Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	936,505	T→C	intergenic (+69/‑87)	ftsK → / → lolA	cell division protein/periplasmic protein effects translocation of lipoproteins from inner membrane to outer

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	936,505	0	T	C	96.1%	751.3 / 11.1	231	intergenic (+69/‑87)	ftsK/lolA	cell division protein/periplasmic protein effects translocation of lipoproteins from inner membrane to outer
Reads supporting (aligned to +/- strand): ref base T (6/3); new base C (106/115); total (113/118)
Fisher's exact test for biased strand distribution p-value = 3.23e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.03e-01

Only 100 of 236 total aligned reads displayed.

GGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATG  >  NC_000913/936415‑936594

ggCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCAt                                                                                         <  2:1113875/93‑1 (MQ=255)

    ccACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttc                                                                                     >  1:3888218/1‑93 (MQ=255)

    ccACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttc                                                                                     >  2:5226761/1‑93 (MQ=255)

    ccACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttc                                                                                     >  2:4438104/1‑93 (MQ=255)

     cACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttct                                                                                    <  1:579694/93‑1 (MQ=255)

     cACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttct                                                                                    <  2:254098/93‑1 (MQ=255)

      aCCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCTGCAACTCTTTGAACTGAATATTCAGCATTttctt                                                                                   >  1:4293829/1‑93 (MQ=255)

      aCCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttctt                                                                                   <  1:3313333/93‑1 (MQ=255)

      aCCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttctt                                                                                   >  1:4531952/1‑93 (MQ=255)

       ccgccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttcttc                                                                                  <  1:4912126/93‑1 (MQ=255)

       ccgccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTttcttc                                                                                  >  2:3911050/1‑93 (MQ=255)

        cgccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTtcttct                                                                                 <  2:2129749/93‑1 (MQ=255)

         gccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTcttctt                                                                                <  2:6076441/93‑1 (MQ=255)

         gccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTcttctt                                                                                >  1:4989078/1‑93 (MQ=255)

         gccgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTcttctt                                                                                >  1:1661019/1‑93 (MQ=255)

           cgTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTc                                                                              >  2:2896029/1‑93 (MQ=255)

            gTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTcc                                                                             >  2:5899769/1‑93 (MQ=255)

             tttGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCt                                                                            <  2:3752504/93‑1 (MQ=255)

             tttGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCt                                                                            >  1:3622320/1‑93 (MQ=255)

               tGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCa                                                                          <  1:781797/93‑1 (MQ=255)

               tGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCa                                                                          >  1:1412102/1‑93 (MQ=255)

                gACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCaa                                                                         >  2:1831735/1‑93 (MQ=255)

                 actaactaATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAg                                                                        >  2:6275247/1‑93 (MQ=255)

                  ctaactaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAgt                                                                       >  2:5793041/1‑92 (MQ=255)

                   taactaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCt                                                                      <  1:1712642/93‑1 (MQ=255)

                      ctaaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGat                                                                   >  2:3441086/1‑93 (MQ=255)

                       taaTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGatt                                                                  >  2:5080617/1‑93 (MQ=255)

                         aTGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGattat                                                                <  2:3938566/93‑1 (MQ=255)

                           gCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGAttatta                                                              <  2:2752532/93‑1 (MQ=255)

                             aTCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGc                                                            <  2:3115387/93‑1 (MQ=255)

                             aTCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGAATTTTCTTCTTTCCTCAAGCTGATTATTAGc                                                            >  2:4824426/1‑93 (MQ=255)

                              tCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGcc                                                           <  2:1378587/93‑1 (MQ=255)

                              tCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGcc                                                           >  1:1737586/1‑93 (MQ=255)

                              tCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGcc                                                           >  2:4914674/1‑93 (MQ=255)

                               cGTAAGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCt                                                          <  1:6152/93‑1 (MQ=255)

                                 tATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTgg                                                        >  1:2093962/1‑93 (MQ=255)

                                    gCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATTAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAAt                                                     <  2:4308927/93‑1 (MQ=255)

                                      cGGATAAGGCGCGGTAGCGTCGGATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAANCTGATTATTAGCCTGGAATag                                                   >  1:2778496/1‑93 (MQ=255)

                                      cGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATag                                                   <  1:4585446/93‑1 (MQ=255)

                                       ggATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATaga                                                  <  2:3569501/93‑1 (MQ=255)

                                       ggATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATaga                                                  <  1:4484687/93‑1 (MQ=255)

                                        gATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagag                                                 >  1:1842620/1‑93 (MQ=255)

                                        gATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagag                                                 >  1:3058297/1‑93 (MQ=255)

                                         aTAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATagaga                                                >  2:4981653/1‑93 (MQ=255)

                                            aGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTa                                             >  2:3285379/1‑93 (MQ=255)

                                                gcgGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAgg                                         <  1:6226913/93‑1 (MQ=255)

                                                 cgGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAggg                                        <  1:1724256/93‑1 (MQ=255)

                                                 cgGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAggg                                        >  1:2648671/1‑93 (MQ=255)

                                                  ggTAGCGTCGCATCCAGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTGGAGGGa                                       >  2:2489620/1‑93 (MQ=255)

                                                   gTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGaa                                      <  2:4113895/93‑1 (MQ=255)

                                                   gTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGaa                                      >  1:2151741/1‑93 (MQ=255)

                                                    tAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAAc                                     <  2:740895/93‑1 (MQ=255)

                                                      gCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTc                                   >  1:1913347/1‑93 (MQ=255)

                                                      gCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTc                                   >  1:998933/1‑93 (MQ=255)

                                                       cGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTcc                                  <  2:1999908/93‑1 (MQ=255)

                                                        gTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTccc                                 >  2:4317833/1‑93 (MQ=255)

                                                        gTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTccc                                 <  1:2469280/93‑1 (MQ=255)

                                                        gTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTccc                                 <  2:3494661/93‑1 (MQ=255)

                                                        gTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTccc                                 <  2:2216017/93‑1 (MQ=255)

                                                         tCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCg                                >  2:6344254/1‑93 (MQ=255)

                                                          cGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGa                               <  2:2094227/93‑1 (MQ=255)

                                                           gCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGAt                              <  2:2711440/93‑1 (MQ=255)

                                                             aTCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCg                            <  2:4885097/93‑1 (MQ=255)

                                                             aTCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTACCGATCg                            >  1:2042293/1‑93 (MQ=255)

                                                              tCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCgg                           <  2:3095048/93‑1 (MQ=255)

                                                              tCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCgg                           <  2:790275/93‑1 (MQ=255)

                                                                cGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGa                         <  1:5973594/93‑1 (MQ=255)

                                                                cGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTGCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGa                         <  2:2283756/93‑1 (MQ=255)

                                                                 ggCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAg                        >  1:41116/1‑93 (MQ=255)

                                                                     ctctATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGag                    >  2:2384447/1‑92 (MQ=255)

                                                                     ctctATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGAc                    >  2:4740756/1‑93 (MQ=255)

                                                                      tctATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACg                   <  2:1325238/93‑1 (MQ=255)

                                                                       ctATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGt                  >  2:3601401/1‑93 (MQ=255)

                                                                       ctATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGt                  >  1:1362986/1‑93 (MQ=255)

                                                                        tATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAGCTCCCGATCGGGAGTGACGTa                 <  1:1078205/93‑1 (MQ=255)

                                                                         aTCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTaa                >  2:5600821/1‑93 (MQ=255)

                                                                          tCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAt               <  1:4367188/93‑1 (MQ=255)

                                                                          tCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAt               <  1:5677320/93‑1 (MQ=255)

                                                                          tCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAt               <  1:4926663/93‑1 (MQ=255)

                                                                           cAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAtt              <  2:5399145/93‑1 (MQ=255)

                                                                           cAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAtt              <  1:913079/93‑1 (MQ=255)

                                                                           cAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAtt              <  1:3756307/93‑1 (MQ=255)

                                                                            aaCTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAttt             <  1:5890241/93‑1 (MQ=255)

                                                                             aCTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTg            >  2:1863327/1‑93 (MQ=255)

                                                                              cTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGa           >  1:3965689/1‑93 (MQ=255)

                                                                              cTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGCGAGTGACGTAATTTGa           >  1:2374275/1‑93 (MQ=255)

                                                                               tGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAg          <  1:5483667/93‑1 (MQ=255)

                                                                               tGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAg          <  1:6345260/93‑1 (MQ=255)

                                                                                gAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAgg         >  2:5750540/1‑93 (MQ=255)

                                                                                gAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAgg         <  1:879802/93‑1 (MQ=255)

                                                                                gAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAgg         <  1:3581775/93‑1 (MQ=255)

                                                                                  aaaTTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaa       <  1:558468/93‑1 (MQ=255)

                                                                                  aaaTTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaa       <  1:69203/93‑1 (MQ=255)

                                                                                  aaaTTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaa       <  1:2971758/93‑1 (MQ=255)

                                                                                   aaTTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaat      <  2:1165869/93‑1 (MQ=255)

                                                                                    aTTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaata     >  2:281579/1‑93 (MQ=255)

                                                                                    aTTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaata     >  2:4674229/1‑93 (MQ=255)

                                                                                     ttCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaataa    >  1:3199710/1‑93 (MQ=255)

                                                                                      tCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaataat   <  1:6392129/93‑1 (MQ=255)

                                                                                      tCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGaataat   >  2:2371404/1‑93 (MQ=255)

GGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATG  >  NC_000913/936415‑936594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGATGA  >  NC_000913/936413‑936598

CTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCA                                                                                              >  SRR4302537.2540964/1‑94 (MQ=60)

CTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCA                                                                                              <  SRR4302537.1711455/94‑1 (MQ=60)

 TGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCAT                                                                                             <  SRR4302537.2814015/94‑1 (MQ=60)

     CCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTC                                                                                         >  SRR4302537.3915416/1‑94 (MQ=60)

      CCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCT                                                                                        <  SRR4302537.2178755/94‑1 (MQ=60)

       CACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCTGCAACTCTTTGAACTGAATATTCAGCATTTTCTT                                                                                       >  SRR4302537.4323683/1‑94 (MQ=60)

       CACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTT                                                                                       >  SRR4302537.4323684/1‑94 (MQ=60)

       CACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTT                                                                                       >  SRR4302537.4563335/1‑94 (MQ=60)

       CACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTT                                                                                       <  SRR4302537.583660/94‑1 (MQ=60)

        ACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTC                                                                                      <  SRR4302537.3336772/94‑1 (MQ=60)

        ACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTC                                                                                      <  SRR4302537.6357658/94‑1 (MQ=60)

         CCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCT                                                                                     <  SRR4302537.4946029/94‑1 (MQ=60)

          CGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTT                                                                                    >  SRR4302537.1672660/1‑94 (MQ=60)

          CGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTT                                                                                    >  SRR4302537.5023464/1‑94 (MQ=60)

           GCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTT                                                                                   >  SRR4302537.450027/1‑94 (MQ=60)

           GCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTT                                                                                   >  SRR4302537.4962766/1‑94 (MQ=60)

             CGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCC                                                                                 >  SRR4302537.99555/1‑94 (MQ=60)

              GTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCT                                                                                >  SRR4302537.3647851/1‑94 (MQ=60)

               TTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTC                                                                               >  SRR4302537.4286329/1‑94 (MQ=60)

               TTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTC                                                                               <  SRR4302537.1470151/94‑1 (MQ=60)

                TTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCA                                                                              <  SRR4302537.557406/94‑1 (MQ=60)

                TTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCA                                                                              >  SRR4302537.1421934/1‑94 (MQ=60)

                 TGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAA                                                                             <  SRR4302537.787163/94‑1 (MQ=60)

                  GACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAG                                                                            >  SRR4302537.1724718/1‑94 (MQ=60)

                  GACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAG                                                                            >  SRR4302537.890452/1‑94 (MQ=60)

                    CTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCT                                                                          >  SRR4302537.1866796/1‑94 (MQ=60)

                     TAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTG                                                                         <  SRR4302537.1724602/94‑1 (MQ=60)

                     TAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTG                                                                         >  SRR4302537.4740636/1‑94 (MQ=60)

                      AACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGA                                                                        >  SRR4302537.3383931/1‑94 (MQ=60)

                      AACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGA                                                                        >  SRR4302537.3632775/1‑94 (MQ=60)

                      AACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGA                                                                        >  SRR4302537.3779299/1‑94 (MQ=60)

                        CTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATT                                                                      <  SRR4302537.1742779/94‑1 (MQ=60)

                        CTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATT                                                                      >  SRR4302537.73715/1‑94 (MQ=60)

                         TAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTA                                                                     >  SRR4302537.122953/1‑94 (MQ=60)

                          AATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTAT                                                                    >  SRR4302537.6414876/1‑94 (MQ=60)

                          AATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTAT                                                                    <  SRR4302537.6499800/94‑1 (MQ=60)

                           ATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATT                                                                   >  SRR4302537.923045/1‑94 (MQ=60)

                             GCATCGTATGCCGGATAAGCCGCGGTAGCGTCGCATCCGGCTCTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAG                                                                 <  SRR4302537.6239181/94‑1 (MQ=60)

                              CATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGC                                                                >  SRR4302537.5389762/1‑94 (MQ=60)

                              CATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGC                                                                <  SRR4302537.3550098/94‑1 (MQ=60)

                               ATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCC                                                               >  SRR4302537.1749704/1‑94 (MQ=60)

                               ATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCC                                                               >  SRR4302537.1790985/1‑94 (MQ=60)

                               ATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCC                                                               >  SRR4302537.1961778/1‑94 (MQ=60)

                                TCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCT                                                              <  SRR4302537.3044888/94‑1 (MQ=60)

                                TCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCT                                                              <  SRR4302537.1740542/94‑1 (MQ=60)

                                TCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCT                                                              <  SRR4302537.3937845/94‑1 (MQ=60)

                                 CGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTG                                                             >  SRR4302537.2629348/1‑94 (MQ=60)

                                 CGTAAGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTG                                                             <  SRR4302537.6198/94‑1 (MQ=60)

                                  GTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGG                                                            >  SRR4302537.2108731/1‑94 (MQ=60)

                                   TATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTANCNTGGA                                                           >  SRR4302537.1315099/1‑94 (MQ=60)

                                    ATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAA                                                          >  SRR4302537.6147718/1‑94 (MQ=60)

                                     TGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAAT                                                         >  SRR4302537.4553385/1‑94 (MQ=60)

                                      GCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATA                                                        <  SRR4302537.2454515/94‑1 (MQ=60)

                                       CCGGATAAGGCGCGGTAGCGTCGGATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAANCTGATTATTAGCCTGGAATAG                                                       >  SRR4302537.2797925/1‑94 (MQ=60)

                                        CGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGA                                                      <  SRR4302537.4617165/94‑1 (MQ=60)

                                         GGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                                     >  SRR4302537.1855445/1‑94 (MQ=60)

                                         GGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                                     <  SRR4302537.3039198/94‑1 (MQ=60)

                                         GGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                                     >  SRR4302537.3079605/1‑94 (MQ=60)

                                         GGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                                     <  SRR4302537.4515711/94‑1 (MQ=60)

                                         GGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                                     >  SRR4302537.1448225/1‑94 (MQ=60)

                                           ATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAG                                                   <  SRR4302537.4564029/94‑1 (MQ=60)

                                             AAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTA                                                 <  SRR4302537.5256182/94‑1 (MQ=60)

                                               GGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGA                                               <  SRR4302537.379143/94‑1 (MQ=60)

                                                GCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAG                                              <  SRR4302537.6292345/94‑1 (MQ=60)

                                                  GCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGG                                            >  SRR4302537.2667197/1‑94 (MQ=60)

                                                  GCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGG                                            <  SRR4302537.6269761/94‑1 (MQ=60)

                                                   CGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGA                                           <  SRR4302537.1736305/94‑1 (MQ=60)

                                                    GGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAA                                          >  SRR4302537.2166907/1‑94 (MQ=60)

                                                       AGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTC                                       >  SRR4302537.1926628/1‑94 (MQ=60)

                                                       AGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTC                                       >  SRR4302537.1005828/1‑94 (MQ=60)

                                                        GCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCC                                      >  SRR4302537.5882471/1‑94 (MQ=60)

                                                         CGTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCC                                     <  SRR4302537.5637926/94‑1 (MQ=60)

                                                          GTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCG                                    <  SRR4302537.779978/94‑1 (MQ=60)

                                                          GTCGCATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCG                                    <  SRR4302537.2486641/94‑1 (MQ=60)

                                                              CATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTACCGATCG                                >  SRR4302537.2056574/1‑94 (MQ=60)

                                                               ATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGG                               >  SRR4302537.2016624/1‑94 (MQ=60)

                                                               ATCCGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGG                               >  SRR4302537.5940335/1‑94 (MQ=60)

                                                                  CGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAG                            >  SRR4302537.41423/1‑94 (MQ=60)

                                                                  CGGCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAG                            <  SRR4302537.6014599/94‑1 (MQ=60)

                                                                    GCACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTG                          <  SRR4302537.2651491/94‑1 (MQ=60)

                                                                     CACTCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGATGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGA                         >  SRR4302537.238667/1‑94 (MQ=60)

                                                                        TCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGT                      >  SRR4302537.4014824/1‑94 (MQ=60)

                                                                        TCTATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGT                      >  SRR4302537.1372480/1‑94 (MQ=60)

                                                                          TATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAGCTCCCGATCGGGAGTGACGTAA                    <  SRR4302537.1085642/94‑1 (MQ=60)

                                                                          TATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA                    >  SRR4302537.5730564/1‑94 (MQ=60)

                                                                          TATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA                    <  SRR4302537.2099223/94‑1 (MQ=60)

                                                                          TATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA                    >  SRR4302537.801217/1‑94 (MQ=60)

                                                                           ATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGTCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAT                   >  SRR4302537.5969359/1‑94 (MQ=60)

                                                                           ATCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAT                   >  SRR4302537.2887562/1‑94 (MQ=60)

                                                                            TCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATT                  <  SRR4302537.4960626/94‑1 (MQ=60)

                                                                            TCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATT                  <  SRR4302537.4397373/94‑1 (MQ=60)

                                                                            TCAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATT                  <  SRR4302537.5716164/94‑1 (MQ=60)

                                                                             CAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTT                 <  SRR4302537.1704174/94‑1 (MQ=60)

                                                                             CAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTT                 <  SRR4302537.3782680/94‑1 (MQ=60)

                                                                             CAACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTT                 <  SRR4302537.919379/94‑1 (MQ=60)

                                                                              AACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTG                <  SRR4302537.5930657/94‑1 (MQ=60)

                                                                               ACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGA               >  SRR4302537.3993430/1‑94 (MQ=60)

                                                                               ACTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGCGAGTGACGTAATTTGA               >  SRR4302537.2391005/1‑94 (MQ=60)

                                                                                CTGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAG              <  SRR4302537.3185269/94‑1 (MQ=60)

                                                                                 TGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGG             >  SRR4302537.4036852/1‑94 (MQ=60)

                                                                                 TGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGG             <  SRR4302537.5521102/94‑1 (MQ=60)

                                                                                 TGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGG             <  SRR4302537.6388601/94‑1 (MQ=60)

                                                                                 TGAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGG             >  SRR4302537.4641849/1‑94 (MQ=60)

                                                                                  GAAAGTTCAGCAGTTTCTTCTTTGCTCAAGCTGATTGTGAGCCCGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGA            <  SRR4302537.3301672/94‑1 (MQ=60)

                                                                                  GAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGA            <  SRR4302537.3607023/94‑1 (MQ=60)

                                                                                  GAAAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGA            <  SRR4302537.885857/94‑1 (MQ=60)

                                                                                    AAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAAT          <  SRR4302537.562313/94‑1 (MQ=60)

                                                                                    AAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAAT          <  SRR4302537.69710/94‑1 (MQ=60)

                                                                                    AAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAAT          <  SRR4302537.2992582/94‑1 (MQ=60)

                                                                                    AAATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAAT          <  SRR4302537.2153879/94‑1 (MQ=60)

                                                                                     AATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATA         <  SRR4302537.3906257/94‑1 (MQ=60)

                                                                                     AATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATA         >  SRR4302537.5825527/1‑94 (MQ=60)

                                                                                      ATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAA        >  SRR4302537.4951966/1‑94 (MQ=60)

                                                                                      ATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAT        >  SRR4302537.4414861/1‑94 (MQ=60)

                                                                                      ATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAA        >  SRR4302537.138467/1‑94 (MQ=60)

                                                                                      ATTCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAA        >  SRR4302537.3222204/1‑94 (MQ=60)

                                                                                        TCAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATG      <  SRR4302537.6435675/94‑1 (MQ=60)

                                                                                         CAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGA     <  SRR4302537.2728992/94‑1 (MQ=60)

                                                                                         CAGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGA     >  SRR4302537.2768223/1‑94 (MQ=60)

                                                                                          AGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGAT    >  SRR4302537.57393/1‑94 (MQ=60)

                                                                                          AGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGAT    >  SRR4302537.2407820/1‑94 (MQ=60)

                                                                                          AGCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGAT    <  SRR4302537.4219295/94‑1 (MQ=60)

                                                                                           GCATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGATG   <  SRR4302537.6068177/94‑1 (MQ=60)

                                                                                            CATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGATGA  <  SRR4302537.330369/94‑1 (MQ=60)

                                                                                            CATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGATGA  >  SRR4302537.1338827/1‑94 (MQ=60)

                                                                                            CATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGATGA  >  SRR4302537.4359919/1‑94 (MQ=60)

CTGGCCCCACCGCCGTTTGACTAACTAATGCATCGTATGCCGGATAAGGCGCGGTAGCGTCGCATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAATTTGAGGAATAATGATGA  >  NC_000913/936413‑936598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`