Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,144,479	A→G	P1064P (CCA→CCG)	yegE →	putative sensor‑type protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,144,479	0	A	G	98.6%	705.5 / ‑0.3	210	P1064P (CCA→CCG)	yegE	putative sensor‑type protein
Reads supporting (aligned to +/- strand): ref base A (2/1); new base G (105/102); total (107/103)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01

Only 100 of 220 total aligned reads displayed.

CAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGA  >  NC_000913/2144389‑2144568

cAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGt                                                                                         <  1:5390309/93‑1 (MQ=255)

 aaCGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTc                                                                                        >  1:1102778/1‑93 (MQ=255)

 aaCGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTc                                                                                        <  2:666986/93‑1 (MQ=255)

 aaCGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTc                                                                                        >  1:1468288/1‑93 (MQ=255)

 aaCGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTc                                                                                        >  2:179108/1‑93 (MQ=255)

  aCGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCg                                                                                       <  1:1345921/93‑1 (MQ=255)

   cGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGt                                                                                      >  1:1069698/1‑93 (MQ=255)

    gTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGtt                                                                                     >  2:5540970/1‑93 (MQ=255)

      gCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGtttt                                                                                   >  1:3271617/1‑93 (MQ=255)

       cAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTa                                                                                  <  2:6451828/93‑1 (MQ=255)

       cAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTa                                                                                  <  2:4664152/93‑1 (MQ=255)

       cAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTa                                                                                  >  2:3227049/1‑93 (MQ=255)

       cAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTa                                                                                  >  1:1003413/1‑93 (MQ=255)

        aGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTAc                                                                                 >  2:1015819/1‑93 (MQ=255)

          ggTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTAccc                                                                               >  2:2586210/1‑93 (MQ=255)

             aaTTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTa                                                                            <  1:4098993/93‑1 (MQ=255)

             aaTTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTa                                                                            <  1:3076469/93‑1 (MQ=255)

              aTTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAg                                                                           <  2:1965021/93‑1 (MQ=255)

              aTTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAg                                                                           <  1:530608/93‑1 (MQ=255)

              aTTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAg                                                                           <  2:1479322/93‑1 (MQ=255)

               tttGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGt                                                                          >  2:1198949/1‑93 (MQ=255)

                ttGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTg                                                                         <  2:1409766/93‑1 (MQ=255)

                   atggatgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATg                                                                      <  1:3725775/93‑1 (MQ=255)

                    tggatgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATgg                                                                     >  2:743671/1‑93 (MQ=255)

                    tggatgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATgg                                                                     >  2:3846849/1‑93 (MQ=255)

                     ggatgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGa                                                                    <  1:4503845/93‑1 (MQ=255)

                       gtgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATa                                                                  <  1:4742339/92‑1 (MQ=255)

                       atgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATa                                                                  <  2:3314312/93‑1 (MQ=255)

                        tgAGATGCTGATTTCGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATAc                                                                 <  2:2712358/93‑1 (MQ=255)

                        tgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATAc                                                                 >  2:5437715/1‑93 (MQ=255)

                        tgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATAc                                                                 <  2:2077431/93‑1 (MQ=255)

                        tgAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATAc                                                                 >  2:5470750/1‑93 (MQ=255)

                         gagaTGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACg                                                                >  2:4600861/1‑93 (MQ=255)

                           gaTGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGCTGGATACGCt                                                              >  2:2109661/1‑93 (MQ=255)

                           gaTGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCt                                                              >  2:4090591/1‑93 (MQ=255)

                            aTGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCtt                                                             <  2:2991081/93‑1 (MQ=255)

                             tGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCttt                                                            <  2:5828325/93‑1 (MQ=255)

                             tGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCttt                                                            >  1:1733973/1‑93 (MQ=255)

                               cTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGAATGAAAACCATCGCCGGGCCGGTAGTTTTACCCTTAGTGATGGATACGCTTTCt                                                          <  2:5188959/93‑1 (MQ=255)

                                tGATTACGATTATGCAGGGGCACGCTCAGCTACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTg                                                         <  1:5782459/93‑1 (MQ=255)

                                 gATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTgg                                                        >  1:5679269/1‑93 (MQ=255)

                                  aTTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGc                                                       >  1:923153/1‑93 (MQ=255)

                                    tACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCAt                                                     >  2:1749672/1‑93 (MQ=255)

                                     aCGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTTGCATc                                                    >  2:1149097/1‑93 (MQ=255)

                                     aCGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATc                                                    <  2:2392778/93‑1 (MQ=255)

                                      cGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCg                                                   <  1:2702934/93‑1 (MQ=255)

                                       gATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCgg                                                  >  1:3941097/1‑93 (MQ=255)

                                         ttattCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCg                                                <  1:288717/93‑1 (MQ=255)

                                          tattCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGt                                               >  1:3678570/1‑93 (MQ=255)

                                           attCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTc                                              >  2:5694661/1‑93 (MQ=255)

                                           attCAGGGGCACGCTCAGCGACTCGGGATGAAAACAATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTc                                              >  2:2043408/1‑93 (MQ=255)

                                           attCAGGGGCACGCTCAGCGACGCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTc                                              <  1:771916/93‑1 (MQ=255)

                                            ttCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCg                                             >  2:929634/1‑93 (MQ=255)

                                            ttCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCg                                             >  1:2564783/1‑93 (MQ=255)

                                            ttCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCg                                             <  1:3578697/93‑1 (MQ=255)

                                            ttCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCg                                             >  1:4965421/1‑93 (MQ=255)

                                             tCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGa                                            <  1:1607625/93‑1 (MQ=255)

                                                 gggCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGGGTCGCTCTg                                        >  2:2247743/1‑93 (MQ=255)

                                                  ggCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa                                       <  2:4883339/93‑1 (MQ=255)

                                                    cACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGAtt                                     <  1:1749221/93‑1 (MQ=255)

                                                     aCGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCATTCTGGCATCGGCGTCGATCTGAttt                                    >  2:3784669/1‑93 (MQ=255)

                                                      cGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTa                                   <  1:6355254/93‑1 (MQ=255)

                                                       gCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAt                                  >  2:5619862/1‑93 (MQ=255)

                                                       gCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAt                                  <  1:2373665/93‑1 (MQ=255)

                                                        cTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATg                                 <  1:1261751/93‑1 (MQ=255)

                                                        cTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATg                                 <  2:151815/93‑1 (MQ=255)

                                                        cTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTCGCATCGGCGTCGATCTGATTTATg                                 >  1:2000635/1‑93 (MQ=255)

                                                         tCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATgg                                >  2:3603025/1‑93 (MQ=255)

                                                          cAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggt                               <  1:1424550/93‑1 (MQ=255)

                                                              gACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg                           >  1:5052317/1‑93 (MQ=255)

                                                              gACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg                           <  2:2954750/93‑1 (MQ=255)

                                                              gACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg                           >  1:6021538/1‑93 (MQ=255)

                                                              gACTCGGGATGAAAACCATCGCCGGGCCGGTCGCTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg                           >  1:895696/1‑93 (MQ=255)

                                                               aCTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCGTCGGCGTCGATCTGATTTATggtgaggg                          >  1:6216120/1‑92 (MQ=255)

                                                               aCTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgaggt                          <  1:1142190/93‑1 (MQ=255)

                                                                 tCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgaggtga                        >  1:2328205/1‑93 (MQ=255)

                                                                 tCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgaggtga                        >  2:6219987/1‑93 (MQ=255)

                                                                 tCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgaggtga                        >  1:4571705/1‑93 (MQ=255)

                                                                   gggATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGAtt                      >  2:4965474/1‑93 (MQ=255)

                                                                   gggATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGAtt                      <  2:4395628/93‑1 (MQ=255)

                                                                    ggATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTg                     <  2:387094/93‑1 (MQ=255)

                                                                      ataaaaaCCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGcc                   <  2:1249513/90‑1 (MQ=255)

                                                                       tGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCg                  <  1:3425988/93‑1 (MQ=255)

                                                                       tGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCg                  >  1:4832070/1‑93 (MQ=255)

                                                                       tGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCg                  <  1:508838/93‑1 (MQ=255)

                                                                          aaaCCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATg               <  2:631286/93‑1 (MQ=255)

                                                                              cATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCa           >  1:320565/1‑93 (MQ=255)

                                                                               aTCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCaa          >  1:2018435/1‑93 (MQ=255)

                                                                               aTCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCaa          <  1:1883628/93‑1 (MQ=255)

                                                                                tCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAc         >  2:4047533/1‑93 (MQ=255)

                                                                                tCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAc         <  2:1044194/93‑1 (MQ=255)

                                                                                tCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCAGATGCCCAAc         >  1:831343/1‑93 (MQ=255)

                                                                                 cGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAcc        >  2:5989520/1‑93 (MQ=255)

                                                                                  gccgggccggTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCg       >  1:2238127/1‑93 (MQ=255)

                                                                                   ccGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGc      >  2:4194072/1‑93 (MQ=255)

                                                                                    cGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCt     <  1:1447710/93‑1 (MQ=255)

                                                                                    cGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCt     >  1:553687/1‑93 (MQ=255)

                                                                                    cGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCt     <  2:3727445/93‑1 (MQ=255)

                                                                                    cGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCt     <  1:3025325/93‑1 (MQ=255)

                                                                                      ggCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTgg   <  2:724241/93‑1 (MQ=255)

CAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGA  >  NC_000913/2144389‑2144568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTG  >  NC_000913/2144386‑2144572

CGCCAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCG                                                                                               >  SRR4302537.4782948/1‑94 (MQ=60)

  CCAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGT                                                                                             <  SRR4302537.4749462/94‑1 (MQ=60)

   CAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTC                                                                                            <  SRR4302537.5427134/94‑1 (MQ=60)

   CAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTC                                                                                            >  SRR4302537.1478500/1‑94 (MQ=60)

   CAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTC                                                                                            >  SRR4302537.1110397/1‑94 (MQ=60)

   CAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTC                                                                                            >  SRR4302537.930212/1‑94 (MQ=60)

     ACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGT                                                                                          <  SRR4302537.1355302/94‑1 (MQ=60)

     ACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGT                                                                                          >  SRR4302537.1077073/1‑94 (MQ=60)

       GTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTT                                                                                        >  SRR4302537.132236/1‑94 (MQ=60)

        TGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTT                                                                                       >  SRR4302537.3294706/1‑94 (MQ=60)

         GCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTA                                                                                      >  SRR4302537.1010338/1‑94 (MQ=60)

           AGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACC                                                                                    <  SRR4302537.90716/94‑1 (MQ=60)

            GGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCC                                                                                   >  SRR4302537.1729972/1‑94 (MQ=60)

                AATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAG                                                                               <  SRR4302537.3097898/94‑1 (MQ=60)

                AATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAG                                                                               <  SRR4302537.4127609/94‑1 (MQ=60)

                 ATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGT                                                                              <  SRR4302537.534246/94‑1 (MQ=60)

                  TTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACTATCGCCGGGCCGGTCGTTTTACCCTTAGTG                                                                             >  SRR4302537.2028403/1‑94 (MQ=60)

                   TTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGT                                                                            >  SRR4302537.5554503/1‑94 (MQ=60)

                      ATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGG                                                                         <  SRR4302537.3751953/94‑1 (MQ=60)

                       TGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGA                                                                        <  SRR4302537.2067166/94‑1 (MQ=60)

                        GGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGAT                                                                       <  SRR4302537.4534991/94‑1 (MQ=60)

                        GGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGAT                                                                       <  SRR4302537.4920767/94‑1 (MQ=60)

                         GATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATA                                                                      <  SRR4302537.2588082/94‑1 (MQ=60)

                          GTGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATAC                                                                     <  SRR4302537.4775113/94‑1 (MQ=60)

                          ATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATAC                                                                     >  SRR4302537.5478827/1‑94 (MQ=60)

                           TGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACG                                                                    <  SRR4302537.5410148/94‑1 (MQ=60)

                           TGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACG                                                                    <  SRR4302537.82628/94‑1 (MQ=60)

                              GATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTT                                                                 >  SRR4302537.3115200/1‑94 (MQ=60)

                               ATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTT                                                                >  SRR4302537.1746067/1‑94 (MQ=60)

                                TGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTC                                                               >  SRR4302537.1080608/1‑94 (MQ=60)

                                  CTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTG                                                             >  SRR4302537.5033807/1‑94 (MQ=60)

                                  CTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTG                                                             >  SRR4302537.3521629/1‑94 (MQ=60)

                                   TGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGG                                                            <  SRR4302537.3230950/94‑1 (MQ=60)

                                   TGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGG                                                            >  SRR4302537.6222755/1‑94 (MQ=60)

                                   TGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGG                                                            >  SRR4302537.2517174/1‑94 (MQ=60)

                                   TGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGG                                                            >  SRR4302537.5718122/1‑94 (MQ=60)

                                   TGATTACGATTATGCAGGGGCACGCTCAGCTACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGG                                                            <  SRR4302537.5822093/94‑1 (MQ=60)

                                    GATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGC                                                           >  SRR4302537.929525/1‑94 (MQ=60)

                                      TTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCAT                                                         >  SRR4302537.4599002/1‑94 (MQ=60)

                                      TTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCAT                                                         <  SRR4302537.2800136/94‑1 (MQ=60)

                                        ACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCG                                                       <  SRR4302537.1115677/94‑1 (MQ=60)

                                         CGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGG                                                      >  SRR4302537.3968653/1‑94 (MQ=60)

                                         CGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGG                                                      <  SRR4302537.1663559/94‑1 (MQ=60)

                                         CGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGG                                                      <  SRR4302537.2721810/94‑1 (MQ=60)

                                         CGATTATTCAGGGGCAAGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGG                                                      <  SRR4302537.1362071/94‑1 (MQ=60)

                                          GATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGAATCGGC                                                     >  SRR4302537.1436369/1‑94 (MQ=60)

                                           ATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCG                                                    >  SRR4302537.5846072/1‑94 (MQ=60)

                                           ATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCG                                                    >  SRR4302537.228815/1‑94 (MQ=60)

                                            TTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGT                                                   <  SRR4302537.290723/94‑1 (MQ=60)

                                            TTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGT                                                   >  SRR4302537.3704450/1‑94 (MQ=60)

                                            TTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGT                                                   >  SRR4302537.5266495/1‑94 (MQ=60)

                                             TATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTC                                                  <  SRR4302537.5786357/94‑1 (MQ=60)

                                             TATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTC                                                  <  SRR4302537.4639650/94‑1 (MQ=60)

                                             TATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTC                                                  <  SRR4302537.3659634/94‑1 (MQ=60)

                                             TATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTC                                                  >  SRR4302537.1576677/1‑94 (MQ=60)

                                              ATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCG                                                 >  SRR4302537.4999645/1‑94 (MQ=60)

                                              ATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCG                                                 >  SRR4302537.2582754/1‑94 (MQ=60)

                                              ATTCAGGGGCACGCTCAGCGACGCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCG                                                 <  SRR4302537.777207/94‑1 (MQ=60)

                                               TTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGA                                                <  SRR4302537.3603927/94‑1 (MQ=60)

                                                TCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGAT                                               <  SRR4302537.3087949/94‑1 (MQ=60)

                                                TCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGAT                                               <  SRR4302537.1618866/94‑1 (MQ=60)

                                                  AGGGGCACGCTCAGCGACTCGGGATGAAATCCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCT                                             <  SRR4302537.2950168/94‑1 (MQ=60)

                                                  AGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCT                                             <  SRR4302537.1212019/94‑1 (MQ=60)

                                                  AGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCT                                             <  SRR4302537.4424327/94‑1 (MQ=60)

                                                    GGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGA                                           >  SRR4302537.1292151/1‑94 (MQ=60)

                                                    GGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGA                                           >  SRR4302537.3937710/1‑94 (MQ=60)

                                                      GCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATT                                         <  SRR4302537.22116/94‑1 (MQ=60)

                                                       CACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTT                                        <  SRR4302537.1761419/94‑1 (MQ=60)

                                                       CACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTT                                        >  SRR4302537.5610437/1‑94 (MQ=60)

                                                         CGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAT                                      <  SRR4302537.4031008/94‑1 (MQ=60)

                                                         CGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAT                                      >  SRR4302537.3718302/1‑94 (MQ=60)

                                                         CGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAT                                      >  SRR4302537.2877285/1‑94 (MQ=60)

                                                         CGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAT                                      <  SRR4302537.6398634/94‑1 (MQ=60)

                                                          GCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATG                                     <  SRR4302537.2346823/94‑1 (MQ=60)

                                                          GCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATG                                     <  SRR4302537.2390390/94‑1 (MQ=60)

                                                          GCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTCGCATCGGCGTCGATCTGATTTATG                                     >  SRR4302537.2014547/1‑94 (MQ=60)

                                                           CTCAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGG                                    <  SRR4302537.1270526/94‑1 (MQ=60)

                                                             CAGCGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTG                                  <  SRR4302537.1434470/94‑1 (MQ=60)

                                                                CGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGG                               >  SRR4302537.5087101/1‑94 (MQ=60)

                                                                CGACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGG                               >  SRR4302537.6062904/1‑94 (MQ=60)

                                                                CGACTCGGGATGAAAACCATCGCCGGGCCGGTCGCTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGG                               >  SRR4302537.901879/1‑94 (MQ=60)

                                                                 GACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCGTCGGCGTCGATCTGATTTATGGTGAGGG                              >  SRR4302537.6258919/1‑94 (MQ=60)

                                                                  ACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTG                             <  SRR4302537.876200/94‑1 (MQ=60)

                                                                  ACTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTG                             <  SRR4302537.1150126/94‑1 (MQ=60)

                                                                   CTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGA                            >  SRR4302537.479401/1‑94 (MQ=60)

                                                                   CTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGA                            >  SRR4302537.4603353/1‑94 (MQ=60)

                                                                   CTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGA                            >  SRR4302537.1005922/1‑94 (MQ=60)

                                                                   CTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGA                            <  SRR4302537.1969998/94‑1 (MQ=60)

                                                                   CTCGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGA                            >  SRR4302537.2344625/1‑94 (MQ=60)

                                                                     CGGGATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATT                          <  SRR4302537.3448006/94‑1 (MQ=60)

                                                                         ATGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCG                      >  SRR4302537.4865437/1‑94 (MQ=60)

                                                                          TGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGA                     <  SRR4302537.512334/94‑1 (MQ=60)

                                                                          TGAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGA                     <  SRR4302537.3450238/94‑1 (MQ=60)

                                                                           GAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGAT                    >  SRR4302537.6319653/1‑94 (MQ=60)

                                                                           GAAAACCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGAT                    <  SRR4302537.4117425/94‑1 (MQ=60)

                                                                             AAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGC                  <  SRR4302537.1465974/94‑1 (MQ=60)

                                                                              ACCCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCC                 <  SRR4302537.1842705/94‑1 (MQ=60)

                                                                                CCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCA               >  SRR4302537.322787/1‑94 (MQ=60)

                                                                                CCATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCA               >  SRR4302537.6260526/1‑94 (MQ=60)

                                                                                 CATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAA              >  SRR4302537.2032507/1‑94 (MQ=60)

                                                                                  ATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAC             <  SRR4302537.1896726/94‑1 (MQ=60)

                                                                                  ATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAC             >  SRR4302537.775219/1‑94 (MQ=60)

                                                                                  ATCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCAGATGCCCAAC             >  SRR4302537.837029/1‑94 (MQ=60)

                                                                                   TCGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACC            <  SRR4302537.1069804/94‑1 (MQ=60)

                                                                                    CGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCG           >  SRR4302537.3419712/1‑94 (MQ=60)

                                                                                    CGCCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCG           >  SRR4302537.2253910/1‑94 (MQ=60)

                                                                                      CCGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCT         >  SRR4302537.557496/1‑94 (MQ=60)

                                                                                       CGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTG        <  SRR4302537.3046414/94‑1 (MQ=60)

                                                                                       CGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTG        <  SRR4302537.1457798/94‑1 (MQ=60)

                                                                                       CGGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTG        <  SRR4302537.4887390/94‑1 (MQ=60)

                                                                                        GGGCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGG       >  SRR4302537.1756942/1‑94 (MQ=60)

                                                                                          GCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAT     >  SRR4302537.6008614/1‑94 (MQ=60)

                                                                                          GCCGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAT     <  SRR4302537.5118221/94‑1 (MQ=60)

                                                                                            CGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTT   >  SRR4302537.984651/1‑94 (MQ=60)

                                                                                            CGGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTT   <  SRR4302537.5852315/94‑1 (MQ=60)

                                                                                             GGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTG  >  SRR4302537.3072037/1‑94 (MQ=60)

CGCCAACGTGCAGGGTAATTTGATGGATGAGATGCTGATTACGATTATTCAGGGGCACGCTCAGCGACTCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTG  >  NC_000913/2144386‑2144572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`