                                                               <  2:3031222/93‑1 (MQ=255)

                           aGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCcac                                                              >  2:4721661/1‑93 (MQ=255)

                              aCGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATc                                                           >  2:5609029/1‑93 (MQ=255)

                               cGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATca                                                          <  1:480316/93‑1 (MQ=255)

                                gCCGAAACGGCCCTCTTTACCTTCCATATTGATGCTGCTGTCCGGTCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATcac                                                         <  2:1391939/93‑1 (MQ=255)

                                  cGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATcacca                                                       <  1:4465536/93‑1 (MQ=255)

                                   gAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATcaccac                                                      >  2:3519674/1‑93 (MQ=255)

                                   gAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATcaccac                                                      <  1:2998275/93‑1 (MQ=255)

                                   gAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATcaccac                                                      >  2:3315933/1‑93 (MQ=255)

                                    aaaCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACg                                                     >  1:1066710/1‑93 (MQ=255)

                                    aaaCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACg                                                     >  2:1635481/1‑93 (MQ=255)

                                    aaaCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACg                                                     >  2:2339769/1‑93 (MQ=255)

                                    aaaCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCAGCCCACATCACCACg                                                     >  2:2570729/1‑93 (MQ=255)

                                     aaCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGc                                                    >  1:519844/1‑93 (MQ=255)

                                     aaCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGc                                                    <  2:4982583/93‑1 (MQ=255)

                                      aCGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGcc                                                   >  2:2992755/1‑93 (MQ=255)

                                        ggCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACCTCACCACGCCTa                                                 >  2:3065404/1‑93 (MQ=255)

                                        ggCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTa                                                 <  1:2436017/93‑1 (MQ=255)

                                         gCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTAc                                                >  2:3939620/1‑93 (MQ=255)

                                         gCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTAc                                                <  1:6057235/93‑1 (MQ=255)

                                          ctctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACg                                               >  1:179317/1‑93 (MQ=255)

                                          ctctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACg                                               <  1:807739/93‑1 (MQ=255)

                                          ctctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACg                                               >  1:1471993/1‑93 (MQ=255)

                                           tctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGc                                              >  1:5797962/1‑93 (MQ=255)

                                           tctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGc                                              >  1:6468198/1‑93 (MQ=255)

                                            ctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCa                                             <  1:4261696/93‑1 (MQ=255)

                                            ctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCa                                             <  1:4525737/93‑1 (MQ=255)

                                            ctctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCa                                             >  1:4097874/1‑93 (MQ=255)

                                              ctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGa                                           >  2:4814654/1‑93 (MQ=255)

                                              ctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGa                                           >  1:339167/1‑93 (MQ=255)

                                              ctTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGa                                           <  2:443995/93‑1 (MQ=255)

                                               tttACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGAt                                          <  2:2908134/93‑1 (MQ=255)

                                                 tgccTACCATATTGATGCTGGTGTCCGTGCCCAGTGCCAGCGGATGAGGATTCCCCTGAACTTCGGCCCACATCACCACGCCTACGCAGATGa                                        <  2:6107409/91‑1 (MQ=255)

                                                 tACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCTACATCACCACGCCTACGCAGATGa                                        <  2:1143017/93‑1 (MQ=255)

                                                 tACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGa                                        >  2:2798396/1‑93 (MQ=255)

                                                         atatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATc                                >  2:1737699/1‑93 (MQ=255)

                                                         atatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATc                                >  2:3081386/1‑93 (MQ=255)

                                                         atatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATc                                <  1:1820822/93‑1 (MQ=255)

                                                         atatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATc                                >  1:271118/1‑93 (MQ=255)

                                                          tatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCa                               >  1:1172473/1‑93 (MQ=255)

                                                          tatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCa                               >  1:4300324/1‑93 (MQ=255)

                                                          tatTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCa                               >  1:469877/1‑93 (MQ=255)

                                                          tatTGATGCTGCTGTCCGTGACCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCa                               >  2:6225223/1‑93 (MQ=255)

                                                            ttGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGCACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACt                             >  1:1147466/1‑93 (MQ=255)

                                                            ttGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACt                             <  1:2175802/93‑1 (MQ=255)

                                                            ttGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACt                             <  1:5133301/93‑1 (MQ=255)

                                                              gATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGa                           <  2:2414167/93‑1 (MQ=255)

                                                               aTGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGAc                          >  1:1419788/1‑93 (MQ=255)

                                                               aTGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGAc                          <  2:6376077/93‑1 (MQ=255)

                                                                tgctgcTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACa                         <  1:6351690/93‑1 (MQ=255)

                                                                  ctgctgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATc                       >  1:2153889/1‑93 (MQ=255)

                                                                  ctgctgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATc                       >  1:214560/1‑93 (MQ=255)

                                                                   tgctgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCg                      >  2:1675132/1‑93 (MQ=255)

                                                                   tgctgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCg                      >  1:5915870/1‑93 (MQ=255)

                                                                   tgctgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCg                      <  2:1246364/93‑1 (MQ=255)

                                                                      tgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGATCTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGccc                   <  1:3258910/93‑1 (MQ=255)

                                                                      tgTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGccc                   >  2:5257612/1‑93 (MQ=255)

                                                                       gTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCca                  >  2:5417053/1‑93 (MQ=255)

                                                                          cGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAg               >  2:35952/1‑93 (MQ=255)

                                                                            tGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCa             <  2:5511357/93‑1 (MQ=255)

                                                                            tGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCa             >  1:6175395/1‑93 (MQ=255)

                                                                             gCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCaa            <  1:5639581/93‑1 (MQ=255)

                                                                              cccAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCacc           >  2:388016/1‑91 (MQ=255)

                                                                               ccAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACa          >  1:3903696/1‑93 (MQ=255)

                                                                               ccAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACa          >  2:3804075/1‑93 (MQ=255)

                                                                                cAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACAt         >  1:1037091/1‑93 (MQ=255)

                                                                                cAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACAt         >  2:500260/1‑93 (MQ=255)

                                                                                 aGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATg        >  2:4064964/1‑93 (MQ=255)

                                                                                 aGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATg        <  2:1954261/93‑1 (MQ=255)

                                                                                  gTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACAACACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATgc       <  1:4576602/93‑1 (MQ=255)

                                                                                   tGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCGACATgcg      <  1:3597483/93‑1 (MQ=255)

                                                                                   tGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATgcg      <  2:5805103/93‑1 (MQ=255)

                                                                                   tGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATgcg      >  1:3863700/1‑93 (MQ=255)

                                                                                   tGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATgcg      <  1:870475/93‑1 (MQ=255)

                                                                                    gCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCCCCCACAGCAACATgcac     >  2:1778501/1‑91 (MQ=255)

                                                                                     ccAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGcc    >  1:2377597/1‑93 (MQ=255)

GTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCAGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCC  >  NC_000913/726940‑727119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCGTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCAGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCCTGGC  >  NC_000913/726937‑727123

GTCGTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCG                                                                                               >  SRR4302537.1151378/1‑94 (MQ=60)

 TCGTCGCGACCGCAAACAGGCGACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGG                                                                                              <  SRR4302537.3151249/94‑1 (MQ=60)

  CGTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGA                                                                                             >  SRR4302537.4172028/1‑94 (MQ=60)

  CGTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGA                                                                                             >  SRR4302537.4788729/1‑94 (MQ=60)

    TCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATG                                                                                           <  SRR4302537.5498984/94‑1 (MQ=60)

      ACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAG                                                                                         <  SRR4302537.2412576/94‑1 (MQ=60)

       CGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGG                                                                                        <  SRR4302537.3705900/94‑1 (MQ=60)

        GACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGA                                                                                       >  SRR4302537.4154506/1‑94 (MQ=60)

        GACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGA                                                                                       >  SRR4302537.1393057/1‑94 (MQ=60)

         ACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGAT                                                                                      >  SRR4302537.2140338/1‑94 (MQ=60)

          CCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATT                                                                                     >  SRR4302537.3079935/1‑94 (MQ=60)

          CCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATT                                                                                     <  SRR4302537.4554595/94‑1 (MQ=60)

           CGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTA                                                                                    <  SRR4302537.4477776/94‑1 (MQ=60)

           CGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTA                                                                                    >  SRR4302537.4567112/1‑94 (MQ=60)

              AAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCTTGCCCAGTGCCAGCGGATGAGGATTACCC                                                                                 >  SRR4302537.4462673/1‑94 (MQ=60)

              AAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTGCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCC                                                                                 >  SRR4302537.4577419/1‑94 (MQ=60)

               AACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCT                                                                                <  SRR4302537.3710768/94‑1 (MQ=60)

                  AGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAA                                                                             >  SRR4302537.1965113/1‑94 (MQ=60)

                  AGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAA                                                                             <  SRR4302537.2101026/94‑1 (MQ=60)

                   GGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAAC                                                                            <  SRR4302537.6218686/94‑1 (MQ=60)

                    GCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACT                                                                           <  SRR4302537.1251658/94‑1 (MQ=60)

                     CTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTT                                                                          >  SRR4302537.5171613/1‑94 (MQ=60)

                     CTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTT                                                                          >  SRR4302537.940036/1‑94 (MQ=60)

                     CTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTT                                                                          >  SRR4302537.444430/1‑94 (MQ=60)

                      TACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTC                                                                         >  SRR4302537.2955998/1‑94 (MQ=60)

                       ACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCT                                                                        >  SRR4302537.3817811/1‑94 (MQ=60)

                       ACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCT                                                                        >  SRR4302537.788563/1‑94 (MQ=60)

                       ACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCT                                                                        >  SRR4302537.5633056/1‑94 (MQ=60)

                        CTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTG                                                                       >  SRR4302537.870663/1‑94 (MQ=60)

                         TGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGC                                                                      <  SRR4302537.3891722/94‑1 (MQ=60)

                           ACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCC                                                                    >  SRR4302537.4303306/1‑94 (MQ=60)

                           ACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCC                                                                    >  SRR4302537.626162/1‑94 (MQ=60)

                             CAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCAC                                                                  <  SRR4302537.6023748/94‑1 (MQ=60)

                                  CGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCAC                                                             <  SRR4302537.483609/94‑1 (MQ=60)

                                   GCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACC                                                            >  SRR4302537.2167842/1‑94 (MQ=60)

                                     CGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCAC                                                          <  SRR4302537.2268675/94‑1 (MQ=60)

                                     CGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCAC                                                          >  SRR4302537.5787705/1‑94 (MQ=60)

                                     CGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCAC                                                          <  SRR4302537.4496417/94‑1 (MQ=60)

                                      GAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACG                                                         >  SRR4302537.1074057/1‑94 (MQ=60)

                                      GAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACG                                                         <  SRR4302537.3019177/94‑1 (MQ=60)

                                      GAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACG                                                         <  SRR4302537.4688512/94‑1 (MQ=60)

                                       AAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGC                                                        >  SRR4302537.523420/1‑94 (MQ=60)

                                       AAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGC                                                        >  SRR4302537.802797/1‑94 (MQ=60)

                                       AAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGC                                                        >  SRR4302537.3991044/1‑94 (MQ=60)

                                        AACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCC                                                       >  SRR4302537.3018225/1‑94 (MQ=60)

                                         ACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCT                                                      <  SRR4302537.4993856/94‑1 (MQ=60)

                                           GGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTAC                                                    <  SRR4302537.2453178/94‑1 (MQ=60)

                                           GGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTAC                                                    <  SRR4302537.6002733/94‑1 (MQ=60)

                                            GCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACG                                                   <  SRR4302537.6098841/94‑1 (MQ=60)

                                            GCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACG                                                   >  SRR4302537.180595/1‑94 (MQ=60)

                                            GCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACG                                                   >  SRR4302537.2872413/1‑94 (MQ=60)

                                            GCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACG                                                   >  SRR4302537.1482224/1‑94 (MQ=60)

                                             CTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGC                                                  >  SRR4302537.6512027/1‑94 (MQ=60)

                                             CTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGC                                                  <  SRR4302537.813282/94‑1 (MQ=60)

                                             CTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGC                                                  >  SRR4302537.5837711/1‑94 (MQ=60)

                                              TCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCA                                                 >  SRR4302537.4126482/1‑94 (MQ=60)

                                               CTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAG                                                <  SRR4302537.4557051/94‑1 (MQ=60)

                                               CTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAG                                                <  SRR4302537.4291310/94‑1 (MQ=60)

                                                TCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGA                                               >  SRR4302537.341519/1‑94 (MQ=60)

                                                TCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGA                                               >  SRR4302537.1686705/1‑94 (MQ=60)

                                                 CTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGAT                                              <  SRR4302537.116707/94‑1 (MQ=60)

                                                  ctgACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATTAGGATTACCCTGAACTTCTGCCCACAACACCACGCCTACGCAGATG                                             <  SRR4302537.1871538/91‑1 (MQ=60)

                                                  TTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATG                                             >  SRR4302537.4595037/1‑94 (MQ=60)

                                                  TTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATG                                             >  SRR4302537.409778/1‑94 (MQ=60)

                                                     ACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACA                                          <  SRR4302537.4809366/94‑1 (MQ=60)

                                                      CCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAA                                         >  SRR4302537.2201411/1‑94 (MQ=60)

                                                       CTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAA                                        >  SRR4302537.2177761/1‑94 (MQ=60)

                                                       CTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAA                                        <  SRR4302537.1114446/94‑1 (MQ=60)

                                                        TTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAA                                       >  SRR4302537.1198126/1‑94 (MQ=60)

                                                         TCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAA                                      >  SRR4302537.3766777/1‑94 (MQ=60)

                                                         TCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAA                                      >  SRR4302537.6195118/1‑94 (MQ=60)

                                                          CCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAAT                                     >  SRR4302537.6430248/1‑94 (MQ=60)

                                                           CATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATC                                    >  SRR4302537.273026/1‑94 (MQ=60)

                                                            ATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCA                                   >  SRR4302537.473097/1‑94 (MQ=60)

                                                            ATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCA                                   >  SRR4302537.2630535/1‑94 (MQ=60)

                                                            ATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCA                                   <  SRR4302537.1833512/94‑1 (MQ=60)

                                                            ATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCA                                   >  SRR4302537.1180631/1‑94 (MQ=60)

                                                            ATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCA                                   >  SRR4302537.4330210/1‑94 (MQ=60)

                                                              ATTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGCACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACT                                 >  SRR4302537.1155444/1‑94 (MQ=60)

                                                               TTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTG                                <  SRR4302537.5168672/94‑1 (MQ=60)

                                                               TTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTG                                <  SRR4302537.5249627/94‑1 (MQ=60)

                                                               TTGATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTG                                <  SRR4302537.2191139/94‑1 (MQ=60)

                                                                 GATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGAC                              >  SRR4302537.1429668/1‑94 (MQ=60)

                                                                  ATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACA                             >  SRR4302537.4740741/1‑94 (MQ=60)

                                                                  ATGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCGACGCAGATGACAAAAATCACTGACA                             >  SRR4302537.6290947/1‑94 (MQ=60)

                                                                   TGCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACAT                            <  SRR4302537.6395055/94‑1 (MQ=60)

                                                                    GCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATC                           >  SRR4302537.216089/1‑94 (MQ=60)

                                                                    GCTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATC                           >  SRR4302537.2169072/1‑94 (MQ=60)

                                                                     CTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCG                          >  SRR4302537.34174/1‑94 (MQ=60)

                                                                     CTGCTGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCG                          >  SRR4302537.5956465/1‑94 (MQ=60)

                                                                         TGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGATCTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCA                      <  SRR4302537.3281889/94‑1 (MQ=60)

                                                                         TGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCA                      >  SRR4302537.1056790/1‑94 (MQ=60)

                                                                         TGTCCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCA                      <  SRR4302537.4446467/94‑1 (MQ=60)

                                                                            CCGTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAG                   <  SRR4302537.3436772/94‑1 (MQ=60)

                                                                              GTGCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCA                 >  SRR4302537.6217925/1‑94 (MQ=60)

                                                                                GCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAAC               <  SRR4302537.5678176/94‑1 (MQ=60)

                                                                                GCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAAC               <  SRR4302537.4179342/94‑1 (MQ=60)

                                                                                GCCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAAC               >  SRR4302537.5920005/1‑94 (MQ=60)

                                                                                 CCCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACA              >  SRR4302537.3930987/1‑94 (MQ=60)

                                                                                  CCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACAT             >  SRR4302537.4951462/1‑94 (MQ=60)

                                                                                  CCAGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACAT             >  SRR4302537.1044231/1‑94 (MQ=60)

                                                                                   CAGTGCCAGCGGATGAGGATTTCCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATG            <  SRR4302537.1829012/94‑1 (MQ=60)

                                                                                    AGTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGC           >  SRR4302537.4422295/1‑94 (MQ=60)

                                                                                     GTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCG          <  SRR4302537.6075782/94‑1 (MQ=60)

                                                                                     GTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCG          <  SRR4302537.905797/94‑1 (MQ=60)

                                                                                     GTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCG          >  SRR4302537.3890749/1‑94 (MQ=60)

                                                                                     GTGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACAACACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCG          <  SRR4302537.4608275/94‑1 (MQ=60)

                                                                                      TGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCGACATGCGC         <  SRR4302537.3622839/94‑1 (MQ=60)

                                                                                      TGCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGC         <  SRR4302537.876454/94‑1 (MQ=60)

                                                                                       GCCAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCC        >  SRR4302537.2394351/1‑94 (MQ=60)

                                                                                       GCCAGCGGATGAGGATGACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCC        <  SRR4302537.1447924/94‑1 (MQ=60)

                                                                                         CAGCGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCC      >  SRR4302537.3827573/1‑94 (MQ=60)

                                                                                            CGGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCCTGG   <  SRR4302537.3449421/94‑1 (MQ=60)

                                                                                             TGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCCTGGC  >  SRR4302537.1428690/1‑94 (MQ=60)

                                                                                             GGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCCTGGC  <  SRR4302537.3432621/94‑1 (MQ=60)

GTCGTCACGACCGCAAACAGGCTACTGACCAGCACGCCGAAACGGCTCTCTTTACCTTCCATATTGATGCTGCTGTCCGTGCCCAGTGCCAGCAGATGAGGATTACCCTGAACTTCTGCCCACATCACCACGCCTACGCAGATGACAAAAATCACTGACATCGCCCACAGCAACATGCGCCCCTGGC  >  NC_000913/726937‑727123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`