Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	800,245	T→C	D88D (GAT→GAC)	ybhH →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	800,245	0	T	C	100.0%	831.9 / NA	239	D88D (GAT→GAC)	ybhH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (120/119); total (120/119)

Only 100 of 245 total aligned reads displayed.

TAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGATACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCG  >  NC_000913/800155‑800334

tAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGacac                                                                                         <  1:4594073/93‑1 (MQ=255)

  aaGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCa                                                                                       <  1:5088679/93‑1 (MQ=255)

   aGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGAcaccac                                                                                      >  2:5323571/1‑93 (MQ=255)

     tCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGc                                                                                    >  1:245791/1‑93 (MQ=255)

       gacATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCt                                                                                  >  1:5134027/3‑93 (MQ=255)

       gCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCt                                                                                  >  1:3766977/1‑93 (MQ=255)

        ccATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTa                                                                                 >  2:6467258/1‑93 (MQ=255)

        ccATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTa                                                                                 >  2:5875620/1‑93 (MQ=255)

        ccATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTa                                                                                 >  1:82582/1‑93 (MQ=255)

          attattAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAAc                                                                               <  1:856555/93‑1 (MQ=255)

           ttattaGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACt                                                                              <  1:6367154/93‑1 (MQ=255)

           ttattaGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACt                                                                              >  1:4089396/1‑93 (MQ=255)

           ttattaGCCGTTCCAGCGATCCACGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACt                                                                              >  1:405109/1‑93 (MQ=255)

            tattaGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTg                                                                             >  2:4956109/1‑93 (MQ=255)

              ttaGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCg                                                                           >  1:4149404/1‑93 (MQ=255)

               taGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCgg                                                                          >  1:187828/1‑93 (MQ=255)

                 gCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGTTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCa                                                                        <  1:2357065/93‑1 (MQ=255)

                  ccGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTCACTGCGGCaa                                                                       >  2:3364339/1‑93 (MQ=255)

                  ccGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCaa                                                                       <  2:3920005/93‑1 (MQ=255)

                    gTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAata                                                                     >  2:2350943/1‑93 (MQ=255)

                    gTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGGGTCGACCCCACGCCTAACTGCGGCAata                                                                     >  2:1271647/1‑93 (MQ=255)

                      tCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATg                                                                   >  1:1032724/1‑93 (MQ=255)

                        cAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCt                                                                 <  2:552237/93‑1 (MQ=255)

                         aGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTg                                                                >  1:3552/1‑93 (MQ=255)

                          gCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGt                                                               >  1:1242981/1‑93 (MQ=255)

                          gCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGt                                                               <  1:4835666/93‑1 (MQ=255)

                          gCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGt                                                               >  1:2247499/1‑93 (MQ=255)

                            gATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCt                                                             >  2:1494845/1‑93 (MQ=255)

                             aTCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTg                                                            <  2:5808391/93‑1 (MQ=255)

                             aTCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTg                                                            >  2:4211062/1‑93 (MQ=255)

                             aTCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTg                                                            >  2:3070265/1‑93 (MQ=255)

                             aTCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTg                                                            >  2:3841760/1‑93 (MQ=255)

                             aTCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTg                                                            <  1:2165273/93‑1 (MQ=255)

                              tCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTgg                                                           >  2:5643099/1‑93 (MQ=255)

                               ccGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGgt                                                          <  1:331390/93‑1 (MQ=255)

                                 gcgTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGgtgt                                                        <  2:1399078/93‑1 (MQ=255)

                                   gTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTg                                                      <  1:2203807/93‑1 (MQ=255)

                                    tGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTgg                                                     <  1:2290240/93‑1 (MQ=255)

                                    tGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTgg                                                     <  1:720143/93‑1 (MQ=255)

                                    tGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTgg                                                     <  1:2779890/93‑1 (MQ=255)

                                    tGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTgg                                                     <  2:2431081/93‑1 (MQ=255)

                                    tGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTgg                                                     >  2:4563412/1‑93 (MQ=255)

                                    tGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGGTCATGAGCAACGTGTCGACACCACGCCTAACTGAGGCAATATGCTGTCTGGTGTTgg                                                     >  1:1509515/1‑93 (MQ=255)

                                     gCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTggg                                                    <  1:2978529/93‑1 (MQ=255)

                                      cTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTgggg                                                   >  1:3245495/1‑93 (MQ=255)

                                       tGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGc                                                  >  1:64844/1‑93 (MQ=255)

                                        gATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCa                                                 >  1:4695145/1‑93 (MQ=255)

                                        gATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCa                                                 >  2:4338910/1‑93 (MQ=255)

                                         aTGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAt                                                >  1:6311410/1‑93 (MQ=255)

                                         aTGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAt                                                >  1:1958043/1‑93 (MQ=255)

                                         aTGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGAGGCAt                                                <  1:3697693/93‑1 (MQ=255)

                                          tGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAtt                                               <  2:830019/93‑1 (MQ=255)

                                           gTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTc                                              <  1:5813165/93‑1 (MQ=255)

                                            tCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCg                                             <  2:5109192/93‑1 (MQ=255)

                                                ttATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCAt                                         >  2:432280/1‑93 (MQ=255)

                                                 tATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCAtt                                        >  2:1166715/1‑93 (MQ=255)

                                                 tATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCAtt                                        <  1:2057185/93‑1 (MQ=255)

                                                  aTCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGTTGTTGGGGCATTCGCCATTg                                       <  1:4614418/93‑1 (MQ=255)

                                                   tCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGa                                      >  2:3107264/1‑93 (MQ=255)

                                                          gcgcAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGt                               <  2:3676176/93‑1 (MQ=255)

                                                          gcgcAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGt                               <  1:910154/93‑1 (MQ=255)

                                                          gcgcAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGt                               <  2:547345/93‑1 (MQ=255)

                                                            gcAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGttt                             <  2:2151411/93‑1 (MQ=255)

                                                            gcAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGttt                             <  1:24846/93‑1 (MQ=255)

                                                              aGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGa                           >  2:2007371/1‑93 (MQ=255)

                                                              aGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGa                           <  2:3220684/93‑1 (MQ=255)

                                                               ggTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGAt                          >  2:71377/1‑93 (MQ=255)

                                                               ggTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGAt                          >  2:4437223/1‑93 (MQ=255)

                                                               ggTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGAt                          <  2:5718906/93‑1 (MQ=255)

                                                                gTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGAtt                         <  2:6125072/93‑1 (MQ=255)

                                                                gTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGAtt                         <  1:1729012/93‑1 (MQ=255)

                                                                gTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATCCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGAtt                         <  1:3459551/93‑1 (MQ=255)

                                                                 tAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTg                        >  1:4371128/1‑93 (MQ=255)

                                                                  aaTCGTTCATGAGCAACGTGTCGACGCCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGc                       <  2:3949516/93‑1 (MQ=255)

                                                                   aTCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCa                      <  2:1821551/93‑1 (MQ=255)

                                                                    tCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAg                     <  2:4868453/93‑1 (MQ=255)

                                                                       ttCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAACTGGTTTGATTGCAGCGa                  >  1:3927217/1‑93 (MQ=255)

                                                                       ttCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGa                  >  2:1199752/1‑93 (MQ=255)

                                                                        tCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGAc                 <  2:3313851/93‑1 (MQ=255)

                                                                         cATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACt                >  2:1317356/1‑93 (MQ=255)

                                                                          aTGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACtt               >  2:2590967/1‑93 (MQ=255)

                                                                          aTGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGCGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACtt               >  1:1320650/1‑93 (MQ=255)

                                                                           tGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTc              <  1:3029343/93‑1 (MQ=255)

                                                                            gAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCg             >  1:3981824/1‑93 (MQ=255)

                                                                            gAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCg             >  1:768761/1‑93 (MQ=255)

                                                                            gAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCACTTTAAATAGGTTTTTTTCAGCGACTTcc             >  2:2833149/1‑92 (MQ=255)

                                                                             aGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGc            <  1:4075669/93‑1 (MQ=255)

                                                                             aGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGc            <  2:377797/93‑1 (MQ=255)

                                                                                aaCGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAg         >  1:1467396/1‑93 (MQ=255)

                                                                                 aCGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGt        >  2:4721828/1‑93 (MQ=255)

                                                                                 aCGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGt        >  2:107435/1‑93 (MQ=255)

                                                                                  cGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGtt       >  1:3076537/1‑93 (MQ=255)

                                                                                   gtgtCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTa      >  1:2858851/1‑93 (MQ=255)

                                                                                   gtgtCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTa      >  2:2940068/1‑93 (MQ=255)

                                                                                    tgtCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTAc     <  2:3526347/93‑1 (MQ=255)

                                                                                     gtCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACt    >  1:5661315/1‑93 (MQ=255)

                                                                                     gtCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACt    >  2:2740851/1‑93 (MQ=255)

                                                                                     gtCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACt    <  1:6211915/93‑1 (MQ=255)

                                                                                      tCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTc   >  1:736688/1‑93 (MQ=255)

                                                                                       cGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTcg  >  1:5549105/1‑93 (MQ=255)

TAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGATACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCG  >  NC_000913/800155‑800334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGTAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGATACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCGCGTA  >  NC_000913/800153‑800338

AGTAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACA                                                                                              >  SRR4302537.2069/1‑94 (MQ=60)

AGTAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACA                                                                                              <  SRR4302537.2878568/94‑1 (MQ=60)

  TAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACC                                                                                            >  SRR4302537.1267995/1‑94 (MQ=60)

  TAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACC                                                                                            <  SRR4302537.4625846/94‑1 (MQ=60)

    AAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCAC                                                                                          <  SRR4302537.2265609/94‑1 (MQ=60)

    AAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCAC                                                                                          <  SRR4302537.5123710/94‑1 (MQ=60)

    AAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCAC                                                                                          <  SRR4302537.5403429/94‑1 (MQ=60)

      GTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGC                                                                                        >  SRR4302537.247533/1‑94 (MQ=60)

       TCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCC                                                                                       <  SRR4302537.5459264/94‑1 (MQ=60)

        CGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCT                                                                                      >  SRR4302537.3793427/1‑94 (MQ=60)

        CGACATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCT                                                                                      >  SRR4302537.5169400/1‑94 (MQ=60)

         GCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTA                                                                                     >  SRR4302537.83187/1‑94 (MQ=60)

           CATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAAC                                                                                   >  SRR4302537.2885346/1‑94 (MQ=60)

            ATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACT                                                                                  >  SRR4302537.4117953/1‑94 (MQ=60)

            ATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACT                                                                                  >  SRR4302537.2112333/1‑94 (MQ=60)

            ATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACT                                                                                  <  SRR4302537.862435/94‑1 (MQ=60)

            ATTATTAGCCGTTCCAGCGATCCACGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACT                                                                                  >  SRR4302537.407918/1‑94 (MQ=60)

             TTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTG                                                                                 <  SRR4302537.6410578/94‑1 (MQ=60)

               ATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCG                                                                               >  SRR4302537.4178368/1‑94 (MQ=60)

                TTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGG                                                                              >  SRR4302537.189160/1‑94 (MQ=60)

                TTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGG                                                                              >  SRR4302537.791824/1‑94 (MQ=60)

                 TAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGC                                                                             <  SRR4302537.715711/94‑1 (MQ=60)

                   GCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGTTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAA                                                                           <  SRR4302537.2373689/94‑1 (MQ=60)

                       TTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATG                                                                       <  SRR4302537.2860704/94‑1 (MQ=60)

                       TTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATG                                                                       >  SRR4302537.1039838/1‑94 (MQ=60)

                        TCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGC                                                                      <  SRR4302537.312267/94‑1 (MQ=60)

                         CCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCT                                                                     <  SRR4302537.2962858/94‑1 (MQ=60)

                          CAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATCTGCTG                                                                    >  SRR4302537.153303/1‑94 (MQ=60)

                          CAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTG                                                                    >  SRR4302537.3583/1‑94 (MQ=60)

                           AGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGT                                                                   >  SRR4302537.4780998/1‑94 (MQ=60)

                           AGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGT                                                                   <  SRR4302537.1898226/94‑1 (MQ=60)

                           AGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGT                                                                   >  SRR4302537.1251641/1‑94 (MQ=60)

                           AGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGT                                                                   >  SRR4302537.2263358/1‑94 (MQ=60)

                            GCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTC                                                                  <  SRR4302537.4869056/94‑1 (MQ=60)

                             CGATCCGCGTGCTGATGTCTATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCT                                                                 <  SRR4302537.3072210/94‑1 (MQ=60)

                             CGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCT                                                                 <  SRR4302537.3035548/94‑1 (MQ=60)

                             CGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCT                                                                 <  SRR4302537.5593904/94‑1 (MQ=60)

                              GATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTG                                                                <  SRR4302537.4097457/94‑1 (MQ=60)

                              GATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTG                                                                >  SRR4302537.2593688/1‑94 (MQ=60)

                               ATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGG                                                               <  SRR4302537.2180526/94‑1 (MQ=60)

                               ATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGG                                                               <  SRR4302537.1933434/94‑1 (MQ=60)

                                 TCGCGTGGTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTG                                                             <  SRR4302537.5827132/94‑1 (MQ=60)

                                 CCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCCCGCCTAACTGCGGCACTATGCTGTCTGGTG                                                             >  SRR4302537.836733/1‑94 (MQ=60)

                                 CCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTG                                                             <  SRR4302537.333685/94‑1 (MQ=60)

                                   GCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTT                                                           <  SRR4302537.734647/94‑1 (MQ=60)

                                   GCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTT                                                           <  SRR4302537.1499812/94‑1 (MQ=60)

                                    CGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTG                                                          <  SRR4302537.4453352/94‑1 (MQ=60)

                                     GTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGG                                                         <  SRR4302537.896870/94‑1 (MQ=60)

                                     GTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGG                                                         <  SRR4302537.2219349/94‑1 (MQ=60)

                                     GTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGGTCATGAGCAACGTGTCGACACCACGCCTAACTGAGGCAATATGCTGTCTGGTGTTGG                                                         >  SRR4302537.1520071/1‑94 (MQ=60)

                                      TGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGG                                                        <  SRR4302537.725062/94‑1 (MQ=60)

                                      TGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGG                                                        <  SRR4302537.2306414/94‑1 (MQ=60)

                                      TGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGG                                                        <  SRR4302537.2426423/94‑1 (MQ=60)

                                      TGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGG                                                        <  SRR4302537.3383246/94‑1 (MQ=60)

                                      TGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGG                                                        <  SRR4302537.2799329/94‑1 (MQ=60)

                                       GCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGG                                                       >  SRR4302537.3268367/1‑94 (MQ=60)

                                       GCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGG                                                       <  SRR4302537.2999365/94‑1 (MQ=60)

                                       GCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGG                                                       <  SRR4302537.6410231/94‑1 (MQ=60)

                                        CTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGC                                                      >  SRR4302537.2639527/1‑94 (MQ=60)

                                        CTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGC                                                      >  SRR4302537.65324/1‑94 (MQ=60)

                                         TGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCA                                                     >  SRR4302537.4727622/1‑94 (MQ=60)

                                         TGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCA                                                     <  SRR4302537.4176094/94‑1 (MQ=60)

                                          GATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAT                                                    <  SRR4302537.6094622/94‑1 (MQ=60)

                                          GATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAT                                                    >  SRR4302537.4915159/1‑94 (MQ=60)

                                          GATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAT                                                    >  SRR4302537.6354615/1‑94 (MQ=60)

                                          GATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCAT                                                    >  SRR4302537.1971667/1‑94 (MQ=60)

                                           ATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATT                                                   <  SRR4302537.4634128/94‑1 (MQ=60)

                                           ATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGAGGCATT                                                   <  SRR4302537.3723711/94‑1 (MQ=60)

                                            TGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTC                                                  <  SRR4302537.399509/94‑1 (MQ=60)

                                             GTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCG                                                 <  SRR4302537.5853012/94‑1 (MQ=60)

                                                GATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCA                                              <  SRR4302537.3088066/94‑1 (MQ=60)

                                                 ATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCAT                                             <  SRR4302537.4684647/94‑1 (MQ=60)

                                                   TATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTG                                           <  SRR4302537.2071624/94‑1 (MQ=60)

                                                   TATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTG                                           <  SRR4302537.715501/94‑1 (MQ=60)

                                                    ATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGTTGTTGGGGCATTCGCCATTGA                                          <  SRR4302537.4646371/94‑1 (MQ=60)

                                                    ATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGA                                          >  SRR4302537.3786764/1‑94 (MQ=60)

                                                    ATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGA                                          >  SRR4302537.4023297/1‑94 (MQ=60)

                                                      CTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAA                                        <  SRR4302537.1081435/94‑1 (MQ=60)

                                                        GTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAAT                                      <  SRR4302537.1824900/94‑1 (MQ=60)

                                                        GTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAAT                                      <  SRR4302537.3666036/94‑1 (MQ=60)

                                                          TTGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGG                                    >  SRR4302537.1532118/1‑94 (MQ=60)

                                                           TGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGTCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGT                                   <  SRR4302537.4587387/94‑1 (MQ=60)

                                                           TGCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGT                                   >  SRR4302537.2460617/1‑94 (MQ=60)

                                                            GCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTT                                  <  SRR4302537.4112390/94‑1 (MQ=60)

                                                            GCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTT                                  <  SRR4302537.916436/94‑1 (MQ=60)

                                                            GCGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTT                                  <  SRR4302537.502541/94‑1 (MQ=60)

                                                             CGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTT                                 >  SRR4302537.2267312/1‑94 (MQ=60)

                                                             CGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTT                                 >  SRR4302537.2019751/1‑94 (MQ=60)

                                                             CGCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGATGTTGGGGCATTCGCCATTGAAAATGGTTT                                 >  SRR4302537.2201609/1‑94 (MQ=60)

                                                              GCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTG                                <  SRR4302537.25042/94‑1 (MQ=60)

                                                              GCAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTG                                >  SRR4302537.141554/1‑94 (MQ=60)

                                                               CAGGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGA                               <  SRR4302537.3855388/94‑1 (MQ=60)

                                                                 GGTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATT                             >  SRR4302537.6408492/1‑94 (MQ=60)

                                                                  GTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTG                            >  SRR4302537.2120643/1‑94 (MQ=60)

                                                                  GTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTG                            >  SRR4302537.4401331/1‑94 (MQ=60)

                                                                  GTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTG                            <  SRR4302537.1741084/94‑1 (MQ=60)

                                                                  GTAATCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATCCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTG                            <  SRR4302537.3484010/94‑1 (MQ=60)

                                                                      TCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGC                        <  SRR4302537.4685751/94‑1 (MQ=60)

                                                                      TCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGC                        <  SRR4302537.2233708/94‑1 (MQ=60)

                                                                      TCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGC                        >  SRR4302537.4313517/1‑94 (MQ=60)

                                                                      TCGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGC                        >  SRR4302537.761112/1‑94 (MQ=60)

                                                                       CGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCG                       <  SRR4302537.771116/94‑1 (MQ=60)

                                                                       CGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCG                       >  SRR4302537.5138218/1‑94 (MQ=60)

                                                                       CGTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCG                       >  SRR4302537.3937033/1‑94 (MQ=60)

                                                                        GTTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAACTGGTTTGATTGCAGCGA                      >  SRR4302537.3954658/1‑94 (MQ=60)

                                                                         TTCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGAT                     >  SRR4302537.4130116/1‑94 (MQ=60)

                                                                          TCATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACT                    >  SRR4302537.23597/1‑94 (MQ=60)

                                                                           CATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGCGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTT                   >  SRR4302537.1329856/1‑94 (MQ=60)

                                                                            ATGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTATTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTC                  <  SRR4302537.3475861/94‑1 (MQ=60)

                                                                             TGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCG                 <  SRR4302537.3050462/94‑1 (MQ=60)

                                                                             TGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCG                 >  SRR4302537.774032/1‑94 (MQ=60)

                                                                             TGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCG                 >  SRR4302537.4009699/1‑94 (MQ=60)

                                                                             TGAGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCG                 >  SRR4302537.4009700/1‑94 (MQ=60)

                                                                              GAGCACCGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGC                <  SRR4302537.3642467/94‑1 (MQ=60)

                                                                               AGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCC               <  SRR4302537.4104127/94‑1 (MQ=60)

                                                                               AGCAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCC               >  SRR4302537.2484683/1‑94 (MQ=60)

                                                                               AGCAACGCGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGACAACGGTTTGATTGCAGCGACTTCGCC               >  SRR4302537.3599256/1‑94 (MQ=60)

                                                                                 CAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAG             <  SRR4302537.6344587/94‑1 (MQ=60)

                                                                                 CAACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAG             >  SRR4302537.1477601/1‑94 (MQ=60)

                                                                                  AACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGT            >  SRR4302537.6443287/1‑94 (MQ=60)

                                                                                  AACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGT            >  SRR4302537.904032/1‑94 (MQ=60)

                                                                                   ACGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTT           >  SRR4302537.3097967/1‑94 (MQ=60)

                                                                                    CGTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTA          >  SRR4302537.2878898/1‑94 (MQ=60)

                                                                                     GTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTAC         <  SRR4302537.3313327/94‑1 (MQ=60)

                                                                                     GTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTAC         <  SRR4302537.1421963/94‑1 (MQ=60)

                                                                                     GTGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGATTGATTGCAGCGACTTCGCCAGTTAC         >  SRR4302537.3495430/1‑94 (MQ=60)

                                                                                      TGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACT        >  SRR4302537.5964721/1‑94 (MQ=60)

                                                                                      TGTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACT        >  SRR4302537.5700058/1‑94 (MQ=60)

                                                                                       GTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTC       <  SRR4302537.6254703/94‑1 (MQ=60)

                                                                                       GTCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTC       >  SRR4302537.741712/1‑94 (MQ=60)

                                                                                        TCGACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCG      >  SRR4302537.5586995/1‑94 (MQ=60)

                                                                                           ACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTTCAGCGACTTCGCCAGTTACTCGCGT   >  SRR4302537.485876/1‑94 (MQ=60)

                                                                                           ACACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCGCGT   >  SRR4302537.4158226/1‑94 (MQ=60)

                                                                                            CACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCGCGTA  >  SRR4302537.2581706/1‑94 (MQ=60)

AGTAAAGTCGCCATTATTAGCCGTTCCAGCGATCCGCGTGCTGATGTCGATTATCTGTTTGCGCAGGTAATCGTTCATGAGCAACGTGTCGATACCACGCCTAACTGCGGCAATATGCTGTCTGGTGTTGGGGCATTCGCCATTGAAAATGGTTTGATTGCAGCGACTTCGCCAGTTACTCGCGTA  >  NC_000913/800153‑800338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`