Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,197,577 T→C intergenic (+3224/‑722) metG → / → yehI methionine tRNA synthetase/putative regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,197,5770TC100.0% 684.3 / NA 199intergenic (+3224/‑722)metG/yehImethionine tRNA synthetase/putative regulator
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (127/72);  total (127/72)

Only 100 of 218 total aligned reads displayed.

ACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGTAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTC  >  NC_000913/2197487‑2197666
                                                                                          |                                                                                         
 cAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGc                                                                                        <  1:1579750/93‑1 (MQ=255)
 aaaaaGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGc                                                                                        <  2:5686057/92‑1 (MQ=255)
   aaaGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTAGAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCaa                                                                                      <  2:6380142/93‑1 (MQ=255)
   aaaGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCaa                                                                                      >  1:6317270/1‑93 (MQ=255)
    aaGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAg                                                                                     <  1:19049/93‑1 (MQ=255)
     aGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAgg                                                                                    <  2:3824738/93‑1 (MQ=255)
        gatgatGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTg                                                                                 <  2:5281840/93‑1 (MQ=255)
           gatgaAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGaa                                                                              >  2:3934269/1‑93 (MQ=255)
           gatgaAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGaa                                                                              >  2:3862349/1‑93 (MQ=255)
            atgaAACGCGGGCGAGCGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAAt                                                                             <  2:278736/93‑1 (MQ=255)
             tgaAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATc                                                                            >  1:3613474/1‑93 (MQ=255)
              gaAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATcc                                                                           >  1:4432948/1‑93 (MQ=255)
              gaAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATcc                                                                           <  1:5459152/93‑1 (MQ=255)
                aaCGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGc                                                                         >  2:1696753/1‑93 (MQ=255)
                 aCGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGcc                                                                        >  1:3900563/1‑93 (MQ=255)
                  cgcgGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCa                                                                       <  2:3235227/93‑1 (MQ=255)
                   gcgGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGccgt                                                                      >  2:5847385/1‑91 (MQ=255)
                    cgGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCAtg                                                                     <  2:1798794/93‑1 (MQ=255)
                    cgGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCAtg                                                                     <  1:1751058/93‑1 (MQ=255)
                      ggCGAACGATGCGGTTACCCGCTACAAATTACTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCAtgtg                                                                   <  1:2441343/93‑1 (MQ=255)
                       gCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGc                                                                  >  2:5984218/1‑93 (MQ=255)
                         gAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCt                                                                >  2:5054910/1‑93 (MQ=255)
                         gAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCt                                                                >  2:2653419/1‑93 (MQ=255)
                         gAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCt                                                                <  2:2164239/93‑1 (MQ=255)
                          aaCGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTg                                                               >  1:2554363/1‑93 (MQ=255)
                          aaCGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTg                                                               >  1:4687947/1‑93 (MQ=255)
                           aCGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTgc                                                              >  1:6220835/1‑93 (MQ=255)
                           aCGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTgc                                                              >  1:6349852/1‑93 (MQ=255)
                             gATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTgcgc                                                            <  2:1369871/93‑1 (MQ=255)
                              aTGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgcc                                                           >  2:3961759/1‑93 (MQ=255)
                              aTGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgcc                                                           <  1:4341929/93‑1 (MQ=255)
                              aTGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCAGCCATGTGCCTGcgcc                                                           >  2:1047238/1‑93 (MQ=255)
                               tGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgccg                                                          >  2:3513680/1‑93 (MQ=255)
                                gCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgccgc                                                         <  1:4487449/93‑1 (MQ=255)
                                   gTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgccgccgc                                                      >  1:4039841/1‑93 (MQ=255)
                                   gTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgccgccgc                                                      >  2:4196381/1‑93 (MQ=255)
                                   gTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgccgccgc                                                      >  1:1889173/1‑93 (MQ=255)
                                   gTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGcgccgccgc                                                      >  1:1179035/1‑93 (MQ=255)
                                    ttAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCt                                                     <  1:1971977/93‑1 (MQ=255)
                                     tAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTg                                                    >  1:606310/1‑93 (MQ=255)
                                     tAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTg                                                    >  1:891037/1‑93 (MQ=255)
                                      aaCCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTgg                                                   <  2:3004999/93‑1 (MQ=255)
                                      aaCCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTgg                                                   >  2:4455601/1‑93 (MQ=255)
                                        ccGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTc                                                 >  2:2255715/1‑93 (MQ=255)
                                         cGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCg                                                >  2:3465628/1‑93 (MQ=255)
                                          gCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGc                                               >  1:1126622/1‑93 (MQ=255)
                                          gCTACAAAGTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGAAGGCAGCAAGGCTGGAATCCGCCATGTGACTGCGCCGCCGCTGGTCGc                                               >  2:6310217/1‑93 (MQ=255)
                                           cTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCt                                              <  2:692482/93‑1 (MQ=255)
                                            tACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTg                                             >  2:5388251/1‑93 (MQ=255)
                                            tACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTg                                             <  1:1041388/93‑1 (MQ=255)
                                             aCAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTgg                                            >  2:702551/1‑93 (MQ=255)
                                             aCAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTgg                                            <  2:6197619/93‑1 (MQ=255)
                                              cAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGa                                           >  1:3833328/1‑93 (MQ=255)
                                              cAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGa                                           >  1:50566/1‑93 (MQ=255)
                                                aaTTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGaaa                                         >  2:4048033/1‑93 (MQ=255)
                                                aaTTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGaaa                                         >  1:4101648/1‑93 (MQ=255)
                                                  ttGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAAc                                       >  2:5574098/1‑93 (MQ=255)
                                                  ttGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAAc                                       >  2:5109139/1‑93 (MQ=255)
                                                  ttGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAAc                                       >  1:6043903/1‑93 (MQ=255)
                                                   tGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACt                                      >  1:5562468/1‑93 (MQ=255)
                                                   tGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACt                                      <  1:5644011/93‑1 (MQ=255)
                                                     cTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTc                                    >  2:6023076/1‑93 (MQ=255)
                                                      tGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTcc                                   >  1:3248757/1‑93 (MQ=255)
                                                          aaaaGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGct                               >  1:1380593/1‑93 (MQ=255)
                                                             aGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCtt                            >  2:4355057/1‑93 (MQ=255)
                                                             aGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCtt                            >  1:1014603/1‑93 (MQ=255)
                                                              gATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTc                           <  2:4592949/93‑1 (MQ=255)
                                                               aTGCGCGTACCATCCCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTcc                          <  2:3432732/93‑1 (MQ=255)
                                                                tGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCt                         >  2:4422009/1‑93 (MQ=255)
                                                                tGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCt                         <  2:1636109/93‑1 (MQ=255)
                                                                tGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCt                         >  2:5246483/1‑93 (MQ=255)
                                                                 gcgcGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTg                        <  1:4847025/93‑1 (MQ=255)
                                                                  cgcgTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTgg                       >  1:4592239/1‑93 (MQ=255)
                                                                    cgTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGtt                     >  1:4742008/1‑93 (MQ=255)
                                                                     gtcccATCCCGGCCCAGAAGGCAGCAAGCCTGAATTCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTg                    <  2:247089/90‑1 (MQ=255)
                                                                     gTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTg                    >  1:2184659/1‑93 (MQ=255)
                                                                        ccATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAAATTCCAGCTCTTCCTGGTTGAGc                 >  1:2907449/1‑93 (MQ=255)
                                                                         cATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCa                <  2:5558461/93‑1 (MQ=255)
                                                                          aTCGCCGCCCAGCAGGCAGCAGGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAt               <  1:2438519/93‑1 (MQ=255)
                                                                          aTCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAt               >  1:2418438/1‑93 (MQ=255)
                                                                          aTCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAt               >  2:6179859/1‑93 (MQ=255)
                                                                          aTCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAt               >  1:5313823/1‑93 (MQ=255)
                                                                          aTCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAt               <  1:2693462/93‑1 (MQ=255)
                                                                           tCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATc              >  1:3454255/1‑93 (MQ=255)
                                                                           tCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATc              <  1:952078/93‑1 (MQ=255)
                                                                           tCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATc              >  1:659130/1‑93 (MQ=255)
                                                                             gccgccCAGAAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCg            >  2:4822067/1‑93 (MQ=255)
                                                                              ccgccCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGc           >  1:688253/1‑93 (MQ=255)
                                                                              ccgccCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGc           <  1:2304038/93‑1 (MQ=255)
                                                                               cgccCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCt          <  1:4931074/93‑1 (MQ=255)
                                                                               cgccCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCt          >  2:2929183/1‑93 (MQ=255)
                                                                                 cccAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTgg        >  1:310507/1‑93 (MQ=255)
                                                                                  ccAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCTCTGGt       >  1:33419/1‑93 (MQ=255)
                                                                                  ccAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGt       >  1:1266469/1‑93 (MQ=255)
                                                                                  ccAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGt       <  2:1919925/93‑1 (MQ=255)
                                                                                   cagcagGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGtt      >  1:5233193/1‑93 (MQ=255)
                                                                                    agcagGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTc     >  1:1694174/1‑93 (MQ=255)
                                                                                    agcagGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTc     >  2:4204636/1‑93 (MQ=255)
                                                                                      cagGCAGCAAGGCTGGAACCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGt   <  2:1216843/93‑1 (MQ=255)
                                                                                       agGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTc  >  2:235547/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGTAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTC  >  NC_000913/2197487‑2197666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGAACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGTAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTCACT  >  NC_000913/2197484‑2197669
                                                                                             |                                                                                            
CGAACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGC                                                                                              >  SRR4302537.4841516/1‑94 (MQ=60)
  AACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAG                                                                                            >  SRR4302537.3368872/1‑94 (MQ=60)
  AACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAG                                                                                            <  SRR4302537.4477774/94‑1 (MQ=60)
    CAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCA                                                                                          <  SRR4302537.1590789/94‑1 (MQ=60)
     AAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAA                                                                                         >  SRR4302537.6360500/1‑94 (MQ=60)
       AAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGG                                                                                       <  SRR4302537.19198/94‑1 (MQ=60)
        AGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGC                                                                                      <  SRR4302537.2441100/94‑1 (MQ=60)
          GGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTG                                                                                    <  SRR4302537.1051393/94‑1 (MQ=60)
          CGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTG                                                                                    >  SRR4302537.2281864/1‑94 (MQ=60)
           GATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCTCCGCCCAGCAGGCAGCAAGGCTGG                                                                                   <  SRR4302537.2679856/94‑1 (MQ=60)
            ATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGAGCGTACCATCGCCGCCCAGTAGGCAGCCAGGCTGTA                                                                                  >  SRR4302537.1166756/1‑94 (MQ=60)
              GATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAAT                                                                                >  SRR4302537.5248422/1‑94 (MQ=60)
              GATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAAT                                                                                >  SRR4302537.2538305/1‑94 (MQ=60)
               ATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATC                                                                               >  SRR4302537.3638948/1‑94 (MQ=60)
               ATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATC                                                                               >  SRR4302537.4705374/1‑94 (MQ=60)
               ATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAACATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATC                                                                               <  SRR4302537.4583748/94‑1 (MQ=60)
                TGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCC                                                                              >  SRR4302537.4463561/1‑94 (MQ=60)
                TGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCC                                                                              <  SRR4302537.686007/94‑1 (MQ=60)
                TGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCC                                                                              >  SRR4302537.5575698/1‑94 (MQ=60)
                TGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCC                                                                              <  SRR4302537.2392188/94‑1 (MQ=60)
                 GAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCG                                                                             <  SRR4302537.5496392/94‑1 (MQ=60)
                 GAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCG                                                                             <  SRR4302537.5325500/94‑1 (MQ=60)
                  AAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCCAGGCTGGGATCCGC                                                                            >  SRR4302537.2961582/1‑94 (MQ=60)
                   AACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCC                                                                           >  SRR4302537.3927833/1‑94 (MQ=60)
                       CGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGT                                                                       <  SRR4302537.1763261/94‑1 (MQ=60)
                        GGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGGGTCCCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTG                                                                      <  SRR4302537.2540288/94‑1 (MQ=60)
                         GGCGAACGATGCGGTTACCCGCTACAAATTACTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGC                                                                     <  SRR4302537.2458530/94‑1 (MQ=60)
                           CGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCT                                                                   <  SRR4302537.5877063/94‑1 (MQ=60)
                            GAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTG                                                                  >  SRR4302537.2572276/1‑94 (MQ=60)
                            GAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTG                                                                  >  SRR4302537.4720378/1‑94 (MQ=60)
                             AACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGC                                                                 >  SRR4302537.6263660/1‑94 (MQ=60)
                             AACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGC                                                                 >  SRR4302537.838813/1‑94 (MQ=60)
                             AACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGC                                                                 >  SRR4302537.6393210/1‑94 (MQ=60)
                              ACGATGCGGTTACCCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCG                                                                <  SRR4302537.1736770/94‑1 (MQ=60)
                              ACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCG                                                                <  SRR4302537.3854168/94‑1 (MQ=60)
                                 ATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCG                                                             <  SRR4302537.4372046/94‑1 (MQ=60)
                                  TGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGC                                                            >  SRR4302537.2457833/1‑94 (MQ=60)
                                  TGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGC                                                            >  SRR4302537.1660770/1‑94 (MQ=60)
                                  TGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGC                                                            >  SRR4302537.4750328/1‑94 (MQ=60)
                                   GCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCC                                                           <  SRR4302537.4518491/94‑1 (MQ=60)
                                   GCGGTTAACCGCTACAAATCGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCC                                                           <  SRR4302537.489537/94‑1 (MQ=60)
                                    CGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCG                                                          >  SRR4302537.1984332/1‑94 (MQ=60)
                                     GGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGC                                                         <  SRR4302537.6342531/94‑1 (MQ=60)
                                     GGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGC                                                         <  SRR4302537.6089624/94‑1 (MQ=60)
                                     GGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGC                                                         >  SRR4302537.1187243/1‑94 (MQ=60)
                                     GGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGC                                                         >  SRR4302537.1902306/1‑94 (MQ=60)
                                     GGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGC                                                         >  SRR4302537.4068103/1‑94 (MQ=60)
                                       TTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTG                                                       >  SRR4302537.897174/1‑94 (MQ=60)
                                       TTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTG                                                       <  SRR4302537.1985688/94‑1 (MQ=60)
                                       TTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTG                                                       >  SRR4302537.610454/1‑94 (MQ=60)
                                         AACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGT                                                     <  SRR4302537.904075/94‑1 (MQ=60)
                                           CCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCG                                                   >  SRR4302537.130429/1‑94 (MQ=60)
                                            CGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGC                                                  >  SRR4302537.1134433/1‑94 (MQ=60)
                                            CGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGACGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGC                                                  <  SRR4302537.3252156/94‑1 (MQ=60)
                                              CTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTG                                                >  SRR4302537.3958859/1‑94 (MQ=60)
                                               TACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGG                                               <  SRR4302537.1048580/94‑1 (MQ=60)
                                                ACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGA                                              >  SRR4302537.3339971/1‑94 (MQ=60)
                                                ACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGA                                              >  SRR4302537.1915546/1‑94 (MQ=60)
                                                ACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGA                                              >  SRR4302537.3860194/1‑94 (MQ=60)
                                                ACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGA                                              >  SRR4302537.50942/1‑94 (MQ=60)
                                                 CAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAA                                             >  SRR4302537.6481713/1‑94 (MQ=60)
                                                 CAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAA                                             >  SRR4302537.5389919/1‑94 (MQ=60)
                                                  AAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAA                                            >  SRR4302537.4130286/1‑94 (MQ=60)
                                                  AAATTGCTGAAAAAAGATGCGCGTACAATCTCCGTCCAGGAGGCAGCAAGGCTGGAATCCGCAATGTGCCTGCGCCGCCGCTGGTCGCTGGAAA                                            >  SRR4302537.6274921/1‑94 (MQ=60)
                                                    ATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAAC                                          >  SRR4302537.6085416/1‑94 (MQ=60)
                                                     TTGCTGAAAAAAGATGCGCGTTCCATCGCCGCCGAGCGGGCAGCAAGGCGGGAATCCGCGATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACT                                         <  SRR4302537.2690039/94‑1 (MQ=60)
                                                     TTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACT                                         >  SRR4302537.5600479/1‑94 (MQ=60)
                                                     TTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACT                                         >  SRR4302537.6389490/1‑94 (MQ=60)
                                                      TGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTT                                        <  SRR4302537.5682638/94‑1 (MQ=60)
                                                       GCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTC                                       >  SRR4302537.280287/1‑94 (MQ=60)
                                                        CTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCC                                      >  SRR4302537.3271654/1‑94 (MQ=60)
                                                        CGGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCC                                      <  SRR4302537.1514697/94‑1 (MQ=60)
                                                         TGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCA                                     >  SRR4302537.440697/1‑94 (MQ=60)
                                                            AAAAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCT                                  >  SRR4302537.1390226/1‑94 (MQ=60)
                                                              AAAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCT                                >  SRR4302537.1035621/1‑94 (MQ=60)
                                                               AAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTT                               >  SRR4302537.1021590/1‑94 (MQ=60)
                                                               AAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTT                               >  SRR4302537.1544836/1‑94 (MQ=60)
                                                               AAGATGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTT                               >  SRR4302537.2168021/1‑94 (MQ=60)
                                                                AGATGCGCGTACCATCCCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTC                              <  SRR4302537.3867790/94‑1 (MQ=60)
                                                                  ATGCGCGTACCATCGCCGCCCAGAAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCT                            >  SRR4302537.4366394/1‑94 (MQ=60)
                                                                   TGCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCTGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTG                           <  SRR4302537.6127427/94‑1 (MQ=60)
                                                                    GCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGG                          >  SRR4302537.4624004/1‑94 (MQ=60)
                                                                    GCGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGG                          <  SRR4302537.4880473/94‑1 (MQ=60)
                                                                     CGCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGT                         >  SRR4302537.6237927/1‑94 (MQ=60)
                                                                      GCGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTT                        >  SRR4302537.4774780/1‑94 (MQ=60)
                                                                       CGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTG                       >  SRR4302537.176481/1‑94 (MQ=60)
                                                                       CGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTG                       >  SRR4302537.2200054/1‑94 (MQ=60)
                                                                       CGTACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTG                       <  SRR4302537.4106629/94‑1 (MQ=60)
                                                                        GTACCATCGCCGCCCAGCAGGCAGCAGGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGA                      <  SRR4302537.5609968/94‑1 (MQ=60)
                                                                         TCCCATCGCCGCCCAGCAGGCGGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCCGGAAAACTTCCAGCTCTTCCTGGTTGAG                     <  SRR4302537.4856311/94‑1 (MQ=60)
                                                                          ACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGC                    >  SRR4302537.5297279/1‑94 (MQ=60)
                                                                          ACCATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAAATTCCAGCTCTTCCTGGTTGAGC                    >  SRR4302537.2927874/1‑94 (MQ=60)
                                                                            CATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAT                  >  SRR4302537.3577354/1‑94 (MQ=60)
                                                                            CATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAT                  >  SRR4302537.5350318/1‑94 (MQ=60)
                                                                            CATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAT                  <  SRR4302537.4072209/94‑1 (MQ=60)
                                                                            CATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCAT                  >  SRR4302537.2435481/1‑94 (MQ=60)
                                                                             ATCGCCGCCCAGCAGGCAGCAGGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATC                 <  SRR4302537.2455697/94‑1 (MQ=60)
                                                                             ATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATC                 <  SRR4302537.4503081/94‑1 (MQ=60)
                                                                             ATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATC                 >  SRR4302537.663621/1‑94 (MQ=60)
                                                                             ATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATC                 <  SRR4302537.2712286/94‑1 (MQ=60)
                                                                             ATCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATC                 >  SRR4302537.3478684/1‑94 (MQ=60)
                                                                              TCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCC                <  SRR4302537.958658/94‑1 (MQ=60)
                                                                              TCGCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCC                >  SRR4302537.5039881/1‑94 (MQ=60)
                                                                               CCCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCG               <  SRR4302537.472612/94‑1 (MQ=60)
                                                                                GCCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGC              >  SRR4302537.692970/1‑94 (MQ=60)
                                                                                 CCGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCT             <  SRR4302537.2320300/94‑1 (MQ=60)
                                                                                  CGCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTG            <  SRR4302537.4965063/94‑1 (MQ=60)
                                                                                   GCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGG           >  SRR4302537.2084515/1‑94 (MQ=60)
                                                                                   GCCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGG           >  SRR4302537.312655/1‑94 (MQ=60)
                                                                                    CCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCTCTGGT          >  SRR4302537.33685/1‑94 (MQ=60)
                                                                                    CCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGT          >  SRR4302537.1275276/1‑94 (MQ=60)
                                                                                    CCCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGT          >  SRR4302537.1192465/1‑94 (MQ=60)
                                                                                     CCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTT         >  SRR4302537.5269190/1‑94 (MQ=60)
                                                                                     CCAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTT         >  SRR4302537.73951/1‑94 (MQ=60)
                                                                                      CAGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTC        >  SRR4302537.1706030/1‑94 (MQ=60)
                                                                                       AGCAGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCG       >  SRR4302537.3412378/1‑94 (MQ=60)
                                                                                          AGGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTCA    >  SRR4302537.2700941/1‑94 (MQ=60)
                                                                                           GGCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTCAC   >  SRR4302537.5013970/1‑94 (MQ=60)
                                                                                            GCAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTCACT  >  SRR4302537.5908417/1‑94 (MQ=60)
                                                                                             |                                                                                            
CGAACAAAAGCGATGATGAAACGCGGGCGAACGATGCGGTTAACCGCTACAAATTGCTGAAAAAAGATGCGCGTACCATCGCCGCCCAGCAGGTAGCAAGGCTGGAATCCGCCATGTGCCTGCGCCGCCGCTGGTCGCTGGAAAACTTCCAGCTCTTCCTGGTTGAGCATCCGCTGGTTCGTCACT  >  NC_000913/2197484‑2197669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑