Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,268,867 |
T→C |
V41A (GTC→GCC) |
rtn → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,268,867 | 0 | T | C | 97.4%
| 774.4
/ 6.6
| 232 | V41A (GTC→GCC) | rtn | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (4/2); new base C (112/114); total (116/116) |
| Fisher's exact test for biased strand distribution p-value = 6.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.55e-01 |
Only 100 of 237 total aligned reads displayed.
AGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGC > NC_000913/2268777‑2268956
|
aGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCATGAAGCCa < 2:6141251/93‑1 (MQ=255)
aGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGCCATAAGCACGAAGCCa > 1:2095094/1‑93 (MQ=255)
tCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAAt > 1:4649396/1‑93 (MQ=255)
tCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAAt > 2:1291697/1‑93 (MQ=255)
tCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAAt < 2:2752233/93‑1 (MQ=255)
tCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAAt > 1:2079581/1‑93 (MQ=255)
ccTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATa < 2:3436048/93‑1 (MQ=255)
ccTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATa < 1:5472872/93‑1 (MQ=255)
ccTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATa < 2:4940371/93‑1 (MQ=255)
tGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACg < 2:568200/93‑1 (MQ=255)
cTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGac < 1:4696351/93‑1 (MQ=255)
ttACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGaca > 1:6450579/1‑93 (MQ=255)
tACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGacac < 1:6320233/93‑1 (MQ=255)
ccTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGacacac > 2:1230344/1‑93 (MQ=255)
tGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTg > 2:6306389/1‑93 (MQ=255)
aTTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGAtt > 2:292550/1‑93 (MQ=255)
aTTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGAtt > 2:6210050/1‑93 (MQ=255)
gttgCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTAcc > 2:760497/1‑93 (MQ=255)
ttgCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCg > 1:1249282/1‑93 (MQ=255)
tgCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGa < 2:2170132/93‑1 (MQ=255)
gCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGAc > 2:1873325/1‑93 (MQ=255)
gCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGAc < 2:3691530/93‑1 (MQ=255)
gCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGAc < 1:6370694/93‑1 (MQ=255)
cAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACg < 2:2598064/93‑1 (MQ=255)
aGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGt > 1:5893336/1‑93 (MQ=255)
ggCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTa < 2:1201729/93‑1 (MQ=255)
ggCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTa > 1:697524/1‑93 (MQ=255)
ggCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTa < 2:2990326/93‑1 (MQ=255)
catAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACa < 1:908095/91‑1 (MQ=255)
gTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACaa > 2:5060135/1‑93 (MQ=255)
tAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACaaa > 1:4190992/1‑93 (MQ=255)
tAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACaaa < 1:2601015/93‑1 (MQ=255)
aaTGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACaaaa < 2:4388134/93‑1 (MQ=255)
aTGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAg > 1:1924533/1‑93 (MQ=255)
aTGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAg < 1:3635413/93‑1 (MQ=255)
aTGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAg > 2:2076518/1‑93 (MQ=255)
tGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGt > 2:3152504/1‑93 (MQ=255)
gATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTa < 1:5749144/93‑1 (MQ=255)
gATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTa < 2:2855024/93‑1 (MQ=255)
gATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTa < 2:2657686/93‑1 (MQ=255)
gATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTa > 2:6002668/1‑93 (MQ=255)
aTTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTAt > 1:4877769/1‑93 (MQ=255)
ttGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTAtc < 1:5617445/93‑1 (MQ=255)
ttGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTAtc > 1:2101281/1‑93 (MQ=255)
gCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTAtctc < 2:5740801/93‑1 (MQ=255)
aTACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCTCGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGAt < 1:3700782/93‑1 (MQ=255)
aTACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGAt < 2:4331388/93‑1 (MQ=255)
aTACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGAt > 2:5516327/1‑93 (MQ=255)
aTACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGAt > 2:1172135/1‑93 (MQ=255)
aTACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGAt > 1:3955514/1‑93 (MQ=255)
aCTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATAc > 2:2205964/1‑93 (MQ=255)
cTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATAcc < 2:4222306/93‑1 (MQ=255)
cTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATAcc > 2:5337616/1‑93 (MQ=255)
cTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATAcc < 2:6111711/93‑1 (MQ=255)
tGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCt > 2:5216077/1‑93 (MQ=255)
tGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCt > 1:853743/1‑93 (MQ=255)
ggTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTa < 2:2147749/93‑1 (MQ=255)
gTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAt < 2:4604914/93‑1 (MQ=255)
gTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAt < 1:5123224/93‑1 (MQ=255)
gTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAt < 2:338304/93‑1 (MQ=255)
gTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAt < 2:1636482/93‑1 (MQ=255)
tGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAtt < 1:3485217/93‑1 (MQ=255)
tGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAtt < 1:3304756/93‑1 (MQ=255)
tGAGTTGCCTGCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAtt < 1:1809803/93‑1 (MQ=255)
gAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAttt > 2:1575170/1‑93 (MQ=255)
gTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTg > 2:5047375/1‑93 (MQ=255)
gTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTg < 1:176730/93‑1 (MQ=255)
gTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTg > 2:469982/1‑93 (MQ=255)
tGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGcc > 1:2456700/1‑93 (MQ=255)
tGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACATACAAAAGCATCTCGATACCTATTTTGcc > 1:4727405/1‑93 (MQ=255)
gCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCg < 1:4022009/93‑1 (MQ=255)
gCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCg > 2:2550875/1‑93 (MQ=255)
cTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGAc < 1:2876135/93‑1 (MQ=255)
tCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCt < 1:1213917/93‑1 (MQ=255)
tCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCt < 2:3988803/93‑1 (MQ=255)
tCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCt < 2:3995265/93‑1 (MQ=255)
tttttAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGaaa > 1:4229766/1‑93 (MQ=255)
ttttAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAAt < 2:1110637/93‑1 (MQ=255)
tttAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATc > 2:1482752/1‑93 (MQ=255)
tttAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATc < 1:761406/93‑1 (MQ=255)
ttAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATcc < 2:85470/93‑1 (MQ=255)
aGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCac < 1:3151472/93‑1 (MQ=255)
ggCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCactac < 1:5626872/93‑1 (MQ=255)
ggCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCactac < 1:5568552/93‑1 (MQ=255)
ggCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGCACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCactac < 1:3795998/93‑1 (MQ=255)
cTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGa > 1:3742555/1‑93 (MQ=255)
cTGGCATAAGCACGAAGCCAAATACGACACACTGATTACAGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGa > 1:5017790/1‑93 (MQ=255)
ggCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGAcc > 1:1451450/1‑93 (MQ=255)
ggCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGAcc < 1:4519211/93‑1 (MQ=255)
cATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCgg > 2:5374985/1‑93 (MQ=255)
aTAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGc > 2:1430368/1‑93 (MQ=255)
aTAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGc < 2:4074769/93‑1 (MQ=255)
tAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCt > 2:3729880/1‑93 (MQ=255)
aGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTcc > 2:652372/1‑93 (MQ=255)
aGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTcc > 1:2900285/1‑93 (MQ=255)
aGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTcc > 2:452891/1‑93 (MQ=255)
aCGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGc > 2:3638017/1‑93 (MQ=255)
cGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGcc > 2:4901247/1‑93 (MQ=255)
aaGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAGATCCACTACTGACCGGCTCCAGCCGc > 1:6246791/1‑93 (MQ=255)
aaGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGc > 1:52002/1‑93 (MQ=255)
|
AGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGC > NC_000913/2268777‑2268956
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTAAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGCT > NC_000913/2268774‑2268957
|
GTAAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGC > SRR4302537.4160795/1‑94 (MQ=60)
TAAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCC < SRR4302537.1045910/94‑1 (MQ=60)
TAAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCC < SRR4302537.2665133/94‑1 (MQ=60)
AAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGCGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCA > SRR4302537.3323269/1‑94 (MQ=60)
AAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCA < SRR4302537.263155/94‑1 (MQ=60)
AAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCA < SRR4302537.5622384/94‑1 (MQ=60)
AAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGCCATAAGCACGAAGCCA > SRR4302537.2109870/1‑94 (MQ=60)
AGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAA > SRR4302537.4734820/1‑94 (MQ=60)
GCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAA > SRR4302537.2033557/1‑94 (MQ=60)
CTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAAT > SRR4302537.2094228/1‑94 (MQ=60)
CTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAAT > SRR4302537.4681539/1‑94 (MQ=60)
CCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATAC < SRR4302537.5510220/94‑1 (MQ=60)
CCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATAC < SRR4302537.6421709/94‑1 (MQ=60)
CCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATAC < SRR4302537.3819142/94‑1 (MQ=60)
CCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATAC < SRR4302537.6401034/94‑1 (MQ=60)
CTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACG > SRR4302537.729488/1‑94 (MQ=60)
CTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACG < SRR4302537.5600540/94‑1 (MQ=60)
CTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACG > SRR4302537.3725492/1‑94 (MQ=60)
GCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGAC < SRR4302537.3973268/94‑1 (MQ=60)
CTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACA < SRR4302537.478819/94‑1 (MQ=60)
CTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACA > SRR4302537.6494321/1‑94 (MQ=60)
CTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACA < SRR4302537.4728842/94‑1 (MQ=60)
CTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACA > SRR4302537.2682693/1‑94 (MQ=60)
TACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACA < SRR4302537.6363476/94‑1 (MQ=60)
ACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACAC > SRR4302537.873955/1‑94 (MQ=60)
CCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACT < SRR4302537.358235/94‑1 (MQ=60)
TGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGA > SRR4302537.1604174/1‑94 (MQ=60)
TGCATTGTTGCAGGCGTAATGATTGCGATACTGGGGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGA > SRR4302537.1347413/1‑94 (MQ=60)
CATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATT > SRR4302537.4620595/1‑94 (MQ=60)
TTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTAC < SRR4302537.5612816/94‑1 (MQ=60)
TGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACC > SRR4302537.1232456/1‑94 (MQ=60)
TGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACC > SRR4302537.986687/1‑94 (MQ=60)
GTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCG > SRR4302537.1257982/1‑94 (MQ=60)
TGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGAC < SRR4302537.2102949/94‑1 (MQ=60)
GCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACG < SRR4302537.6414141/94‑1 (MQ=60)
CAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGT < SRR4302537.4506951/94‑1 (MQ=60)
CAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGT > SRR4302537.5933774/1‑94 (MQ=60)
AGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTA > SRR4302537.702303/1‑94 (MQ=60)
AGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTA > SRR4302537.994972/1‑94 (MQ=60)
GCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACA < SRR4302537.2359794/94‑1 (MQ=60)
CATAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAA < SRR4302537.914370/94‑1 (MQ=60)
GTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAA > SRR4302537.4220265/1‑94 (MQ=60)
TAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAA < SRR4302537.2619202/94‑1 (MQ=60)
AATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAG > SRR4302537.1937893/1‑94 (MQ=60)
AATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAG > SRR4302537.4720875/1‑94 (MQ=60)
ATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGT < SRR4302537.3661018/94‑1 (MQ=60)
ATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGT < SRR4302537.6167189/94‑1 (MQ=60)
GATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTAT < SRR4302537.5788521/94‑1 (MQ=60)
GATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTAT > SRR4302537.4911469/1‑94 (MQ=60)
ATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATC > SRR4302537.2116101/1‑94 (MQ=60)
TTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCT < SRR4302537.5655854/94‑1 (MQ=60)
TGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTC < SRR4302537.5895733/94‑1 (MQ=60)
TGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTC < SRR4302537.5439831/94‑1 (MQ=60)
CGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGA > SRR4302537.4003815/1‑94 (MQ=60)
CGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGA > SRR4302537.5663808/1‑94 (MQ=60)
GATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGAT > SRR4302537.3983189/1‑94 (MQ=60)
ATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCTCGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATA < SRR4302537.3726815/94‑1 (MQ=60)
ATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATA > SRR4302537.809379/1‑94 (MQ=60)
ACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACC > SRR4302537.149160/1‑94 (MQ=60)
ACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACC > SRR4302537.5548320/1‑94 (MQ=60)
CTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCT > SRR4302537.859600/1‑94 (MQ=60)
TGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTA > SRR4302537.4667930/1‑94 (MQ=60)
TGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTA > SRR4302537.1798338/1‑94 (MQ=60)
GGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAT < SRR4302537.4793201/94‑1 (MQ=60)
GGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTAT < SRR4302537.2418705/94‑1 (MQ=60)
GTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATT < SRR4302537.5158533/94‑1 (MQ=60)
GTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATT < SRR4302537.4128430/94‑1 (MQ=60)
GTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATT > SRR4302537.5104459/1‑94 (MQ=60)
TGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTT < SRR4302537.3328121/94‑1 (MQ=60)
TGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTT < SRR4302537.3509867/94‑1 (MQ=60)
TGAGTTGCCTGCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTT < SRR4302537.1822422/94‑1 (MQ=60)
GAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTCCCGACGTACAAAAGTATCTCGATACCTATTTT < SRR4302537.3751203/94‑1 (MQ=60)
GTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGC < SRR4302537.177981/94‑1 (MQ=60)
TTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCC < SRR4302537.1832602/94‑1 (MQ=60)
TTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCC > SRR4302537.2473978/1‑94 (MQ=60)
TTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACATACAAAAGCATCTCGATACCTATTTTGCC > SRR4302537.4760081/1‑94 (MQ=60)
TGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCG > SRR4302537.2010254/1‑94 (MQ=60)
TGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCG > SRR4302537.2916203/1‑94 (MQ=60)
GCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGA < SRR4302537.4050169/94‑1 (MQ=60)
GCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGA < SRR4302537.366881/94‑1 (MQ=60)
CCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGAC < SRR4302537.5743002/94‑1 (MQ=60)
CTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACC < SRR4302537.2896318/94‑1 (MQ=60)
TCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTG < SRR4302537.1222363/94‑1 (MQ=60)
TCAGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTG < SRR4302537.2112357/94‑1 (MQ=60)
AGTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAA < SRR4302537.2785174/94‑1 (MQ=60)
GTTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAA > SRR4302537.4259214/1‑94 (MQ=60)
TTTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAAT > SRR4302537.3199516/1‑94 (MQ=60)
TTTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATC < SRR4302537.2983919/94‑1 (MQ=60)
TTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCC < SRR4302537.3775949/94‑1 (MQ=60)
TTTAGTGGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCC < SRR4302537.766610/94‑1 (MQ=60)
AGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACT < SRR4302537.3173605/94‑1 (MQ=60)
GGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACT < SRR4302537.5606612/94‑1 (MQ=60)
GGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACT < SRR4302537.6199628/94‑1 (MQ=60)
GGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACT < SRR4302537.5665366/94‑1 (MQ=60)
GGCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGCACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACT < SRR4302537.3822634/94‑1 (MQ=60)
GCCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTG > SRR4302537.5151635/1‑94 (MQ=60)
CCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGA > SRR4302537.3768838/1‑94 (MQ=60)
CCTGGCATAAGCACGAAGCCAAATACGACACACTGATTACAGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGA > SRR4302537.5052357/1‑94 (MQ=60)
CTGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGAC < SRR4302537.518357/94‑1 (MQ=60)
TGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACC < SRR4302537.674476/94‑1 (MQ=60)
TGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACC > SRR4302537.1461565/1‑94 (MQ=60)
TGGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACC < SRR4302537.418497/94‑1 (MQ=60)
GGCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCG < SRR4302537.4550470/94‑1 (MQ=60)
GCATAAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGT > SRR4302537.2550577/1‑94 (MQ=60)
AAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCC > SRR4302537.6341198/1‑94 (MQ=60)
AAGCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCC > SRR4302537.2920662/1‑94 (MQ=60)
GCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAG < SRR4302537.6467623/94‑1 (MQ=60)
GCACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAG > SRR4302537.5716801/1‑94 (MQ=60)
CACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGC > SRR4302537.424521/1‑94 (MQ=60)
ACGAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCC < SRR4302537.3380549/94‑1 (MQ=60)
GAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAGATCCACTACTGACCGGCTCCAGCCGC > SRR4302537.6289717/1‑94 (MQ=60)
GAAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGC > SRR4302537.52390/1‑94 (MQ=60)
AAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGCT < SRR4302537.781293/94‑1 (MQ=60)
AAGCCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGCT < SRR4302537.4973562/94‑1 (MQ=60)
|
GTAAGCTCCTGCTTACCTGCATTGTTGCAGGCGTAATGATTGCGATACTGGTGAGTTGCCTTCAGTTTTTAGTGGCCTGGCATAAGCACGAAGTCAAATACGACACACTGATTACCGACGTACAAAAGTATCTCGATACCTATTTTGCCGACCTGAAATCCACTACTGACCGGCTCCAGCCGCT > NC_000913/2268774‑2268957
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
