Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	865,458	C→T	V44I (GTC→ATC)	moeA ←	MoeA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	865,458	0	C	T	100.0%	816.8 / NA	227	V44I (GTC→ATC)	moeA	MoeA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (116/111); total (116/111)

Only 100 of 235 total aligned reads displayed.

GCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAA  >  NC_000913/865368‑865547

gCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGatat                                                                                         >  1:4755207/1‑93 (MQ=255)

gCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGatat                                                                                         >  2:2397602/1‑93 (MQ=255)

gCGGTTGCCCGGAGGCAATATCGGCTAAACGCAACGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGATACGatat                                                                                         >  2:356299/1‑93 (MQ=255)

   gTTCCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAACCCCCGGAACATCAAGCGGCGAAACGATAtcgc                                                                                      <  1:18863/93‑1 (MQ=255)

    ttGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATAtcgct                                                                                     >  2:5823707/1‑93 (MQ=255)

        ccGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGcc                                                                                 >  2:5596096/1‑93 (MQ=255)

          ggAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAg                                                                               <  1:3026965/93‑1 (MQ=255)

            aGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGaa                                                                             <  1:2464618/93‑1 (MQ=255)

            aGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGaa                                                                             >  1:5747338/1‑93 (MQ=255)

            aGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGaa                                                                             <  1:3372521/93‑1 (MQ=255)

              gCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATa                                                                           <  2:4566747/93‑1 (MQ=255)

              gCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATa                                                                           <  1:3633996/93‑1 (MQ=255)

              gCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATa                                                                           >  2:144788/1‑93 (MQ=255)

               cAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATAc                                                                          <  2:3311336/93‑1 (MQ=255)

               cAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATAc                                                                          <  2:296627/93‑1 (MQ=255)

               cAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATAc                                                                          <  2:3589778/93‑1 (MQ=255)

                aaTATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACg                                                                         >  2:1699956/1‑93 (MQ=255)

                aaTATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACg                                                                         <  1:3610280/93‑1 (MQ=255)

                aaTATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACg                                                                         <  1:1092818/93‑1 (MQ=255)

                  tatCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGAc                                                                       <  1:3912209/93‑1 (MQ=255)

                   atCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGAcc                                                                      <  1:2296010/93‑1 (MQ=255)

                   atCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGAcc                                                                      <  1:1992486/93‑1 (MQ=255)

                    tCGGCTAAACGCACCGCGGAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGGAACGATATCGCTCGCCAGAATACGACCa                                                                     >  2:1493544/1‑93 (MQ=255)

                    tCGCCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCa                                                                     <  2:3010735/93‑1 (MQ=255)

                      ggCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCaaa                                                                   >  1:1854361/1‑93 (MQ=255)

                      ggCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCaaa                                                                   >  1:4602783/1‑93 (MQ=255)

                       gCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCaaaa                                                                  >  2:10100/1‑93 (MQ=255)

                        cTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAac                                                                 <  1:5175302/93‑1 (MQ=255)

                         tAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAaca                                                                <  2:3063869/93‑1 (MQ=255)

                           aaCGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACt                                                              >  1:5279375/1‑93 (MQ=255)

                              ggaCCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTAGCCAGAATACGACCAAAACACTGTa                                                           >  1:6248637/3‑93 (MQ=255)

                               cACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTAc                                                          <  1:2218551/93‑1 (MQ=255)

                                aCCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTAcc                                                         >  1:4003338/1‑93 (MQ=255)

                                aCCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTAcc                                                         >  1:1150482/1‑93 (MQ=255)

                                 ccGCGTAGCCGTCCATTGCGGAGTTATCAACCCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCa                                                        <  2:5912410/93‑1 (MQ=255)

                                     gTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTgg                                                    >  1:5481543/1‑93 (MQ=255)

                                      tAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCACAACACTGTACCAGTGGc                                                   >  1:1027809/1‑93 (MQ=255)

                                      tAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGc                                                   >  1:2990242/1‑93 (MQ=255)

                                      tAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGc                                                   >  1:948703/1‑93 (MQ=255)

                                       aGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCa                                                  >  2:3939765/1‑93 (MQ=255)

                                       aGCCGTCCATTGCGGAGTTATCAAACCACGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCa                                                  <  1:2087819/93‑1 (MQ=255)

                                        gCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAg                                                 >  2:4471543/1‑93 (MQ=255)

                                        gCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAg                                                 >  2:1919264/1‑93 (MQ=255)

                                        gCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCCGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAg                                                 >  1:1613167/1‑93 (MQ=255)

                                          cGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCg                                               <  1:3914412/93‑1 (MQ=255)

                                            tCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGtt                                             >  2:175653/1‑93 (MQ=255)

                                            tCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGtt                                             >  1:4051585/1‑93 (MQ=255)

                                            tCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGAGtt                                             >  2:3737069/1‑93 (MQ=255)

                                             ccATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGttt                                            <  2:5081968/93‑1 (MQ=255)

                                             ccATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGttt                                            >  1:2587727/1‑93 (MQ=255)

                                              cATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTc                                           <  1:5986721/93‑1 (MQ=255)

                                               aTTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTcc                                          <  1:887591/93‑1 (MQ=255)

                                               aTTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTcc                                          <  2:5324985/93‑1 (MQ=255)

                                                   cGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTggg                                      >  2:684792/1‑93 (MQ=255)

                                                    ggAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGc                                     >  2:5238999/1‑93 (MQ=255)

                                                     gAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCg                                    >  2:2494207/1‑93 (MQ=255)

                                                      aGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCgg                                   <  1:1532602/93‑1 (MQ=255)

                                                       gTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGt                                  >  2:1782336/1‑93 (MQ=255)

                                                        ttATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTc                                 <  1:5097369/93‑1 (MQ=255)

                                                           tCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGt                              <  1:6147521/93‑1 (MQ=255)

                                                           tCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGt                              >  1:5725609/1‑93 (MQ=255)

                                                             aaaCCCCGGAACATCAAGCGGCGAAACTATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGTCGGTCAGttg                            >  2:3778999/1‑91 (MQ=255)

                                                             aaaCCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTgg                            >  2:5692310/1‑93 (MQ=255)

                                                             aaaCCCCGGAACAGCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTgg                            <  2:4440332/93‑1 (MQ=255)

                                                              aaCCCCGGAACATCAGGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCGGCGTTTCCTGGGCGGTCAGTggg                           <  1:4517589/93‑1 (MQ=255)

                                                              aaCCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTggg                           >  1:2816488/1‑93 (MQ=255)

                                                                ccccGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTggggg                         >  2:4837089/1‑92 (MQ=255)

                                                                 cccGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATATGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTg                        >  1:4551505/1‑93 (MQ=255)

                                                                 cccGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTg                        <  2:3811161/93‑1 (MQ=255)

                                                                 cccGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTg                        >  1:5592006/1‑93 (MQ=255)

                                                                  ccGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGa                       <  1:3821705/93‑1 (MQ=255)

                                                                   cGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGAc                      <  2:2778069/93‑1 (MQ=255)

                                                                    ggAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGAcg                     >  2:6177167/1‑93 (MQ=255)

                                                                     gAACGTCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGAcgc                    >  2:2742070/1‑93 (MQ=255)

                                                                     gAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGAcgg                    >  2:1996614/1‑92 (MQ=255)

                                                                       aCATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCga                  >  2:743516/1‑93 (MQ=255)

                                                                       aCATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCga                  <  2:4201034/93‑1 (MQ=255)

                                                                         aTCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCgaga                >  1:4370183/1‑93 (MQ=255)

                                                                         aTCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACAAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCgaga                >  1:4265782/1‑93 (MQ=255)

                                                                           cAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGaaa              <  1:1640594/93‑1 (MQ=255)

                                                                           cAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACCGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGaaa              <  2:5534328/93‑1 (MQ=255)

                                                                            aaGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAg             <  2:5119871/93‑1 (MQ=255)

                                                                             aGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGc            >  1:5416005/1‑93 (MQ=255)

                                                                              gcggcgAAACGATATCGCTCGCCAGAATACGACCAAACCACTGTACCAGTGGCAGAGATTCCTGTGCGGTCAGTGGGGCGACGCGGGTAAGCa           >  2:6251857/1‑93 (MQ=255)

                                                                              gcggcgAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCa           >  1:6437264/1‑93 (MQ=255)

                                                                               cggcgAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCAt          <  1:4119726/93‑1 (MQ=255)

                                                                                ggcgAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCAtc         >  2:4680439/1‑93 (MQ=255)

                                                                                ggcgAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCAtc         >  1:2699043/1‑93 (MQ=255)

                                                                                 gcgAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCAtct        >  2:2806966/1‑93 (MQ=255)

                                                                                  cgAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCAtctc       >  2:4321661/1‑93 (MQ=255)

                                                                                  cgAAAAGATAACACTCGCCAGAATACGACAAAAACACTGTACCAGTGGCAGCGTAACCTGGGCGGTCAGTGGGGTGACGCTAGAAAGCAtctc       <  2:64024/93‑1 (MQ=255)

                                                                                   gAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCa      <  2:2527358/93‑1 (MQ=255)

                                                                                   gAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCa      <  1:3685108/93‑1 (MQ=255)

                                                                                    aaaCGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCAt     <  2:5013172/93‑1 (MQ=255)

                                                                                      gcGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTa   >  1:6094828/2‑93 (MQ=255)

                                                                                      aCGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTa   >  2:4766012/1‑93 (MQ=255)

                                                                                      aCGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTa   <  1:3257066/93‑1 (MQ=255)

                                                                                       cGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTaa  <  2:1386451/93‑1 (MQ=255)

                                                                                       cGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTaa  <  2:1229833/93‑1 (MQ=255)

                                                                                       cGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTaa  >  2:752275/1‑93 (MQ=255)

GCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAA  >  NC_000913/865368‑865547

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAGCGC  >  NC_000913/865365‑865551

GCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGAT                                                                                               <  SRR4302537.4159909/94‑1 (MQ=60)

GCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGAT                                                                                               >  SRR4302537.5990559/1‑94 (MQ=60)

GCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGAT                                                                                               >  SRR4302537.80854/1‑94 (MQ=60)

  AGCGGTTGCCCGGAGGCAATATCGGTTAAACGCACCGCGTAGCCGTCCTTTGCGGAGTTATAAAACCCCGGAACATCAAGCGGCGAAACGATAT                                                                                             >  SRR4302537.4172307/1‑94 (MQ=60)

  AGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATAT                                                                                             <  SRR4302537.5752331/94‑1 (MQ=60)

  AGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATAT                                                                                             >  SRR4302537.4788055/1‑94 (MQ=60)

    CGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCG                                                                                           <  SRR4302537.4132202/94‑1 (MQ=60)

    CGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCG                                                                                           <  SRR4302537.1116796/94‑1 (MQ=60)

     GGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGC                                                                                          >  SRR4302537.393963/1‑94 (MQ=60)

      GTTCCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAACCCCCGGAACATCAAGCGGCGAAACGATATCGCT                                                                                         <  SRR4302537.19010/94‑1 (MQ=60)

        TGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCG                                                                                       <  SRR4302537.4038496/94‑1 (MQ=60)

          CCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCC                                                                                     >  SRR4302537.143705/1‑94 (MQ=60)

            CGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAG                                                                                   <  SRR4302537.387270/94‑1 (MQ=60)

             GGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGA                                                                                  <  SRR4302537.3048069/94‑1 (MQ=60)

              GAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAA                                                                                 >  SRR4302537.5786694/1‑94 (MQ=60)

               AGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGTAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAAT                                                                                <  SRR4302537.2707485/94‑1 (MQ=60)

               AGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAAT                                                                                <  SRR4302537.2481945/94‑1 (MQ=60)

               AGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAAT                                                                                <  SRR4302537.3396420/94‑1 (MQ=60)

                GGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATA                                                                               >  SRR4302537.5959991/1‑94 (MQ=60)

                 GCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATAC                                                                              <  SRR4302537.3659596/94‑1 (MQ=60)

                 GCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGAAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATAC                                                                              >  SRR4302537.898041/1‑94 (MQ=60)

                  CAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACG                                                                             <  SRR4302537.6321057/94‑1 (MQ=60)

                   AATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGA                                                                            <  SRR4302537.3635729/94‑1 (MQ=60)

                   AATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGA                                                                            <  SRR4302537.1100364/94‑1 (MQ=60)

                   AATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAAAGATATCGCTCGCCAGAATACGA                                                                            >  SRR4302537.784743/1‑94 (MQ=60)

                     TATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACC                                                                          <  SRR4302537.3939556/94‑1 (MQ=60)

                     TATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACC                                                                          <  SRR4302537.4960501/94‑1 (MQ=60)

                     TATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACC                                                                          >  SRR4302537.2313537/1‑94 (MQ=60)

                     TATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACC                                                                          <  SRR4302537.1633474/94‑1 (MQ=60)

                      ATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCA                                                                         <  SRR4302537.2312216/94‑1 (MQ=60)

                      ATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCA                                                                         <  SRR4302537.4315261/94‑1 (MQ=60)

                      ATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCA                                                                         <  SRR4302537.2006342/94‑1 (MQ=60)

                      ATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCA                                                                         >  SRR4302537.5669241/1‑94 (MQ=60)

                        CGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAA                                                                       >  SRR4302537.4634641/1‑94 (MQ=60)

                        CGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAA                                                                       >  SRR4302537.1054636/1‑94 (MQ=60)

                        CGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAA                                                                       >  SRR4302537.1867256/1‑94 (MQ=60)

                         GGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAA                                                                      <  SRR4302537.3638050/94‑1 (MQ=60)

                           CTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACA                                                                    <  SRR4302537.5210925/94‑1 (MQ=60)

                             AAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACT                                                                  >  SRR4302537.5315693/1‑94 (MQ=60)

                              AACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTG                                                                 >  SRR4302537.5774383/1‑94 (MQ=60)

                                CGGACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTAGCCAGAATACGACCAAAACACTGTA                                                               >  SRR4302537.6291567/1‑94 (MQ=60)

                                 GCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTAC                                                              <  SRR4302537.2396658/94‑1 (MQ=60)

                                  CACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACC                                                             >  SRR4302537.3958608/1‑94 (MQ=60)

                                  CACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACC                                                             >  SRR4302537.4031360/1‑94 (MQ=60)

                                  CACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACC                                                             <  SRR4302537.2234188/94‑1 (MQ=60)

                                  CACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACC                                                             >  SRR4302537.1158479/1‑94 (MQ=60)

                                    CCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAG                                                           <  SRR4302537.4567379/94‑1 (MQ=60)

                                       CGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGG                                                        >  SRR4302537.5518968/1‑94 (MQ=60)

                                       CGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGG                                                        >  SRR4302537.4220589/1‑94 (MQ=60)

                                        GTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCACAACACTGTACCAGTGGC                                                       >  SRR4302537.1034885/1‑94 (MQ=60)

                                        GTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGC                                                       >  SRR4302537.955266/1‑94 (MQ=60)

                                        GTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGC                                                       >  SRR4302537.3011121/1‑94 (MQ=60)

                                        GTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGC                                                       >  SRR4302537.3040471/1‑94 (MQ=60)

                                          AGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAG                                                     >  SRR4302537.1885724/1‑94 (MQ=60)

                                          AGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCCGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAG                                                     >  SRR4302537.1624442/1‑94 (MQ=60)

                                          AGCCGTCCATTGCGGAGTTATCAAACCACGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAG                                                     <  SRR4302537.2102546/94‑1 (MQ=60)

                                            CCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCG                                                   <  SRR4302537.3411494/94‑1 (MQ=60)

                                             CGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGT                                                  <  SRR4302537.3941776/94‑1 (MQ=60)

                                              GTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTT                                                 >  SRR4302537.2738639/1‑94 (MQ=60)

                                              GTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTT                                                 >  SRR4302537.4657967/1‑94 (MQ=60)

                                              GTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTT                                                 >  SRR4302537.4079917/1‑94 (MQ=60)

                                              GTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTT                                                 >  SRR4302537.2722560/1‑94 (MQ=60)

                                              GTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTT                                                 <  SRR4302537.3948245/94‑1 (MQ=60)

                                               TCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTT                                                >  SRR4302537.3342215/1‑94 (MQ=60)

                                               TCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTT                                                >  SRR4302537.2605834/1‑94 (MQ=60)

                                                 CATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCC                                              <  SRR4302537.6027806/94‑1 (MQ=60)

                                                 CATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCC                                              <  SRR4302537.5308772/94‑1 (MQ=60)

                                                  ATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCT                                             <  SRR4302537.1338165/94‑1 (MQ=60)

                                                  ATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCT                                             <  SRR4302537.893697/94‑1 (MQ=60)

                                                   TTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTG                                            <  SRR4302537.2961812/94‑1 (MQ=60)

                                                    TGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGG                                           <  SRR4302537.3071841/94‑1 (MQ=60)

                                                         AGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGT                                      >  SRR4302537.3578494/1‑94 (MQ=60)

                                                         AGTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGT                                      <  SRR4302537.1543313/94‑1 (MQ=60)

                                                          GTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTC                                     <  SRR4302537.5450908/94‑1 (MQ=60)

                                                          GTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTC                                     >  SRR4302537.1672049/1‑94 (MQ=60)

                                                          GTTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGGTTCCTCGGCGGTG                                     >  SRR4302537.6265016/1‑94 (MQ=60)

                                                           TTATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCA                                    <  SRR4302537.5132473/94‑1 (MQ=60)

                                                            TATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAG                                   >  SRR4302537.3086939/1‑94 (MQ=60)

                                                             ATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGT                                  >  SRR4302537.2077327/1‑94 (MQ=60)

                                                             ATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGT                                  >  SRR4302537.5764803/1‑94 (MQ=60)

                                                             ATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGT                                  <  SRR4302537.6059098/94‑1 (MQ=60)

                                                             ATCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGG                                  >  SRR4302537.3662247/1‑94 (MQ=60)

                                                              TCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTTGCAGCGTTTCCTGGGCGGTCAGTG                                 >  SRR4302537.6271194/1‑94 (MQ=60)

                                                              TCAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTG                                 <  SRR4302537.6189805/94‑1 (MQ=60)

                                                               CAAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGG                                >  SRR4302537.1599277/1‑94 (MQ=60)

                                                                AAACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGG                               >  SRR4302537.2836181/1‑94 (MQ=60)

                                                                 AACCCCGGAACATCAGGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCGGCGTTTCCTGGGCGGTCAGTGGGG                              <  SRR4302537.4548841/94‑1 (MQ=60)

                                                                  ACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGT                             <  SRR4302537.1664586/94‑1 (MQ=60)

                                                                  ACCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGT                             <  SRR4302537.2595476/94‑1 (MQ=60)

                                                                   CCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATATGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTG                            >  SRR4302537.4583000/1‑94 (MQ=60)

                                                                   CCCCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTG                            >  SRR4302537.5630238/1‑94 (MQ=60)

                                                                     CCGGAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGAC                          <  SRR4302537.3848500/94‑1 (MQ=60)

                                                                       GGAGCATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGC                        >  SRR4302537.6160019/1‑94 (MQ=60)

                                                                        GAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCG                       <  SRR4302537.6281747/94‑1 (MQ=60)

                                                                        GAACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCG                       >  SRR4302537.558242/1‑94 (MQ=60)

                                                                          ACATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAG                     >  SRR4302537.2014044/1‑94 (MQ=60)

                                                                           CATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGA                    >  SRR4302537.4400384/1‑94 (MQ=60)

                                                                           CATCAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACAAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGA                    >  SRR4302537.4295422/1‑94 (MQ=60)

                                                                              CAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAG                 >  SRR4302537.3725224/1‑94 (MQ=60)

                                                                              CAAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAG                 <  SRR4302537.1652088/94‑1 (MQ=60)

                                                                               AAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGC                >  SRR4302537.5452932/1‑94 (MQ=60)

                                                                               AAGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGC                >  SRR4302537.4600446/1‑94 (MQ=60)

                                                                                AGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCA               >  SRR4302537.2256816/1‑94 (MQ=60)

                                                                                AGCGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCA               >  SRR4302537.6480969/1‑94 (MQ=60)

                                                                                  CGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATC             <  SRR4302537.4148492/94‑1 (MQ=60)

                                                                                  CGGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATC             >  SRR4302537.2717899/1‑94 (MQ=60)

                                                                                   GGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCT            >  SRR4302537.4897463/1‑94 (MQ=60)

                                                                                   GGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCT            <  SRR4302537.4577286/94‑1 (MQ=60)

                                                                                   GGCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCT            >  SRR4302537.5399151/1‑94 (MQ=60)

                                                                                    GCGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTC           <  SRR4302537.4228586/94‑1 (MQ=60)

                                                                                     CGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCA          <  SRR4302537.1927260/94‑1 (MQ=60)

                                                                                     CGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCA          >  SRR4302537.4480746/1‑94 (MQ=60)

                                                                                     CGAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCA          >  SRR4302537.5917027/1‑94 (MQ=60)

                                                                                      GAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCAT         <  SRR4302537.2169112/94‑1 (MQ=60)

                                                                                      GAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCAT         >  SRR4302537.5574286/1‑94 (MQ=60)

                                                                                      GAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCAT         <  SRR4302537.3711028/94‑1 (MQ=60)

                                                                                      GAAACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCAT         >  SRR4302537.945103/1‑94 (MQ=60)

                                                                                        AGCGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTA       >  SRR4302537.6136708/1‑94 (MQ=60)

                                                                                        AACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTA       <  SRR4302537.5155120/94‑1 (MQ=60)

                                                                                        AACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTA       >  SRR4302537.5511904/1‑94 (MQ=60)

                                                                                         ACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAA      >  SRR4302537.3835950/1‑94 (MQ=60)

                                                                                         ACGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAA      <  SRR4302537.3280032/94‑1 (MQ=60)

                                                                                          CGATATCGCTCGCCAGAATACTACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAG     >  SRR4302537.3804277/1‑94 (MQ=60)

                                                                                          CGATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAG     >  SRR4302537.1202486/1‑94 (MQ=60)

                                                                                           GATATCGCTCGCCAGAATACGAGCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAGC    >  SRR4302537.6462522/1‑94 (MQ=60)

                                                                                            ATATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAGCG   <  SRR4302537.4287284/94‑1 (MQ=60)

                                                                                             TATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAGCGC  <  SRR4302537.5312553/94‑1 (MQ=60)

GCAGCGGTTGCCCGGAGGCAATATCGGCTAAACGCACCGCGTAGCCGTCCATTGCGGAGTTATCAAACCCCGGAACATCAAGCGGCGAAACGACATCGCTCGCCAGAATACGACCAAAACACTGTACCAGTGGCAGCGTTTCCTGGGCGGTCAGTGGGGTGACGCGAGAAAGCATCTCATTAAGCGC  >  NC_000913/865365‑865551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`