Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,982,089 A→G L335P (CTC→CCC)  araG ← ATP‑binding component of high‑affinity L‑arabinose transport system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,982,0890AG95.5% 635.4 / 13.8 202L335P (CTC→CCC) araGATP‑binding component of high‑affinity L‑arabinose transport system
Reads supporting (aligned to +/- strand):  ref base A (4/5);  new base G (85/107);  total (89/113)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01

Only 100 of 210 total aligned reads displayed.

AGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCG  >  NC_000913/1981999‑1982176
                                                                                          |                                                                                       
aGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGc                                                                                       <  1:1511404/93‑1 (MQ=255)
 gCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCgggcagggca                                                                                      <  2:3054425/93‑1 (MQ=255)
   acaTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGTAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatc                                                                                    >  1:3456232/1‑93 (MQ=255)
   acaTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatc                                                                                    <  2:2864019/93‑1 (MQ=255)
   acaTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatc                                                                                    >  1:2086582/1‑93 (MQ=255)
   acaTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatc                                                                                    >  2:3853491/1‑93 (MQ=255)
   acaTGTTTACGTCAGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatc                                                                                    >  2:5559348/1‑93 (MQ=255)
    caTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatca                                                                                   >  2:652496/1‑93 (MQ=255)
    caTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatca                                                                                   >  2:2397074/1‑93 (MQ=255)
    caTGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGcatca                                                                                   >  2:336952/1‑93 (MQ=255)
       gTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGc                                                                                <  2:5490537/93‑1 (MQ=255)
        tttACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGcc                                                                               >  1:5349612/1‑93 (MQ=255)
        tttACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGcc                                                                               >  2:5351182/1‑93 (MQ=255)
        tttACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGcc                                                                               <  1:2579879/93‑1 (MQ=255)
         ttACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCt                                                                              <  2:1942864/93‑1 (MQ=255)
            cGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCg                                                                           >  1:3290369/1‑93 (MQ=255)
            cGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCg                                                                           <  2:1266625/93‑1 (MQ=255)
            cGTCTGGCACTGATGTTGAAATTATCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTCGCGATATTCCGGGCAGGGCATCATGCCTCCg                                                                           >  2:5264228/1‑93 (MQ=255)
             gTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCgg                                                                          >  1:2969966/1‑93 (MQ=255)
             gTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCgg                                                                          >  1:3415689/1‑93 (MQ=255)
              tCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGc                                                                         >  1:889318/1‑93 (MQ=255)
                tGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGACTGCGGCaa                                                                       >  1:82140/1‑93 (MQ=255)
                 ggCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAAt                                                                      <  1:5494915/93‑1 (MQ=255)
                  gCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATg                                                                     <  2:4772874/93‑1 (MQ=255)
                   cACTGATGTTTATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATgg                                                                    <  2:1494909/93‑1 (MQ=255)
                   cACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATgg                                                                    >  1:6417683/1‑93 (MQ=255)
                   cACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATgg                                                                    <  1:3488294/93‑1 (MQ=255)
                   cACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATgg                                                                    <  2:3165682/93‑1 (MQ=255)
                   cACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATgg                                                                    <  1:4040244/93‑1 (MQ=255)
                    aCTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGc                                                                   >  2:5407717/1‑93 (MQ=255)
                    aCTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGc                                                                   <  2:824418/93‑1 (MQ=255)
                    aCTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGc                                                                   >  1:2878963/1‑93 (MQ=255)
                     cTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCg                                                                  <  1:4403968/93‑1 (MQ=255)
                     cTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCg                                                                  >  1:1605830/1‑93 (MQ=255)
                      tGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGt                                                                 >  2:6234132/1‑93 (MQ=255)
                       gATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTg                                                                >  1:5138308/1‑93 (MQ=255)
                       gATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTg                                                                <  1:3924297/93‑1 (MQ=255)
                         tGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGc                                                              <  2:4269099/93‑1 (MQ=255)
                         tGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGc                                                              <  1:4016907/93‑1 (MQ=255)
                           ttGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTc                                                            <  1:985555/93‑1 (MQ=255)
                            tGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCg                                                           <  2:4506352/93‑1 (MQ=255)
                             gATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCgg                                                          <  1:2728919/93‑1 (MQ=255)
                               tatTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGtt                                                        <  2:2703114/93‑1 (MQ=255)
                               tatTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGtt                                                        >  1:1677832/1‑93 (MQ=255)
                               tatTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGtt                                                        <  1:2860344/93‑1 (MQ=255)
                                atTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGttt                                                       <  1:3967626/93‑1 (MQ=255)
                                 ttGTCGCGACCGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTa                                                      <  2:2323975/93‑1 (MQ=255)
                                 ttGTCGCGAATGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTa                                                      >  1:4597855/1‑93 (MQ=255)
                                 ttGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTa                                                      <  1:5755245/93‑1 (MQ=255)
                                  tGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTAc                                                     >  2:589294/1‑93 (MQ=255)
                                    tCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGa                                                   <  2:3772634/93‑1 (MQ=255)
                                      gcgAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAat                                                 <  2:77819/93‑1 (MQ=255)
                                       cgAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAata                                                >  2:4391496/1‑93 (MQ=255)
                                       cgAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAata                                                <  1:1408429/93‑1 (MQ=255)
                                       cgAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAata                                                <  1:4888077/93‑1 (MQ=255)
                                        gAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAatat                                               <  2:3981822/93‑1 (MQ=255)
                                        gAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGCGCAAGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAatat                                               >  1:5531854/1‑93 (MQ=255)
                                         aaCGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATatc                                              >  1:5722855/1‑93 (MQ=255)
                                           cGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATatcga                                            <  2:3693014/93‑1 (MQ=255)
                                           cGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATatcga                                            <  1:1340171/93‑1 (MQ=255)
                                             gAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATatcgatc                                          <  1:5390806/93‑1 (MQ=255)
                                               gTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCgg                                        >  2:3494108/1‑93 (MQ=255)
                                                tGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGc                                       <  2:163604/93‑1 (MQ=255)
                                                tGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGc                                       <  1:2375323/93‑1 (MQ=255)
                                                   aCGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGt                                    <  1:1939720/93‑1 (MQ=255)
                                                    cGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGtt                                   <  1:2133890/93‑1 (MQ=255)
                                                    cGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGtt                                   >  1:2269258/1‑93 (MQ=255)
                                                     gggAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTg                                  <  1:2063005/93‑1 (MQ=255)
                                                      ggAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTgg                                 >  2:3576276/1‑93 (MQ=255)
                                                      ggAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTgg                                 <  2:3220672/93‑1 (MQ=255)
                                                      ggAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTgg                                 <  1:1707687/93‑1 (MQ=255)
                                                       gAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCCTGCCTGCGGCAATGGCGTGGCTCGGGTTACGAATATCGATCGGCTGtttgg                                >  2:260765/1‑90 (MQ=255)
                                                       gAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGt                                >  2:2866469/1‑93 (MQ=255)
                                                         ataatGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCg                              >  1:3152221/1‑93 (MQ=255)
                                                          taatGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGa                             <  2:6321607/93‑1 (MQ=255)
                                                             tGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGatat                          <  1:1893876/93‑1 (MQ=255)
                                                             tGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGatat                          >  2:4718729/1‑93 (MQ=255)
                                                             tGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGatat                          >  1:3012028/1‑93 (MQ=255)
                                                               ccTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCCGCTGTTGGTCGATATaa                        >  1:3302821/1‑93 (MQ=255)
                                                                cTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATaaa                       <  1:5102267/93‑1 (MQ=255)
                                                                  tCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATAAAAAcc                     <  2:5077317/93‑1 (MQ=255)
                                                                   ccGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCt                    <  2:2499862/93‑1 (MQ=255)
                                                                    cGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTg                   <  1:5236893/93‑1 (MQ=255)
                                                                     gCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGa                  <  1:1784891/93‑1 (MQ=255)
                                                                     gCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGa                  >  1:5901297/1‑93 (MQ=255)
                                                                     gCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGa                  <  1:4135351/93‑1 (MQ=255)
                                                                      cTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCTATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGAc                 <  2:5746612/93‑1 (MQ=255)
                                                                      cTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGAc                 >  2:2230544/1‑93 (MQ=255)
                                                                         tGCGATCTCCCGGGCAGCGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACcgg              <  2:2276307/93‑1 (MQ=255)
                                                                            gATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACcggcgg           <  1:702741/93‑1 (MQ=255)
                                                                             aTCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACcggcggg          >  1:252012/1‑92 (MQ=255)
                                                                             aTCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGt          <  1:5790166/93‑1 (MQ=255)
                                                                             aTCTTCCGGGAAGGGCATAATGGCTGCGGCAATGGCGTGGCTCGGCTTACGAATATCGATAGGCTGTTGGTCGATATCAACCTGAGCGGCGGt          >  2:3434719/1‑93 (MQ=255)
                                                                              tCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTg         >  2:5904453/1‑93 (MQ=255)
                                                                              tCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTg         >  1:4962983/1‑93 (MQ=255)
                                                                                  ccGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGAttt     <  2:2932980/93‑1 (MQ=255)
                                                                                   cGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTg    <  2:1182845/93‑1 (MQ=255)
                                                                                    gggcagggcaTCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGc   <  1:5634486/93‑1 (MQ=255)
                                                                                     ggCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCg  >  1:1011582/1‑93 (MQ=255)
                                                                                     ggCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGGGATTTGCg  >  1:380269/1‑93 (MQ=255)
                                                                                          |                                                                                       
AGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCG  >  NC_000913/1981999‑1982176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCG  >  NC_000913/1981996‑1982181
                                                                                             |                                                                                            
CCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGG                                                                                              <  SRR4302537.403241/94‑1 (MQ=60)
 CGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGG                                                                                             >  SRR4302537.4527357/1‑94 (MQ=60)
   AGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCA                                                                                           <  SRR4302537.1521965/94‑1 (MQ=60)
     CACATGTTTACGTCTGGCACTGATGTTTATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGCGCAGCGCATC                                                                                         >  SRR4302537.2141375/1‑94 (MQ=60)
     CACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGTAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATC                                                                                         >  SRR4302537.3480670/1‑94 (MQ=60)
     CACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATC                                                                                         >  SRR4302537.2101293/1‑94 (MQ=60)
        ATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATG                                                                                      <  SRR4302537.854328/94‑1 (MQ=60)
          GTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCC                                                                                    >  SRR4302537.5386262/1‑94 (MQ=60)
           TTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCT                                                                                   <  SRR4302537.2597938/94‑1 (MQ=60)
             TACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGC                                                                                 >  SRR4302537.1693685/1‑94 (MQ=60)
              ACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCG                                                                                <  SRR4302537.5451879/94‑1 (MQ=60)
              ACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCG                                                                                >  SRR4302537.3313621/1‑94 (MQ=60)
               CGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGG                                                                               >  SRR4302537.2990785/1‑94 (MQ=60)
               CGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGG                                                                               >  SRR4302537.3439874/1‑94 (MQ=60)
               CGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGG                                                                               <  SRR4302537.1627460/94‑1 (MQ=60)
                GTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGC                                                                              >  SRR4302537.895434/1‑94 (MQ=60)
                  CTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGACTGCGGCAA                                                                            >  SRR4302537.82742/1‑94 (MQ=60)
                   TGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAAT                                                                           <  SRR4302537.734314/94‑1 (MQ=60)
                    GGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATG                                                                          <  SRR4302537.5532429/94‑1 (MQ=60)
                    GGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATG                                                                          >  SRR4302537.3042574/1‑94 (MQ=60)
                     GCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGG                                                                         >  SRR4302537.6461322/1‑94 (MQ=60)
                      CACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGC                                                                        <  SRR4302537.3512965/94‑1 (MQ=60)
                      CACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGC                                                                        >  SRR4302537.2899162/1‑94 (MQ=60)
                      CACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGC                                                                        <  SRR4302537.4068507/94‑1 (MQ=60)
                       ACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCG                                                                       >  SRR4302537.5877364/1‑94 (MQ=60)
                       ACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCG                                                                       <  SRR4302537.3538923/94‑1 (MQ=60)
                       ACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCG                                                                       >  SRR4302537.5560792/1‑94 (MQ=60)
                       ACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCG                                                                       >  SRR4302537.1617060/1‑94 (MQ=60)
                       ACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCG                                                                       <  SRR4302537.2593961/94‑1 (MQ=60)
                        CTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCCATGGCGT                                                                      >  SRR4302537.2082590/1‑94 (MQ=60)
                        CTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGT                                                                      <  SRR4302537.4434358/94‑1 (MQ=60)
                         TGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTG                                                                     >  SRR4302537.332379/1‑94 (MQ=60)
                         TGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTG                                                                     >  SRR4302537.5173715/1‑94 (MQ=60)
                          GATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGG                                                                    <  SRR4302537.3951716/94‑1 (MQ=60)
                            TGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCT                                                                  <  SRR4302537.4045029/94‑1 (MQ=60)
                            TGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCT                                                                  <  SRR4302537.2903710/94‑1 (MQ=60)
                            TGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCT                                                                  <  SRR4302537.4067216/94‑1 (MQ=60)
                             GTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTC                                                                 >  SRR4302537.1914815/1‑94 (MQ=60)
                             GTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTC                                                                 <  SRR4302537.3838978/94‑1 (MQ=60)
                              TTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCG                                                                <  SRR4302537.992359/94‑1 (MQ=60)
                                GATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGT                                                              <  SRR4302537.2747972/94‑1 (MQ=60)
                                 ATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTT                                                             >  SRR4302537.1822432/1‑94 (MQ=60)
                                 ATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTT                                                             >  SRR4302537.1689578/1‑94 (MQ=60)
                                 ATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTT                                                             <  SRR4302537.959784/94‑1 (MQ=60)
                                  TATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTT                                                            <  SRR4302537.2880400/94‑1 (MQ=60)
                                   ATTGTCGCGGACGGAGTGCACGGGACTAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGAATCATGCCTGCGGCAATGGCGTGGCTCGGTTTA                                                           <  SRR4302537.3995386/94‑1 (MQ=60)
                                   ATTGTCGCGAATGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTA                                                           >  SRR4302537.4629676/1‑94 (MQ=60)
                                   ATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTA                                                           <  SRR4302537.3995389/94‑1 (MQ=60)
                                    TTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTAC                                                          <  SRR4302537.5794661/94‑1 (MQ=60)
                                     TGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACG                                                         <  SRR4302537.5163131/94‑1 (MQ=60)
                                          CGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATAT                                                    >  SRR4302537.5793982/1‑94 (MQ=60)
                                          CGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATAT                                                    <  SRR4302537.5337218/94‑1 (MQ=60)
                                          CGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATAT                                                    <  SRR4302537.4921830/94‑1 (MQ=60)
                                          CGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATAT                                                    <  SRR4302537.3400900/94‑1 (MQ=60)
                                          CGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATAT                                                    <  SRR4302537.1418239/94‑1 (MQ=60)
                                          CGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGCGCAAGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATAT                                                    >  SRR4302537.5569616/1‑94 (MQ=60)
                                           GAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATC                                                   >  SRR4302537.5762027/1‑94 (MQ=60)
                                           GAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATC                                                   >  SRR4302537.1379856/1‑94 (MQ=60)
                                            AACGGGGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCG                                                  >  SRR4302537.5802467/1‑94 (MQ=60)
                                              CGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGAT                                                >  SRR4302537.4323544/1‑94 (MQ=60)
                                              CGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGAT                                                <  SRR4302537.1349504/94‑1 (MQ=60)
                                              CGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGAT                                                <  SRR4302537.3444719/94‑1 (MQ=60)
                                                GAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCG                                              <  SRR4302537.2742982/94‑1 (MQ=60)
                                                GAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCG                                              <  SRR4302537.1093003/94‑1 (MQ=60)
                                                GAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCG                                              <  SRR4302537.5427633/94‑1 (MQ=60)
                                                 AGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGG                                             <  SRR4302537.3240092/94‑1 (MQ=60)
                                                   TGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCT                                           <  SRR4302537.2392060/94‑1 (MQ=60)
                                                     CACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGT                                         <  SRR4302537.1780981/94‑1 (MQ=60)
                                                      ACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTT                                        <  SRR4302537.1953210/94‑1 (MQ=60)
                                                      ACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTT                                        <  SRR4302537.5235644/94‑1 (MQ=60)
                                                      ACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTT                                        >  SRR4302537.4096324/1‑94 (MQ=60)
                                                      ACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTT                                        <  SRR4302537.4020898/94‑1 (MQ=60)
                                                      ACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTT                                        >  SRR4302537.2285286/1‑94 (MQ=60)
                                                       CGGGAATAATGTCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCGCGGTTTACGAATATCGAGCGGGTGTTG                                       >  SRR4302537.2419112/1‑94 (MQ=60)
                                                       CGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTG                                       <  SRR4302537.2148911/94‑1 (MQ=60)
                                                       CGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTG                                       <  SRR4302537.2917765/94‑1 (MQ=60)
                                                        GGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGG                                      <  SRR4302537.2077492/94‑1 (MQ=60)
                                                         GGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGT                                     <  SRR4302537.1719623/94‑1 (MQ=60)
                                                          GAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTC                                    <  SRR4302537.2248638/94‑1 (MQ=60)
                                                          GAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTC                                    >  SRR4302537.6219905/1‑94 (MQ=60)
                                                           AATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCG                                   >  SRR4302537.3174355/1‑94 (MQ=60)
                                                            ATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGA                                  >  SRR4302537.2046375/1‑94 (MQ=60)
                                                            ATAACTCCTTCCGCTTTGCGATCTTCCGTGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGA                                  <  SRR4302537.2604123/94‑1 (MQ=60)
                                                             TAATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGAT                                 >  SRR4302537.5633882/1‑94 (MQ=60)
                                                              AATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATA                                <  SRR4302537.3964563/94‑1 (MQ=60)
                                                              AATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATA                                <  SRR4302537.1561634/94‑1 (MQ=60)
                                                              AATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGGTTACGAATATCGATCGGCTGTTGGTCGATA                                >  SRR4302537.620046/1‑94 (MQ=60)
                                                               ATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATAT                               <  SRR4302537.279442/94‑1 (MQ=60)
                                                               ATGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATAT                               >  SRR4302537.3033028/1‑94 (MQ=60)
                                                                TGCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATA                              <  SRR4302537.1907034/94‑1 (MQ=60)
                                                                 GCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAA                             <  SRR4302537.2059031/94‑1 (MQ=60)
                                                                 GCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAA                             >  SRR4302537.6467079/1‑94 (MQ=60)
                                                                 GCCTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCCATATAA                             >  SRR4302537.2884927/1‑94 (MQ=60)
                                                                 GCCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCCGCTGTTGGTCGATATAA                             >  SRR4302537.3326170/1‑94 (MQ=60)
                                                                   CTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAAC                           <  SRR4302537.5137429/94‑1 (MQ=60)
                                                                   CTTCCGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAAC                           >  SRR4302537.4509344/1‑94 (MQ=60)
                                                                       CGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGA                       >  SRR4302537.5941790/1‑94 (MQ=60)
                                                                       CGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGA                       <  SRR4302537.5272924/94‑1 (MQ=60)
                                                                       CGCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGGCGATATAAACCTGA                       >  SRR4302537.2991239/1‑94 (MQ=60)
                                                                        GCTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGAC                      <  SRR4302537.1797337/94‑1 (MQ=60)
                                                                        GCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGAC                      <  SRR4302537.4164203/94‑1 (MQ=60)
                                                                         CTTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACC                     >  SRR4302537.4982356/1‑94 (MQ=60)
                                                                          TTTGCGATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCG                    <  SRR4302537.4764913/94‑1 (MQ=60)
                                                                              CGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGG                >  SRR4302537.348164/1‑94 (MQ=60)
                                                                               GATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGT               <  SRR4302537.5689026/94‑1 (MQ=60)
                                                                               GATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGT               <  SRR4302537.707553/94‑1 (MQ=60)
                                                                               GATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGG               >  SRR4302537.253803/1‑94 (MQ=60)
                                                                                ATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTG              <  SRR4302537.517624/94‑1 (MQ=60)
                                                                                ATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTG              <  SRR4302537.5829868/94‑1 (MQ=60)
                                                                                ATCTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTG              >  SRR4302537.4997193/1‑94 (MQ=60)
                                                                                  CTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTCCGAATATCGATCGGCTGTTGCTCGATCTAAACCTGAGCGGCGGTGAT            >  SRR4302537.61968/1‑94 (MQ=60)
                                                                                  CTTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGAT            <  SRR4302537.2365454/94‑1 (MQ=60)
                                                                                   TTCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATT           <  SRR4302537.5055086/94‑1 (MQ=60)
                                                                                    TCCGGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTT          >  SRR4302537.1451244/1‑94 (MQ=60)
                                                                                     CCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTG         <  SRR4302537.5393895/94‑1 (MQ=60)
                                                                                       GGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCG       <  SRR4302537.5673043/94‑1 (MQ=60)
                                                                                       GGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCG       >  SRR4302537.1018555/1‑94 (MQ=60)
                                                                                       GGGCAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGGGATTTGCG       >  SRR4302537.382904/1‑94 (MQ=60)
                                                                                          CAGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGCTATAAACCTcacccgcggggattttggtgc    >  SRR4302537.1282455/1‑73 (MQ=60)
                                                                                           AGGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCC   >  SRR4302537.2730589/1‑94 (MQ=60)
                                                                                            GGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCG  >  SRR4302537.6472861/1‑94 (MQ=60)
                                                                                            GGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCG  <  SRR4302537.2296527/94‑1 (MQ=60)
                                                                                            GGGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCG  <  SRR4302537.2578953/94‑1 (MQ=60)
                                                                                             |                                                                                            
CCGAGCACATGTTTACGTCTGGCACTGATGTTGATATTGTCGCGAACGGAGTGCACGGGAATAATGCCTTCCGCTTTGCGATCTTCCGGGCAGAGCATCATGCCTGCGGCAATGGCGTGGCTCGGTTTACGAATATCGATCGGCTGTTGGTCGATATAAACCTGACCGGCGGTGATTTGCGTCCCG  >  NC_000913/1981996‑1982181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑