Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	964,158	T→C	L206L (TTA→CTA)	ycaI →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	964,158	0	T	C	100.0%	829.2 / NA	236	L206L (TTA→CTA)	ycaI	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (104/132); total (104/132)

Only 100 of 245 total aligned reads displayed.

CTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGTTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCG  >  NC_000913/964068‑964247

cTGCGTGCACAGTATCTGGCGTCACTACAACCAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTa                                                                                         <  1:1474975/93‑1 (MQ=255)

cTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTa                                                                                         <  1:79089/93‑1 (MQ=255)

 tGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGACCGGCTAt                                                                                        >  2:1422871/1‑93 (MQ=255)

 tGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTAt                                                                                        <  2:5313722/93‑1 (MQ=255)

      gCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTc                                                                                   <  1:3144524/93‑1 (MQ=255)

        acaGTATCTGCCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTccc                                                                                 <  2:5943903/93‑1 (MQ=255)

         caGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGGACGGCTATCAGTcgcc                                                                                >  2:3363001/1‑93 (MQ=255)

         caGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTcccc                                                                                >  1:1134430/1‑93 (MQ=255)

         caGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTcccc                                                                                <  2:1621586/93‑1 (MQ=255)

          aGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCa                                                                               <  1:3109093/93‑1 (MQ=255)

            tATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCaaa                                                                             <  1:4119028/93‑1 (MQ=255)

            tATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCaaa                                                                             <  1:4339853/93‑1 (MQ=255)

             aTCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGTACGGCTATCCGTCCCCAAAg                                                                            >  2:711304/1‑93 (MQ=255)

             aTCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAg                                                                            <  2:2793602/93‑1 (MQ=255)

              tCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGa                                                                           >  1:5734790/1‑93 (MQ=255)

              tCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGa                                                                           >  1:2951684/1‑93 (MQ=255)

               cTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGaa                                                                          >  1:6467027/1‑93 (MQ=255)

               cTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGaa                                                                          <  2:4363106/93‑1 (MQ=255)

               cTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGaa                                                                          >  2:968259/1‑93 (MQ=255)

                tGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGaaa                                                                         >  2:5451573/1‑93 (MQ=255)

                    gTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCaa                                                                     >  2:3142710/1‑93 (MQ=255)

                       aCTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCaaaaa                                                                  <  1:1121051/93‑1 (MQ=255)

                       aCTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCaaaaa                                                                  >  1:5058650/1‑93 (MQ=255)

                       aCTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCaaaaa                                                                  <  1:4359511/93‑1 (MQ=255)

                       aCTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCaaaaa                                                                  <  2:381577/93‑1 (MQ=255)

                        cTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAat                                                                 >  1:5111412/1‑93 (MQ=255)

                        cTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAat                                                                 <  2:173384/93‑1 (MQ=255)

                        cTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAat                                                                 >  1:1574666/1‑93 (MQ=255)

                         tACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAata                                                                >  2:6057153/1‑93 (MQ=255)

                         tACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAata                                                                <  1:6263134/93‑1 (MQ=255)

                           caaacaaCGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATc                                                              <  1:3624389/93‑1 (MQ=255)

                           caaacaaCGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATc                                                              >  1:2495359/1‑93 (MQ=255)

                           caaacaaCGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATc                                                              >  1:4171735/1‑93 (MQ=255)

                            aaacaaCGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCa                                                             >  1:1250212/1‑93 (MQ=255)

                            aaacaaCGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCa                                                             >  1:1376264/1‑93 (MQ=255)

                            aaacaaCGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCa                                                             <  1:2523466/93‑1 (MQ=255)

                             aacaacGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCAt                                                            <  1:2580307/93‑1 (MQ=255)

                             aacaacGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCAt                                                            <  1:756348/93‑1 (MQ=255)

                              acaacGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATg                                                           >  1:468039/1‑93 (MQ=255)

                              acaacGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATg                                                           <  2:1295659/93‑1 (MQ=255)

                              acaacGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATg                                                           <  1:1850200/93‑1 (MQ=255)

                                aacGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATgcg                                                         >  2:1010560/1‑93 (MQ=255)

                                 acGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATgcgc                                                        <  1:621401/93‑1 (MQ=255)

                                   gCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGa                                                      <  1:1347097/93‑1 (MQ=255)

                                    cTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGAt                                                     <  2:2342392/93‑1 (MQ=255)

                                        aaCCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTg                                                 <  1:5760864/93‑1 (MQ=255)

                                         aCCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTgg                                                >  2:4987967/1‑93 (MQ=255)

                                         aCCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTgg                                                <  1:6299975/93‑1 (MQ=255)

                                          cccTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGa                                               <  2:1927942/93‑1 (MQ=255)

                                          cccTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGa                                               >  2:424955/1‑93 (MQ=255)

                                           ccTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGaa                                              >  2:5231947/1‑93 (MQ=255)

                                           ccTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGaa                                              <  1:3784989/93‑1 (MQ=255)

                                           ccTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGaa                                              >  1:451385/1‑93 (MQ=255)

                                           ccTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGaa                                              <  1:4852177/93‑1 (MQ=255)

                                            cTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAAc                                             <  2:2675770/93‑1 (MQ=255)

                                            cTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAAc                                             >  2:1795637/1‑93 (MQ=255)

                                                  gTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCa                                       <  1:4598578/93‑1 (MQ=255)

                                                  gTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCa                                       >  2:4708715/1‑93 (MQ=255)

                                                  gTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCa                                       <  2:2435472/93‑1 (MQ=255)

                                                      aaTGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTa                                   <  1:3684649/93‑1 (MQ=255)

                                                       aTGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTaa                                  <  1:2223223/93‑1 (MQ=255)

                                                         gCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATg                                <  2:4553966/93‑1 (MQ=255)

                                                         gCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATg                                <  2:2055055/93‑1 (MQ=255)

                                                           ggTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGc                              <  1:2320808/93‑1 (MQ=255)

                                                            gTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCg                             >  2:3538422/1‑93 (MQ=255)

                                                            gTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCg                             >  1:1004453/1‑93 (MQ=255)

                                                             ttATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGa                            >  1:1913806/1‑93 (MQ=255)

                                                              tATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGat                           <  2:911096/93‑1 (MQ=255)

                                                               aTTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGata                          <  2:3913163/93‑1 (MQ=255)

                                                               aTTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGata                          >  2:4852556/1‑93 (MQ=255)

                                                                ttCTTGGTTTAGGTATGGGGGCACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGatat                         >  1:1987662/1‑93 (MQ=255)

                                                                ttCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGatat                         <  1:6019816/93‑1 (MQ=255)

                                                                ttCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGatat                         >  2:4421486/1‑93 (MQ=255)

                                                                 tCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATc                        <  1:3412872/93‑1 (MQ=255)

                                                                  cTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCGAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCTCATTTAATGGCGATATCg                       <  1:5865083/93‑1 (MQ=255)

                                                                  cTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCg                       <  2:3438943/93‑1 (MQ=255)

                                                                   ttGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCgg                      <  1:5405043/93‑1 (MQ=255)

                                                                       tttAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGAtt                  >  2:1238836/1‑93 (MQ=255)

                                                                         tAGGTATGGGGGAACGGCTATCCGTCCCTAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGAATTTAATGGCGATATCGGGATTGc                <  1:6398398/93‑1 (MQ=255)

                                                                          aGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGAGATTGca               <  1:526618/93‑1 (MQ=255)

                                                                           ggTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGcac              >  1:2019911/1‑93 (MQ=255)

                                                                            gTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGcaca             >  2:1968035/1‑93 (MQ=255)

                                                                            gTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATAGCGATATCGGCATTGcaca             <  2:6326563/93‑1 (MQ=255)

                                                                             tATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACAt            >  2:134310/1‑93 (MQ=255)

                                                                             tATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACAt            <  2:5633997/93‑1 (MQ=255)

                                                                              aTGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATc           <  1:243875/93‑1 (MQ=255)

                                                                              aTGGGGGAACCGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATc           <  1:24467/93‑1 (MQ=255)

                                                                                 ggggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGCACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCt        >  1:3737514/1‑93 (MQ=255)

                                                                                 ggggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCt        <  1:1747837/93‑1 (MQ=255)

                                                                                  gggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCtt       <  2:50443/93‑1 (MQ=255)

                                                                                  gggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCtt       >  1:1550107/1‑93 (MQ=255)

                                                                                  gggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCtt       <  1:2809647/93‑1 (MQ=255)

                                                                                   ggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCTGGATTGCACATCGCttt      >  2:4621660/1‑93 (MQ=255)

                                                                                   ggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCttt      <  1:3337379/93‑1 (MQ=255)

                                                                                   ggAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCttt      <  2:609525/93‑1 (MQ=255)

                                                                                    gAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCtttt     >  1:4010967/1‑93 (MQ=255)

                                                                                     aaCGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTg    <  2:5733861/93‑1 (MQ=255)

                                                                                     aaCGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTg    <  2:1529851/93‑1 (MQ=255)

                                                                                      aCGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTgc   >  1:4970555/1‑93 (MQ=255)

                                                                                      aCGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTgc   <  2:72110/93‑1 (MQ=255)

CTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGTTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCG  >  NC_000913/964068‑964247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCCTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGTTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCGT  >  NC_000913/964065‑964251

AGCCTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGC                                                                                               >  SRR4302537.4975313/1‑94 (MQ=60)

 GCCTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCT                                                                                              <  SRR4302537.912255/94‑1 (MQ=60)

 GCCTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCT                                                                                              <  SRR4302537.4028207/94‑1 (MQ=60)

   CTGCGTGCACAGTATCTGGCGTCACTACAACCAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTAT                                                                                            <  SRR4302537.1485224/94‑1 (MQ=60)

   CTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTAT                                                                                            >  SRR4302537.750481/1‑94 (MQ=60)

   CTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTAT                                                                                            >  SRR4302537.4706455/1‑94 (MQ=60)

   CTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTAT                                                                                            <  SRR4302537.79671/94‑1 (MQ=60)

   CTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTAT                                                                                            <  SRR4302537.1450926/94‑1 (MQ=60)

     GCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCC                                                                                          <  SRR4302537.361264/94‑1 (MQ=60)

     GCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCC                                                                                          >  SRR4302537.2330926/1‑94 (MQ=60)

     GCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCC                                                                                          <  SRR4302537.122590/94‑1 (MQ=60)

     GCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCC                                                                                          <  SRR4302537.4355253/94‑1 (MQ=60)

         GCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCC                                                                                      <  SRR4302537.3166594/94‑1 (MQ=60)

           ACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCC                                                                                    <  SRR4302537.885841/94‑1 (MQ=60)

           ACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCC                                                                                    >  SRR4302537.1142310/1‑94 (MQ=60)

            CAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCA                                                                                   >  SRR4302537.5896807/1‑94 (MQ=60)

             AGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAA                                                                                  >  SRR4302537.4081979/1‑94 (MQ=60)

             AGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAA                                                                                  <  SRR4302537.3130804/94‑1 (MQ=60)

               TATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAG                                                                                <  SRR4302537.4147791/94‑1 (MQ=60)

               TATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAG                                                                                <  SRR4302537.4369965/94‑1 (MQ=60)

                ATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGA                                                                               >  SRR4302537.2972397/1‑94 (MQ=60)

                ATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGA                                                                               >  SRR4302537.5774054/1‑94 (MQ=60)

                 TCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAA                                                                              >  SRR4302537.6510840/1‑94 (MQ=60)

                 TCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAA                                                                              <  SRR4302537.1933673/94‑1 (MQ=60)

                  CTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAA                                                                             <  SRR4302537.3407596/94‑1 (MQ=60)

                  CTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAA                                                                             <  SRR4302537.4396642/94‑1 (MQ=60)

                   TGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAAT                                                                            <  SRR4302537.1736953/94‑1 (MQ=60)

                      CGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAA                                                                         >  SRR4302537.6362354/1‑94 (MQ=60)

                      CGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAA                                                                         <  SRR4302537.5104146/94‑1 (MQ=60)

                         CACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGTACGGCTATCCGTCTCCATAGAAATCAATAA                                                                      >  SRR4302537.4956852/1‑94 (MQ=60)

                         CACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAA                                                                      >  SRR4302537.5093471/1‑94 (MQ=60)

                         CACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAA                                                                      <  SRR4302537.2055715/94‑1 (MQ=60)

                          ACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAAT                                                                     <  SRR4302537.6094327/94‑1 (MQ=60)

                          ACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAAT                                                                     <  SRR4302537.4389680/94‑1 (MQ=60)

                          ACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAAT                                                                     <  SRR4302537.1128820/94‑1 (MQ=60)

                          ACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAAT                                                                     <  SRR4302537.5463432/94‑1 (MQ=60)

                          ACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAAT                                                                     >  SRR4302537.5146638/1‑94 (MQ=60)

                          ACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAAT                                                                     >  SRR4302537.1585650/1‑94 (MQ=60)

                           CTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATA                                                                    <  SRR4302537.3681906/94‑1 (MQ=60)

                           CTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATA                                                                    >  SRR4302537.5842938/1‑94 (MQ=60)

                            TACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATAT                                                                   >  SRR4302537.1878787/1‑94 (MQ=60)

                            TACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATAT                                                                   <  SRR4302537.6306128/94‑1 (MQ=60)

                             ACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATC                                                                  >  SRR4302537.4200870/1‑94 (MQ=60)

                             ACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATC                                                                  >  SRR4302537.2512926/1‑94 (MQ=60)

                              CAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCA                                                                 <  SRR4302537.2974946/94‑1 (MQ=60)

                              CAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCA                                                                 <  SRR4302537.4180642/94‑1 (MQ=60)

                              CAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCA                                                                 >  SRR4302537.1385871/1‑94 (MQ=60)

                              CAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCA                                                                 >  SRR4302537.1258916/1‑94 (MQ=60)

                              CAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCA                                                                 >  SRR4302537.4976735/1‑94 (MQ=60)

                              CAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCA                                                                 <  SRR4302537.3649932/94‑1 (MQ=60)

                               AAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCAT                                                                <  SRR4302537.2541185/94‑1 (MQ=60)

                               AAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCAT                                                                >  SRR4302537.3064632/1‑94 (MQ=60)

                                AACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATG                                                               >  SRR4302537.471251/1‑94 (MQ=60)

                                AACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATG                                                               >  SRR4302537.771117/1‑94 (MQ=60)

                                AACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATG                                                               <  SRR4302537.761507/94‑1 (MQ=60)

                                AACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATG                                                               <  SRR4302537.2598370/94‑1 (MQ=60)

                                AACAACGCTGAAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATG                                                               >  SRR4302537.3261868/1‑94 (MQ=60)

                                 ACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGC                                                              <  SRR4302537.1863069/94‑1 (MQ=60)

                                 ACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGC                                                              <  SRR4302537.1972684/94‑1 (MQ=60)

                                  CAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCG                                                             <  SRR4302537.5913216/94‑1 (MQ=60)

                                   AACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGC                                                            >  SRR4302537.3923615/1‑94 (MQ=60)

                                    ACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCG                                                           <  SRR4302537.625633/94‑1 (MQ=60)

                                     CGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGA                                                          >  SRR4302537.5290196/1‑94 (MQ=60)

                                      GCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGAT                                                         <  SRR4302537.1356487/94‑1 (MQ=60)

                                       CTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATA                                                        <  SRR4302537.6445562/94‑1 (MQ=60)

                                       CTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATA                                                        <  SRR4302537.3773253/94‑1 (MQ=60)

                                        TGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATAC                                                       <  SRR4302537.4379789/94‑1 (MQ=60)

                                        TGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATAC                                                       >  SRR4302537.2569591/1‑94 (MQ=60)

                                          CAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTG                                                     <  SRR4302537.2463944/94‑1 (MQ=60)

                                           AACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGG                                                    <  SRR4302537.1374763/94‑1 (MQ=60)

                                           AACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGG                                                    <  SRR4302537.4561651/94‑1 (MQ=60)

                                           AACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGG                                                    <  SRR4302537.5800327/94‑1 (MQ=60)

                                           AACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGG                                                    >  SRR4302537.716742/1‑94 (MQ=60)

                                           AACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGG                                                    <  SRR4302537.2461410/94‑1 (MQ=60)

                                            ACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGA                                                   <  SRR4302537.3756104/94‑1 (MQ=60)

                                            ACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGA                                                   <  SRR4302537.2596419/94‑1 (MQ=60)

                                            ACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGA                                                   <  SRR4302537.6343123/94‑1 (MQ=60)

                                            ACCCTATCCGTGGAATGCGGTTATTCTTCGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGA                                                   <  SRR4302537.6262443/94‑1 (MQ=60)

                                             CCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAA                                                  >  SRR4302537.454510/1‑94 (MQ=60)

                                              CCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGTGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAAC                                                 <  SRR4302537.2018803/94‑1 (MQ=60)

                                              CCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAAC                                                 <  SRR4302537.3811563/94‑1 (MQ=60)

                                              CCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAAC                                                 <  SRR4302537.4885650/94‑1 (MQ=60)

                                              CCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAAC                                                 >  SRR4302537.1158908/1‑94 (MQ=60)

                                               CTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACG                                                <  SRR4302537.3580602/94‑1 (MQ=60)

                                                     GTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCAT                                          <  SRR4302537.4630403/94‑1 (MQ=60)

                                                       GTAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTT                                        <  SRR4302537.4701706/94‑1 (MQ=60)

                                                         AATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAA                                      >  SRR4302537.6328677/1‑94 (MQ=60)

                                                         AATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAA                                      <  SRR4302537.3710564/94‑1 (MQ=60)

                                                          ATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAAT                                     <  SRR4302537.2238885/94‑1 (MQ=60)

                                                           TGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATG                                    <  SRR4302537.1129076/94‑1 (MQ=60)

                                                             CGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGCAATAAAAAATATCATGCGCGATACTGGAACGGCGCACTTAATGGC                                  >  SRR4302537.3184132/1‑94 (MQ=60)

                                                             CGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGC                                  <  SRR4302537.21067/94‑1 (MQ=60)

                                                             CGGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGC                                  >  SRR4302537.5777192/1‑94 (MQ=60)

                                                              GGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCG                                 <  SRR4302537.2337196/94‑1 (MQ=60)

                                                              GGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCG                                 >  SRR4302537.1011386/1‑94 (MQ=60)

                                                              GGTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCG                                 <  SRR4302537.3725207/94‑1 (MQ=60)

                                                               GTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGA                                >  SRR4302537.1491460/1‑94 (MQ=60)

                                                               GTTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGA                                >  SRR4302537.1927089/1‑94 (MQ=60)

                                                                TTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGAT                               <  SRR4302537.5064020/94‑1 (MQ=60)

                                                                TTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGAT                               <  SRR4302537.5706182/94‑1 (MQ=60)

                                                                TTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGAT                               >  SRR4302537.2516353/1‑94 (MQ=60)

                                                                TTATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGAT                               >  SRR4302537.249831/1‑94 (MQ=60)

                                                                TTATTCTTGGTTGAGGTATGGGGGAACGGATATCCGTCCCCAAAGAAAGCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGAT                               <  SRR4302537.4110077/94‑1 (MQ=60)

                                                                 TATTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATA                              <  SRR4302537.4757621/94‑1 (MQ=60)

                                                                  ATTCTTGGTTTAGGTATGGGGGCACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATAT                             >  SRR4302537.2001482/1‑94 (MQ=60)

                                                                   TTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATC                            >  SRR4302537.4461394/1‑94 (MQ=60)

                                                                   TTCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATC                            <  SRR4302537.6061173/94‑1 (MQ=60)

                                                                    TCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCG                           >  SRR4302537.6369385/1‑94 (MQ=60)

                                                                    TCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCG                           <  SRR4302537.3437042/94‑1 (MQ=60)

                                                                    TCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCG                           <  SRR4302537.87248/94‑1 (MQ=60)

                                                                    TCTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCG                           <  SRR4302537.3252448/94‑1 (MQ=60)

                                                                     CTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCGAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCTCATTTAATGGCGATATCGG                          <  SRR4302537.5905313/94‑1 (MQ=60)

                                                                     CTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGG                          <  SRR4302537.1835680/94‑1 (MQ=60)

                                                                     CTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGG                          <  SRR4302537.3163390/94‑1 (MQ=60)

                                                                     CTTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGG                          <  SRR4302537.4321322/94‑1 (MQ=60)

                                                                      TTGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGG                         <  SRR4302537.5441917/94‑1 (MQ=60)

                                                                       TGGTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGA                        >  SRR4302537.2663712/1‑94 (MQ=60)

                                                                         GTTTAGGTATGGGGGAACGGCTATCCGTCCCCAAATAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATT                      >  SRR4302537.540206/1‑94 (MQ=60)

                                                                          TTTAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTG                     <  SRR4302537.1368788/94‑1 (MQ=60)

                                                                            TAGGTATGGGGGAACGGCTATCCGTCCCTAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGAATTTAATGGCGATATCGGGATTGCA                   <  SRR4302537.6441963/94‑1 (MQ=60)

                                                                            TAGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCA                   <  SRR4302537.2391617/94‑1 (MQ=60)

                                                                             AGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCAC                  >  SRR4302537.2034000/1‑94 (MQ=60)

                                                                             AGGTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGAGATTGCAC                  <  SRR4302537.530228/94‑1 (MQ=60)

                                                                               GTATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACAT                <  SRR4302537.1519168/94‑1 (MQ=60)

                                                                                 ATGGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCG              <  SRR4302537.245605/94‑1 (MQ=60)

                                                                                 ATGGGGGAACCGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCG              <  SRR4302537.24657/94‑1 (MQ=60)

                                                                                   GGGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGCACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCT            >  SRR4302537.3763758/1‑94 (MQ=60)

                                                                                    GGGGAGCGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTT           <  SRR4302537.2839356/94‑1 (MQ=60)

                                                                                    GGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTT           <  SRR4302537.1760030/94‑1 (MQ=60)

                                                                                    GGGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTT           >  SRR4302537.1560925/1‑94 (MQ=60)

                                                                                     GGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTT          <  SRR4302537.2829288/94‑1 (MQ=60)

                                                                                     GGGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTT          >  SRR4302537.1600349/1‑94 (MQ=60)

                                                                                      TGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTT         >  SRR4302537.4039055/1‑94 (MQ=60)

                                                                                      GGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAGCGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTT         <  SRR4302537.6194302/94‑1 (MQ=60)

                                                                                      GGAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTT         <  SRR4302537.3361002/94‑1 (MQ=60)

                                                                                       GAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTG        >  SRR4302537.5196636/1‑94 (MQ=60)

                                                                                       GAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTG        >  SRR4302537.1297280/1‑94 (MQ=60)

                                                                                       GAACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTG        <  SRR4302537.1585281/94‑1 (MQ=60)

                                                                                        AACGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGC       >  SRR4302537.5004812/1‑94 (MQ=60)

                                                                                          CGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGG     <  SRR4302537.1019629/94‑1 (MQ=60)

                                                                                          CGGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGG     <  SRR4302537.2447159/94‑1 (MQ=60)

                                                                                           GGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGC    <  SRR4302537.5400626/94‑1 (MQ=60)

                                                                                           GGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGC    <  SRR4302537.1305724/94‑1 (MQ=60)

                                                                                           GGCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGC    >  SRR4302537.992798/1‑94 (MQ=60)

                                                                                            GCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCG   <  SRR4302537.152374/94‑1 (MQ=60)

                                                                                            GCTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCG   <  SRR4302537.1165743/94‑1 (MQ=60)

                                                                                             CTATCCGTCCCCAAAGAACTCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCGT  >  SRR4302537.6141859/1‑94 (MQ=60)

                                                                                             CTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCGT  >  SRR4302537.4277347/1‑94 (MQ=60)

                                                                                             CTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCGT  >  SRR4302537.3226443/1‑94 (MQ=60)

AGCCTGCGTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATCCGTGGAATGCGGTTATTCTTGGTTTAGGTATGGGGGAACGGTTATCCGTCCCCAAAGAAATCAAAAATATCATGCGCGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTGCGGCGT  >  NC_000913/964065‑964251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`