Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	908,998	A→G	R425R (CGT→CGC)	poxB ←	pyruvate oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	908,998	0	A	G	100.0%	720.0 / NA	209	R425R (CGT→CGC)	poxB	pyruvate oxidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (133/76); total (133/76)

Only 100 of 217 total aligned reads displayed.

AATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGACGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTT  >  NC_000913/908908‑909087

aaTTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCg                                                                                         >  1:3560747/1‑93 (MQ=255)

  ttttCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGtt                                                                                       <  2:3439323/93‑1 (MQ=255)

   tttCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTc                                                                                      <  1:4905412/93‑1 (MQ=255)

   tttCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGACATCGCCGCACATGGCGACCACCTGGCGTTc                                                                                      <  1:6146586/93‑1 (MQ=255)

    ttCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCt                                                                                     >  2:4859717/1‑93 (MQ=255)

     tCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTg                                                                                    <  2:5404134/93‑1 (MQ=255)

     tCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTg                                                                                    >  1:3447511/1‑93 (MQ=255)

      cACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTgg                                                                                   <  1:1285679/93‑1 (MQ=255)

      cACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTgg                                                                                   >  1:851132/1‑93 (MQ=255)

      cACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCAACTGGCGTTCTgg                                                                                   >  1:2296285/1‑93 (MQ=255)

       aCTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGc                                                                                  >  1:5877479/1‑93 (MQ=255)

       aCTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGc                                                                                  >  1:5531403/1‑93 (MQ=255)

       aCTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGc                                                                                  >  1:4602338/1‑93 (MQ=255)

         tGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGctc                                                                                >  2:3506687/1‑93 (MQ=255)

         tGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGctc                                                                                >  2:2023675/1‑93 (MQ=255)

         tGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGctc                                                                                >  1:3097020/1‑93 (MQ=255)

          ggCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGctct                                                                               <  2:2460234/93‑1 (MQ=255)

          ggCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGctct                                                                               >  2:5821691/1‑93 (MQ=255)

            cAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGt                                                                             <  2:2333598/93‑1 (MQ=255)

            cAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGt                                                                             <  2:3623185/93‑1 (MQ=255)

             aGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTc                                                                            <  2:5462227/93‑1 (MQ=255)

              gTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCg                                                                           >  2:3776575/1‑93 (MQ=255)

               tttCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGc                                                                          >  2:3880070/1‑93 (MQ=255)

               tttCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGc                                                                          >  1:4285236/1‑93 (MQ=255)

                   aTCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTgc                                                                      <  1:3394176/93‑1 (MQ=255)

                      tGCACTACTGAGTGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTTGCGCGCGCa                                                                   >  2:4355063/1‑93 (MQ=255)

                      tGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCa                                                                   >  1:6300878/1‑93 (MQ=255)

                      tGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCa                                                                   >  1:2240215/1‑93 (MQ=255)

                       gCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCAc                                                                  >  1:4168486/1‑93 (MQ=255)

                       gCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCAc                                                                  >  1:3829536/1‑93 (MQ=255)

                       gCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCAc                                                                  <  1:4805838/93‑1 (MQ=255)

                         actactGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCAccc                                                                >  1:3949588/1‑93 (MQ=255)

                          ctactGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCa                                                               >  2:3099250/1‑93 (MQ=255)

                               gagaGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGcc                                                          >  1:58038/1‑93 (MQ=255)

                               gagaGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGcc                                                          >  2:4150007/1‑93 (MQ=255)

                               gagaGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGcc                                                          >  1:2735319/1‑93 (MQ=255)

                               gagaGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGcc                                                          >  1:2218045/1‑93 (MQ=255)

                                 gagGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTg                                                        >  2:4595752/1‑93 (MQ=255)

                                  agGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGc                                                       <  1:2108924/93‑1 (MQ=255)

                                   ggAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCg                                                      <  2:3497507/93‑1 (MQ=255)

                                    gAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCgg                                                     <  1:387897/93‑1 (MQ=255)

                                     aaaTCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGc                                                    <  1:419264/93‑1 (MQ=255)

                                     aaaTCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGc                                                    >  1:2194474/1‑93 (MQ=255)

                                        acGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTGTGTCTCCTGCGCACCCAGCGCCTGCGGCATg                                                 <  2:4615338/92‑1 (MQ=255)

                                          gCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGc                                               >  1:2450751/1‑93 (MQ=255)

                                          gCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGc                                               >  1:5812896/1‑93 (MQ=255)

                                           cccATCAACATGCTAAATCCGCCATCGCCGCACATGGCGACCACCTGGCGTTCGGGCTCTGTCGCCTGCGCCCCCAGCGCCTGCGGCATGGCg                                              <  2:2384011/93‑1 (MQ=255)

                                            ccATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGt                                             <  2:1406205/93‑1 (MQ=255)

                                             cATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGtt                                            >  2:326669/1‑93 (MQ=255)

                                              ataaaCATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTa                                           >  1:1503191/4‑93 (MQ=255)

                                               tCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAg                                          >  2:4303480/1‑93 (MQ=255)

                                                cAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGc                                         <  1:2022198/93‑1 (MQ=255)

                                                 aaCATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGcc                                        >  1:1103746/1‑93 (MQ=255)

                                                 aaCATGCTAAAACCGCCATCGCCGCACATGGCGACCAACTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGGGTTAGca                                        >  2:2124966/1‑92 (MQ=255)

                                                  aCATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCa                                       >  1:4643581/1‑93 (MQ=255)

                                                  aCATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCa                                       <  2:1859569/93‑1 (MQ=255)

                                                  aCATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCa                                       >  1:835358/1‑93 (MQ=255)

                                                    aTGCTAAAACCGCTATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATc                                     <  1:1794159/93‑1 (MQ=255)

                                                     tGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCg                                    >  1:5146785/1‑93 (MQ=255)

                                                       cTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGaa                                  >  1:6058873/1‑93 (MQ=255)

                                                        tAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAAc                                 >  2:6352534/1‑93 (MQ=255)

                                                        tAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAAc                                 >  1:1567849/1‑93 (MQ=255)

                                                        tAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAAc                                 >  2:3534061/1‑93 (MQ=255)

                                                         aaaaCCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAAcc                                >  1:2872392/1‑93 (MQ=255)

                                                         aaaaCCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAAcc                                <  2:3726264/93‑1 (MQ=255)

                                                          aaaCCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCg                               <  1:4977975/93‑1 (MQ=255)

                                                           acccGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGt                              <  1:23099/91‑1 (MQ=255)

                                                            aCCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTg                             <  1:3186932/93‑1 (MQ=255)

                                                              cGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGt                           <  2:4519067/93‑1 (MQ=255)

                                                              cGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGt                           <  2:4106543/93‑1 (MQ=255)

                                                              cGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGt                           >  2:522735/1‑93 (MQ=255)

                                                               gCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGtt                          <  2:2949610/93‑1 (MQ=255)

                                                               gCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGtt                          >  2:399855/1‑93 (MQ=255)

                                                                ccATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTa                         <  2:693087/93‑1 (MQ=255)

                                                                ccATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTa                         >  1:6374033/1‑93 (MQ=255)

                                                                 cATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTaa                        >  2:3043151/1‑93 (MQ=255)

                                                                 cATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTaa                        <  2:1624465/93‑1 (MQ=255)

                                                                 cATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTaa                        >  1:1637589/1‑93 (MQ=255)

                                                                  aTCGCCGCACATGGCGACTACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGCACCGTGGTTaaa                       >  2:2711337/1‑93 (MQ=255)

                                                                  aTCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTaaa                       <  1:5926217/93‑1 (MQ=255)

                                                                  aTCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTaaa                       >  2:1451285/1‑93 (MQ=255)

                                                                     gccgcACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGa                    >  1:5422919/1‑93 (MQ=255)

                                                                     gccgcACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGa                    >  2:4558215/1‑93 (MQ=255)

                                                                      ccgcACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGaa                   >  2:3858434/1‑93 (MQ=255)

                                                                       cgcACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAAc                  <  1:1185597/93‑1 (MQ=255)

                                                                        gcACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAAcc                 >  1:4382866/1‑93 (MQ=255)

                                                                           caTGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTaa              >  1:5177854/1‑93 (MQ=255)

                                                                               gCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAgg          <  2:3276986/93‑1 (MQ=255)

                                                                                cGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGc         <  1:4647714/93‑1 (MQ=255)

                                                                                  ccccccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGa       <  1:293546/89‑1 (MQ=255)

                                                                                  accaccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCCTCGAACCGTGGTTAAACGAACATAACAGGCGa       >  1:6354360/1‑93 (MQ=255)

                                                                                  accaccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAGCCGTGGTTAAACGAACCTAACAGGCGa       <  2:3182513/93‑1 (MQ=255)

                                                                                  accaccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGa       <  2:6172254/93‑1 (MQ=255)

                                                                                  accaccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACAAACCTAACAGGCGa       <  2:812002/93‑1 (MQ=255)

                                                                                     accTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGc    >  2:2478911/1‑93 (MQ=255)

                                                                                     accTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGc    >  2:5027577/1‑93 (MQ=255)

                                                                                     accTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGCGGTTAAACGAACCTAACAGGCGACGc    >  1:5251631/1‑93 (MQ=255)

                                                                                      ccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCGTGCTGCATGGCGTTAGCCATCGACCCGTGGTTAAACGATCCTAACAGGCGACGCt   <  2:5528877/93‑1 (MQ=255)

                                                                                      ccTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCt   >  2:2545732/1‑93 (MQ=255)

                                                                                       cTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCtt  <  1:3326415/93‑1 (MQ=255)

AATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGACGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTT  >  NC_000913/908908‑909087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GACAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGACGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTGCC  >  NC_000913/908905‑909090

GACAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGG                                                                                              >  SRR4302537.3449509/1‑94 (MQ=60)

GACAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGG                                                                                              >  SRR4302537.5603341/1‑94 (MQ=60)

  CAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCG                                                                                            >  SRR4302537.2341893/1‑94 (MQ=60)

  CAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCG                                                                                            <  SRR4302537.6441788/94‑1 (MQ=60)

  CAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCG                                                                                            >  SRR4302537.3585867/1‑94 (MQ=60)

      TTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCT                                                                                        <  SRR4302537.4939273/94‑1 (MQ=60)

      TTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGACATCGCCGCACATGGCGACCACCTGGCGTTCT                                                                                        <  SRR4302537.6188862/94‑1 (MQ=60)

       TTCACTGGCAGTTTCATCTGCACTACTGAGAGTAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTG                                                                                       <  SRR4302537.3198146/94‑1 (MQ=60)

       TTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTG                                                                                       >  SRR4302537.3471898/1‑94 (MQ=60)

        TCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGG                                                                                      >  SRR4302537.5639235/1‑94 (MQ=60)

        TCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGG                                                                                      >  SRR4302537.856966/1‑94 (MQ=60)

        TCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCAACTGGCGTTCTGG                                                                                      >  SRR4302537.2312493/1‑94 (MQ=60)

         CACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGC                                                                                     >  SRR4302537.5917804/1‑94 (MQ=60)

         CACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGC                                                                                     >  SRR4302537.5569164/1‑94 (MQ=60)

         CACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGC                                                                                     >  SRR4302537.6253863/1‑94 (MQ=60)

         CACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGC                                                                                     >  SRR4302537.4634193/1‑94 (MQ=60)

         CACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGC                                                                                     <  SRR4302537.1294622/94‑1 (MQ=60)

          ACTGGCAGTTTCATCTGCACTACTTAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCT                                                                                    >  SRR4302537.223061/1‑94 (MQ=60)

          ACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCT                                                                                    <  SRR4302537.2759055/94‑1 (MQ=60)

          ACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCT                                                                                    <  SRR4302537.2919079/94‑1 (MQ=60)

           CTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTC                                                                                   >  SRR4302537.3118634/1‑94 (MQ=60)

               CAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTC                                                                               >  SRR4302537.322391/1‑94 (MQ=60)

                 GTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGC                                                                             >  SRR4302537.4315023/1‑94 (MQ=60)

                 GTTTCATCTGCACTACCGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGC                                                                             >  SRR4302537.3466256/1‑94 (MQ=60)

                    TCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTG                                                                          >  SRR4302537.4019567/1‑94 (MQ=60)

                      ATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCG                                                                        <  SRR4302537.3418217/94‑1 (MQ=60)

                      ATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCG                                                                        <  SRR4302537.6409854/94‑1 (MQ=60)

                       TCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGC                                                                       >  SRR4302537.2271737/1‑94 (MQ=60)

                        CTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCA                                                                      >  SRR4302537.2256010/1‑94 (MQ=60)

                        CTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCA                                                                      >  SRR4302537.6344029/1‑94 (MQ=60)

                        CTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCA                                                                      >  SRR4302537.855460/1‑94 (MQ=60)

                         TGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCAC                                                                     >  SRR4302537.3856382/1‑94 (MQ=60)

                         TGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCAC                                                                     >  SRR4302537.4197603/1‑94 (MQ=60)

                          GCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACC                                                                    <  SRR4302537.4838984/94‑1 (MQ=60)

                           CACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCC                                                                   >  SRR4302537.3977211/1‑94 (MQ=60)

                           CACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCC                                                                   >  SRR4302537.3755695/1‑94 (MQ=60)

                             CTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAG                                                                 >  SRR4302537.3938796/1‑94 (MQ=60)

                              TACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGC                                                                >  SRR4302537.6032094/1‑94 (MQ=60)

                              TACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGC                                                                >  SRR4302537.3889707/1‑94 (MQ=60)

                              TACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGC                                                                <  SRR4302537.2133304/94‑1 (MQ=60)

                               ACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCG                                                               <  SRR4302537.476654/94‑1 (MQ=60)

                                 TGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCC                                                             >  SRR4302537.2754406/1‑94 (MQ=60)

                                 TGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCC                                                             >  SRR4302537.58464/1‑94 (MQ=60)

                                 TGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCC                                                             >  SRR4302537.2233681/1‑94 (MQ=60)

                                   AGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTG                                                           >  SRR4302537.4221186/1‑94 (MQ=60)

                                   AGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTCGCTCTGTCGCCTGCGCACCCAGCGCCTG                                                           >  SRR4302537.431370/1‑94 (MQ=60)

                                     AGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCG                                                         >  SRR4302537.5091235/1‑94 (MQ=60)

                                     AGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCG                                                         <  SRR4302537.2123791/94‑1 (MQ=60)

                                      GGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGG                                                        >  SRR4302537.1263695/1‑94 (MQ=60)

                                       GAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGC                                                       >  SRR4302537.2209934/1‑94 (MQ=60)

                                       GAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGC                                                       >  SRR4302537.3828265/1‑94 (MQ=60)

                                       GAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGC                                                       <  SRR4302537.390578/94‑1 (MQ=60)

                                        AAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCA                                                      >  SRR4302537.5522938/1‑94 (MQ=60)

                                        AAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCA                                                      >  SRR4302537.2089680/1‑94 (MQ=60)

                                        AAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCA                                                      <  SRR4302537.422174/94‑1 (MQ=60)

                                         AATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCAT                                                     <  SRR4302537.1926730/94‑1 (MQ=60)

                                          ATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATG                                                    <  SRR4302537.4676964/94‑1 (MQ=60)

                                            CGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGC                                                  >  SRR4302537.5205802/1‑94 (MQ=60)

                                            CGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGC                                                  >  SRR4302537.2467993/1‑94 (MQ=60)

                                            CGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGC                                                  <  SRR4302537.4511954/94‑1 (MQ=60)

                                            CGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGC                                                  >  SRR4302537.5852742/1‑94 (MQ=60)

                                            CGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGC                                                  <  SRR4302537.1143240/94‑1 (MQ=60)

                                               CCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTT                                               >  SRR4302537.5928658/1‑94 (MQ=60)

                                               CCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTT                                               >  SRR4302537.4408190/1‑94 (MQ=60)

                                                CATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTA                                              >  SRR4302537.2236495/1‑94 (MQ=60)

                                                CATAAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTA                                              >  SRR4302537.1513683/1‑94 (MQ=60)

                                                   CAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCC                                           <  SRR4302537.2036307/94‑1 (MQ=60)

                                                   CAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCC                                           >  SRR4302537.1111367/1‑94 (MQ=60)

                                                    AACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCA                                          >  SRR4302537.841073/1‑94 (MQ=60)

                                                    AACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCA                                          >  SRR4302537.4675694/1‑94 (MQ=60)

                                                       ATGCTAAAACCGCTATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCG                                       <  SRR4302537.1806678/94‑1 (MQ=60)

                                                       ATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCG                                       >  SRR4302537.5182251/1‑94 (MQ=60)

                                                         GCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAA                                     >  SRR4302537.6100497/1‑94 (MQ=60)

                                                         GCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAA                                     <  SRR4302537.3390537/94‑1 (MQ=60)

                                                         GCTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAA                                     >  SRR4302537.4380868/1‑94 (MQ=60)

                                                          CTAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAAC                                    >  SRR4302537.1578790/1‑94 (MQ=60)

                                                           TAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACC                                   <  SRR4302537.5394050/94‑1 (MQ=60)

                                                           TAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACC                                   >  SRR4302537.2892550/1‑94 (MQ=60)

                                                           TAAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACC                                   >  SRR4302537.4895765/1‑94 (MQ=60)

                                                            AAAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCG                                  >  SRR4302537.1515486/1‑94 (MQ=60)

                                                             AAACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGT                                 <  SRR4302537.5012287/94‑1 (MQ=60)

                                                              ACCCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTG                                <  SRR4302537.23277/94‑1 (MQ=60)

                                                              AACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTG                                >  SRR4302537.2313231/1‑94 (MQ=60)

                                                               ACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGG                               <  SRR4302537.3209352/94‑1 (MQ=60)

                                                               ACCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGG                               <  SRR4302537.3483863/94‑1 (MQ=60)

                                                                CCGCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGT                              <  SRR4302537.1714602/94‑1 (MQ=60)

                                                                  GCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTA                            >  SRR4302537.6189575/1‑94 (MQ=60)

                                                                  GCCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTA                            >  SRR4302537.6417505/1‑94 (MQ=60)

                                                                   CCATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAA                           >  SRR4302537.1649063/1‑94 (MQ=60)

                                                                    CATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAA                          >  SRR4302537.3059712/1‑94 (MQ=60)

                                                                     ATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAAC                         >  SRR4302537.2289710/1‑94 (MQ=60)

                                                                     ATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAAC                         >  SRR4302537.6364155/1‑94 (MQ=60)

                                                                     ATCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAAC                         <  SRR4302537.5966887/94‑1 (MQ=60)

                                                                      TCGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACG                        >  SRR4302537.5859812/1‑94 (MQ=60)

                                                                       CGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGA                       >  SRR4302537.5459885/1‑94 (MQ=60)

                                                                       CGCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGA                       >  SRR4302537.1306608/1‑94 (MQ=60)

                                                                        GCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAA                      <  SRR4302537.5759205/94‑1 (MQ=60)

                                                                        GCCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAA                      >  SRR4302537.3084311/1‑94 (MQ=60)

                                                                         CCGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAAC                     >  SRR4302537.1794629/1‑94 (MQ=60)

                                                                          CGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACC                    <  SRR4302537.1193837/94‑1 (MQ=60)

                                                                          CGCACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACC                    >  SRR4302537.4413113/1‑94 (MQ=60)

                                                                            CACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTA                  >  SRR4302537.651596/1‑94 (MQ=60)

                                                                             ACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAA                 <  SRR4302537.1587932/94‑1 (MQ=60)

                                                                             ACATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAA                 >  SRR4302537.5213488/1‑94 (MQ=60)

                                                                              CATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAAC                >  SRR4302537.5259279/1‑94 (MQ=60)

                                                                              CATGGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAAC                >  SRR4302537.5003981/1‑94 (MQ=60)

                                                                                 GGCGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGG             <  SRR4302537.2564389/94‑1 (MQ=60)

                                                                                   CGACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCG           <  SRR4302537.4679846/94‑1 (MQ=60)

                                                                                    GACCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCCTCGAACCGTGGTTAAACGAACATAACAGGCGA          >  SRR4302537.6397733/1‑94 (MQ=60)

                                                                                      CCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACG        <  SRR4302537.5852041/94‑1 (MQ=60)

                                                                                      CCACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACG        >  SRR4302537.4649255/1‑94 (MQ=60)

                                                                                       CACCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGCGGTTAAACGAACCTAACAGGCGACGC       >  SRR4302537.5287769/1‑94 (MQ=60)

                                                                                         CCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTT     >  SRR4302537.6107779/1‑94 (MQ=60)

                                                                                         CCTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTT     <  SRR4302537.5011363/94‑1 (MQ=60)

                                                                                          CTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTG    <  SRR4302537.3349953/94‑1 (MQ=60)

                                                                                          CTGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTG    >  SRR4302537.5715349/1‑94 (MQ=60)

                                                                                           TGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTGC   <  SRR4302537.4481722/94‑1 (MQ=60)

                                                                                           TGGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTGC   <  SRR4302537.2287410/94‑1 (MQ=60)

                                                                                            GGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCTATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTGCC  >  SRR4302537.5799664/1‑94 (MQ=60)

                                                                                            GGCGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTGCC  <  SRR4302537.2032055/94‑1 (MQ=60)

GACAATTTTCACTGGCAGTTTCATCTGCACTACTGAGAGGAAATCGCCCATCAACATGCTAAAACCGCCATCGCCGCACATGGCGACCACCTGACGTTCTGGCTCTGTCGCCTGCGCACCCAGCGCCTGCGGCATGGCGTTAGCCATCGAACCGTGGTTAAACGAACCTAACAGGCGACGCTTGCC  >  NC_000913/908905‑909090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`