Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 647 270.1 21258240 98.4% 20918108 94.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATG  >  NC_000913/1985155‑1985338
                                                                                          |                                                                                             
GTTAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGT                                                                                            >  SRR4302545.96821/1‑94 (MQ=60)
GTTAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGT                                                                                            >  SRR4302545.2435895/1‑94 (MQ=60)
 TTAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTT                                                                                           >  SRR4302545.2247598/1‑94 (MQ=60)
  TAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTG                                                                                          <  SRR4302545.6445318/94‑1 (MQ=60)
  TAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTG                                                                                          >  SRR4302545.210206/1‑94 (MQ=60)
  TAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTG                                                                                          <  SRR4302545.7920461/94‑1 (MQ=60)
  TAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTG                                                                                          <  SRR4302545.7920462/94‑1 (MQ=60)
  TAAAGCCATTAATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGGTCCAAAAAACCATGGAAGAATACGAGCAACGTTATAGCGCGTTG                                                                                          >  SRR4302545.4013935/1‑94 (MQ=60)
   AAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGG                                                                                         <  SRR4302545.452721/94‑1 (MQ=60)
         ATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTGCTAGTACGTGGGCACACT                                                                                   >  SRR4302545.3400051/1‑94 (MQ=60)
         ATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAAAGTTCTAGTAAGATAGCACAGT                                                                                   >  SRR4302545.6604257/1‑94 (MQ=60)
          TTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTT                                                                                  >  SRR4302545.756648/1‑94 (MQ=60)
          TTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTT                                                                                  <  SRR4302545.9377093/94‑1 (MQ=60)
           TGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTA                                                                                 <  SRR4302545.8394067/94‑1 (MQ=60)
            GATGTTCCCGGTGAAAAACTGAACTCTGTGGAAGAGCTGTTCCAAAAACCGATGGAAGAACACGAGCAACGTTCTAGTGCGTTGGCACAGTTAG                                                                                <  SRR4302545.4936135/94‑1 (MQ=60)
            GATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAG                                                                                >  SRR4302545.9193153/1‑94 (MQ=60)
            GATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAG                                                                                <  SRR4302545.4178711/94‑1 (MQ=60)
            GATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGACGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAG                                                                                <  SRR4302545.8002155/94‑1 (MQ=60)
                 TCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGAT                                                                           <  SRR4302545.7427743/94‑1 (MQ=60)
                 TCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGAT                                                                           <  SRR4302545.6092150/94‑1 (MQ=60)
                  CCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATG                                                                          >  SRR4302545.6493746/1‑94 (MQ=60)
                   CCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGA                                                                         >  SRR4302545.5081733/1‑94 (MQ=60)
                    CGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAA                                                                        <  SRR4302545.6816657/94‑1 (MQ=60)
                     GGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAG                                                                       >  SRR4302545.7742528/1‑94 (MQ=60)
                     GGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAG                                                                       >  SRR4302545.1658560/1‑94 (MQ=60)
                     GGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAG                                                                       <  SRR4302545.8293669/94‑1 (MQ=60)
                      GTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGC                                                                      <  SRR4302545.8932234/94‑1 (MQ=60)
                       TGAAAAACTGAACTCTCTGGAAGCACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACATTTAGCCGATGAAGCG                                                                     >  SRR4302545.10895347/1‑94 (MQ=60)
                       TGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCG                                                                     <  SRR4302545.10097240/94‑1 (MQ=60)
                       TGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCG                                                                     <  SRR4302545.10473947/94‑1 (MQ=60)
                       TGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCG                                                                     >  SRR4302545.4909007/1‑94 (MQ=60)
                           AAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAG                                                                 <  SRR4302545.5129275/94‑1 (MQ=60)
                           AAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAG                                                                 <  SRR4302545.4498151/94‑1 (MQ=60)
                            AACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGA                                                                >  SRR4302545.4677502/1‑94 (MQ=60)
                              CTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAAC                                                              >  SRR4302545.4187032/1‑94 (MQ=60)
                               TGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACT                                                             <  SRR4302545.4470066/94‑1 (MQ=60)
                               TGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACT                                                             <  SRR4302545.8368142/94‑1 (MQ=60)
                               TGAACCCTCTGGAAGAACTGCTACAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACT                                                             <  SRR4302545.4470065/94‑1 (MQ=60)
                               CGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACT                                                             <  SRR4302545.8368143/94‑1 (MQ=60)
                                GAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTG                                                            <  SRR4302545.1512962/94‑1 (MQ=60)
                                GAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTG                                                            >  SRR4302545.2386286/1‑94 (MQ=60)
                                  ACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGACGATGAAGCGTAAGCACTGAA                                                          >  SRR4302545.5810231/1‑94 (MQ=60)
                                   CTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAAT                                                         >  SRR4302545.1063828/1‑94 (MQ=60)
                                     CTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGA                                                       >  SRR4302545.4802160/1‑94 (MQ=60)
                                     CTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGA                                                       >  SRR4302545.10795219/1‑94 (MQ=60)
                                      TCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGAT                                                      >  SRR4302545.6969903/1‑94 (MQ=60)
                                          GAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATT                                                  >  SRR4302545.5592290/1‑94 (MQ=60)
                                          GAAGAACTGTTCAACAAAACGATGCAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATT                                                  <  SRR4302545.9809161/94‑1 (MQ=60)
                                           AAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAGGCGAAAGAACTGAATGATGATTC                                                 >  SRR4302545.7788185/1‑94 (MQ=60)
                                           AAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTC                                                 <  SRR4302545.6559048/94‑1 (MQ=60)
                                           AAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTA                                                 >  SRR4302545.4981730/1‑94 (MQ=60)
                                           AAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTCGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTC                                                 <  SRR4302545.6316425/94‑1 (MQ=60)
                                            AGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCA                                                >  SRR4302545.10237143/1‑94 (MQ=60)
                                              AACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAAC                                              >  SRR4302545.6036587/1‑94 (MQ=60)
                                               ACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACC                                             <  SRR4302545.6280965/94‑1 (MQ=60)
                                               ACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACC                                             >  SRR4302545.2268868/1‑94 (MQ=60)
                                               ACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGACGATGAAGCGAAAGAACTGACTGATGATTAAACC                                             >  SRR4302545.8070961/1‑94 (MQ=60)
                                                CTTTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCG                                            <  SRR4302545.4243426/94‑1 (MQ=60)
                                                CTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCG                                            >  SRR4302545.2200982/1‑94 (MQ=60)
                                                  ctaCCAAACAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCGGATGAAGCGAAAGAACTGAATGATGATTCAACCGTC                                          <  SRR4302545.4158275/91‑1 (MQ=60)
                                                  GTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTC                                          <  SRR4302545.3435959/94‑1 (MQ=60)
                                                   TTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCA                                         <  SRR4302545.2206857/94‑1 (MQ=60)
                                                     CCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAAT                                       <  SRR4302545.6623363/94‑1 (MQ=60)
                                                       AAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTT                                     <  SRR4302545.2061534/94‑1 (MQ=60)
                                                       AAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTT                                     <  SRR4302545.10274856/94‑1 (MQ=60)
                                                        AAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTC                                    <  SRR4302545.9733299/94‑1 (MQ=60)
                                                        AAAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTC                                    >  SRR4302545.9278253/1‑94 (MQ=60)
                                                         AAAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCC                                   <  SRR4302545.7248004/94‑1 (MQ=60)
                                                          AAACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCT                                  <  SRR4302545.3306607/94‑1 (MQ=60)
                                                          AAACAATAGAAGAATACGAGCAACATACTAGTACGTTGACAAAAATAGCCGATGAAGCGAAAGAACAGAATGATGATactaaagtcaattacct                                  <  SRR4302545.8261083/94‑18 (MQ=27)
                                                          AAAAGAGGGAAGAATACGAGCAACGTTCTAGTACGTCGGGACAGTGATCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAAGTTCCT                                  <  SRR4302545.8261082/94‑1 (MQ=60)
                                                            ACGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGC                                <  SRR4302545.421863/94‑1 (MQ=60)
                                                            ACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGC                                >  SRR4302545.5846944/1‑94 (MQ=60)
                                                             CGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCG                               >  SRR4302545.5826214/1‑94 (MQ=60)
                                                             CGATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCG                               >  SRR4302545.4572825/1‑94 (MQ=60)
                                                             CGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCG                               <  SRR4302545.8500725/94‑1 (MQ=60)
                                                             CGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCG                               >  SRR4302545.10232488/1‑94 (MQ=60)
                                                             AGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCG                               <  SRR4302545.8500724/94‑1 (MQ=60)
                                                              GATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGC                              >  SRR4302545.7509229/1‑94 (MQ=60)
                                                              GATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGC                              >  SRR4302545.3341887/1‑94 (MQ=60)
                                                               ATGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCG                             >  SRR4302545.5205831/1‑94 (MQ=60)
                                                                TGGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGA                            >  SRR4302545.1096108/1‑94 (MQ=60)
                                                                 GGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGAT                           <  SRR4302545.8042498/94‑1 (MQ=60)
                                                                 GGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGAT                           <  SRR4302545.8181222/94‑1 (MQ=60)
                                                                 GGAAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGAT                           >  SRR4302545.848343/1‑94 (MQ=60)
                                                                   AAGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCT                         >  SRR4302545.4790832/1‑94 (MQ=60)
                                                                   AAGAATACGAGCAACGTTCTAGTACGTTGTCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCT                         <  SRR4302545.5288878/94‑1 (MQ=60)
                                                                    AGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTG                        <  SRR4302545.7373833/94‑1 (MQ=60)
                                                                    AGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTG                        >  SRR4302545.490859/1‑94 (MQ=60)
                                                                    AGAATACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTG                        >  SRR4302545.3048840/1‑94 (MQ=60)
                                                                      AATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGA                      >  SRR4302545.5091634/1‑94 (MQ=60)
                                                                       ATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAA                     >  SRR4302545.8447200/1‑94 (MQ=60)
                                                                        TACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAA                    <  SRR4302545.3554450/94‑1 (MQ=60)
                                                                         ACGAGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAA                   <  SRR4302545.4743603/94‑1 (MQ=60)
                                                                           GAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAG                 >  SRR4302545.10523910/1‑94 (MQ=60)
                                                                           GAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAG                 <  SRR4302545.2445589/94‑1 (MQ=60)
                                                                            AGCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGA                >  SRR4302545.165180/1‑94 (MQ=60)
                                                                             GCAACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAA               <  SRR4302545.10169777/94‑1 (MQ=60)
                                                                             GCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAA               <  SRR4302545.666954/94‑1 (MQ=60)
                                                                              CAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAAC              >  SRR4302545.7068825/1‑94 (MQ=60)
                                                                               AACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACA             <  SRR4302545.2983728/94‑1 (MQ=60)
                                                                                ACGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAG            <  SRR4302545.5815059/94‑1 (MQ=60)
                                                                                 CGTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGC           >  SRR4302545.2731071/1‑94 (MQ=60)
                                                                                 CGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGC           >  SRR4302545.3780608/1‑94 (MQ=60)
                                                                                  GTTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCA          <  SRR4302545.6869273/94‑1 (MQ=60)
                                                                                  GTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCA          >  SRR4302545.10933206/1‑94 (MQ=60)
                                                                                  GTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCA          <  SRR4302545.8079757/94‑1 (MQ=60)
                                                                                   TTCTAGTGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAG         <  SRR4302545.9380663/94‑1 (MQ=60)
                                                                                   TTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAG         >  SRR4302545.10666729/1‑94 (MQ=60)
                                                                                      TAGTGCGTTGCGACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCAT      <  SRR4302545.4410872/94‑1 (MQ=60)
                                                                                        GTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGA    <  SRR4302545.1816266/94‑1 (MQ=60)
                                                                                        GTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGA    >  SRR4302545.2357106/1‑94 (MQ=60)
                                                                                         TGCGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGAT   >  SRR4302545.1724794/1‑94 (MQ=60)
                                                                                          ACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATG  <  SRR4302545.1801339/94‑1 (MQ=60)
                                                                                          |                                                                                             
GTTAAAGCCATTGATGTTCCCGGTGAAAAACTGAACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCTAGTACGTTGGCACAGTTAGCCGATGAAGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATG  >  NC_000913/1985155‑1985338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑