Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,464,214 |
T→C |
R298R (CGT→CGC) |
yfdC → |
putative transport |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,464,214 | 0 | T | C | 96.3%
| 683.3
/ 9.1
| 214 | R298R (CGT→CGC) | yfdC | putative transport |
| Reads supporting (aligned to +/- strand): ref base T (2/6); new base C (107/99); total (109/105) |
| Fisher's exact test for biased strand distribution p-value = 1.65e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 |
Only 100 of 221 total aligned reads displayed.
CACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCA > NC_000913/2464124‑2464303
|
cACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACgcgc < 1:6337181/93‑1 (MQ=255)
cACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGc < 2:2053982/93‑1 (MQ=255)
aCCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAAcgcgcg > 1:2612619/1‑93 (MQ=255)
ccTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCgg < 2:3689391/93‑1 (MQ=255)
cTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGa > 1:4907971/1‑93 (MQ=255)
tttATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGaa < 2:1075545/93‑1 (MQ=255)
tttATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGaa > 1:846787/1‑93 (MQ=255)
ttATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGaaa > 2:281243/1‑93 (MQ=255)
tATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGaaaa < 1:3713371/93‑1 (MQ=255)
tATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGaaaa < 1:3246500/93‑1 (MQ=255)
aTCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAAc > 2:2261330/1‑93 (MQ=255)
aTCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAAc < 1:2111927/93‑1 (MQ=255)
ttCGCGTTAATGAGTCATTCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACAtt > 1:5801757/1‑93 (MQ=255)
tCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTa > 1:2794401/1‑93 (MQ=255)
tCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTa < 1:3503167/93‑1 (MQ=255)
cgcgTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTaa < 1:1568880/93‑1 (MQ=255)
cgcgTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTaa < 2:3747054/93‑1 (MQ=255)
gcgTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAg < 1:2453615/93‑1 (MQ=255)
gcgTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAg > 1:1141092/1‑93 (MQ=255)
cgTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGa < 2:5412566/93‑1 (MQ=255)
ttAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGaaa > 1:2751953/1‑93 (MQ=255)
tAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGaaaa < 2:3491229/93‑1 (MQ=255)
aaTGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGaaaaa > 2:3420152/1‑93 (MQ=255)
aaTGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGaaaaa < 1:3345648/93‑1 (MQ=255)
aaTGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGaaaaa > 1:4101720/1‑93 (MQ=255)
tGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAAtt < 1:6180925/93‑1 (MQ=255)
gAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATta < 1:952752/93‑1 (MQ=255)
gAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATta < 2:4578752/93‑1 (MQ=255)
aGTCATGCACATATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATtat < 1:6405821/93‑1 (MQ=255)
aGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATtat < 1:3407869/93‑1 (MQ=255)
aGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATtat < 2:634420/93‑1 (MQ=255)
tCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATaa < 1:789227/93‑1 (MQ=255)
tCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATaa < 1:5234911/93‑1 (MQ=255)
cATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATaaa < 2:4037214/93‑1 (MQ=255)
aTGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATaaaa > 2:264732/1‑93 (MQ=255)
tGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATaaaaa > 1:3014592/1‑93 (MQ=255)
gCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAGAAGCACAACACGCGGAAAACATTAAGTAAACTTATAAacac > 2:1759678/1‑93 (MQ=255)
gCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAAc < 1:4202233/93‑1 (MQ=255)
gCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAAc > 2:4921619/1‑93 (MQ=255)
acaGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAGAACATTAAGAAAAATTATAAAAAccc < 1:732419/93‑1 (MQ=255)
caGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATTATAAAAACCCg < 2:1019973/93‑1 (MQ=255)
caGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCg < 1:318708/93‑1 (MQ=255)
caGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCg < 2:4493956/93‑1 (MQ=255)
gATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGc > 1:5438562/1‑93 (MQ=255)
aTTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGct > 1:6209126/1‑92 (MQ=255)
tCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATa > 2:2296547/1‑93 (MQ=255)
cGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATaa > 1:1031781/1‑93 (MQ=255)
tAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAAt > 2:1831464/1‑93 (MQ=255)
aaCGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATg < 2:5319277/93‑1 (MQ=255)
aCGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATgg < 1:1783640/93‑1 (MQ=255)
aCGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATgg > 2:5086505/1‑93 (MQ=255)
aCGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATgg < 2:4641499/93‑1 (MQ=255)
aCGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATgg > 2:1129671/1‑93 (MQ=255)
aCGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATgg < 1:4405645/93‑1 (MQ=255)
cGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGc < 1:1882361/93‑1 (MQ=255)
aCATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGa < 1:5769911/93‑1 (MQ=255)
cATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAg < 2:1460156/93‑1 (MQ=255)
aTGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAgg > 1:5508013/1‑93 (MQ=255)
aTGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAgg < 2:4275038/93‑1 (MQ=255)
aTGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAgg > 1:1238602/1‑93 (MQ=255)
tGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAggg > 2:699808/1‑93 (MQ=255)
gCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGttt > 2:588605/1‑93 (MQ=255)
cAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTa > 2:329858/1‑93 (MQ=255)
aaTAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTaa > 1:383962/1‑93 (MQ=255)
aTAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAg < 2:1907438/93‑1 (MQ=255)
gCGTAAAGCAGAAGCACGCCAAAAAGCAGCACGCGCGGAAAACATTAAGAAAAATTATAACAACCCGGCATAAATGGCGAGGGCTTAAGccac > 1:3068402/1‑90 (MQ=255)
cttAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATc < 2:3016976/91‑1 (MQ=255)
cGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTGAAGCAATc < 2:6306422/93‑1 (MQ=255)
gTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCg > 1:1631141/1‑93 (MQ=255)
tAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGa < 2:248550/93‑1 (MQ=255)
aaaGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAg < 2:4758028/93‑1 (MQ=255)
aaGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGc > 2:5596449/1‑93 (MQ=255)
aaGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGc < 1:4879927/93‑1 (MQ=255)
gCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCgg > 2:3530685/1‑93 (MQ=255)
gCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCgg > 1:4795033/1‑93 (MQ=255)
cAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGc < 1:1509837/93‑1 (MQ=255)
gAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAg > 2:4811864/1‑93 (MQ=255)
gAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAg > 1:5726883/1‑93 (MQ=255)
aaGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGc < 2:3865277/93‑1 (MQ=255)
aaGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGc > 2:4139607/1‑93 (MQ=255)
gCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGt < 2:1937417/93‑1 (MQ=255)
aCGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTAc < 2:2197407/93‑1 (MQ=255)
cGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACt > 1:4501961/1‑93 (MQ=255)
gCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACtt > 2:1693405/1‑93 (MQ=255)
ccAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTa > 1:468840/1‑93 (MQ=255)
cAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGGACTTAc > 1:1079948/1‑93 (MQ=255)
aaaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAcc < 2:4300576/93‑1 (MQ=255)
aaaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAcc > 1:4803001/1‑93 (MQ=255)
aaaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAcc > 1:4292864/1‑93 (MQ=255)
aaaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAcc > 1:198416/1‑93 (MQ=255)
aaaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAcc > 1:1161122/1‑93 (MQ=255)
aaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAccc > 2:2919614/1‑93 (MQ=255)
aaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAccc < 1:673010/93‑1 (MQ=255)
aaaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAccc > 1:5543288/1‑93 (MQ=255)
aaaaGCAGAACGCGCGGAAAACAATAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTGAAGGAATCGAGCGGCGGGGTACTTAccc > 2:1609682/1‑93 (MQ=255)
aaaGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAcccc > 1:3734301/1‑93 (MQ=255)
aGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGc < 1:2411286/93‑1 (MQ=255)
gAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTc < 1:4921619/93‑1 (MQ=255)
gAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTc > 1:4605524/1‑93 (MQ=255)
aaCGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTcc < 2:2408960/93‑1 (MQ=255)
|
CACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCA > NC_000913/2464124‑2464303
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGCACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCATTAG > NC_000913/2464121‑2464307
|
GGGCACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGC < SRR4302537.2621097/94‑1 (MQ=60)
CACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCG < SRR4302537.1074756/94‑1 (MQ=60)
CACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCG > SRR4302537.2630897/1‑94 (MQ=60)
CACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCG > SRR4302537.692583/1‑94 (MQ=60)
CACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCG < SRR4302537.6380494/94‑1 (MQ=60)
ACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGG < SRR4302537.458544/94‑1 (MQ=60)
CCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGA > SRR4302537.4941846/1‑94 (MQ=60)
CTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAA > SRR4302537.852587/1‑94 (MQ=60)
TTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAA > SRR4302537.6413785/1‑94 (MQ=60)
TATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAAC < SRR4302537.3269376/94‑1 (MQ=60)
TATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAAC < SRR4302537.3739472/94‑1 (MQ=60)
TATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAAC > SRR4302537.819404/1‑94 (MQ=60)
ATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTACAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACA > SRR4302537.2804971/1‑94 (MQ=60)
ATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACA > SRR4302537.6258996/1‑94 (MQ=60)
ATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACA < SRR4302537.4814336/94‑1 (MQ=60)
ATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACA < SRR4302537.194503/94‑1 (MQ=60)
ATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACA < SRR4302537.2126810/94‑1 (MQ=60)
TCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAAGAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACAT < SRR4302537.2740951/94‑1 (MQ=60)
CTTCGCGTTAATGAGTCATTCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATT > SRR4302537.5841534/1‑94 (MQ=60)
CTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATT > SRR4302537.4782123/1‑94 (MQ=60)
CTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATT > SRR4302537.904003/1‑94 (MQ=60)
CTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATT > SRR4302537.4157395/1‑94 (MQ=60)
TTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTA < SRR4302537.48380/94‑1 (MQ=60)
TTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTA > SRR4302537.2813934/1‑94 (MQ=60)
TCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAA < SRR4302537.3527951/94‑1 (MQ=60)
CGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAG < SRR4302537.1579827/94‑1 (MQ=60)
CGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAG < SRR4302537.4915565/94‑1 (MQ=60)
CGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAG > SRR4302537.1149020/1‑94 (MQ=60)
GCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGA < SRR4302537.2470877/94‑1 (MQ=60)
CGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAA > SRR4302537.3462651/1‑94 (MQ=60)
CGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAA > SRR4302537.3226404/1‑94 (MQ=60)
GTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAA > SRR4302537.2771158/1‑94 (MQ=60)
TAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAA > SRR4302537.4130360/1‑94 (MQ=60)
TAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAA > SRR4302537.1114933/1‑94 (MQ=60)
AATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAAT < SRR4302537.3369331/94‑1 (MQ=60)
AATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAAT > SRR4302537.1002206/1‑94 (MQ=60)
ATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATT > SRR4302537.3291720/1‑94 (MQ=60)
TGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTA < SRR4302537.4310685/94‑1 (MQ=60)
TGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTA < SRR4302537.4466351/94‑1 (MQ=60)
TGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTA > SRR4302537.6074846/1‑94 (MQ=60)
TGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTA < SRR4302537.6223501/94‑1 (MQ=60)
GAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATTAT < SRR4302537.959333/94‑1 (MQ=60)
AGTCATGCACATATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATA < SRR4302537.6449421/94‑1 (MQ=60)
AGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATA > SRR4302537.6459038/1‑94 (MQ=60)
AGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATA < SRR4302537.3432010/94‑1 (MQ=60)
AGTCATGCACAGATTCGTAACGACATGAGCAAGAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATA < SRR4302537.2912226/94‑1 (MQ=60)
GTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAA > SRR4302537.2045677/1‑94 (MQ=60)
TCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAA < SRR4302537.794645/94‑1 (MQ=60)
TCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAA < SRR4302537.5270926/94‑1 (MQ=60)
TCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAA < SRR4302537.4890256/94‑1 (MQ=60)
ATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAA > SRR4302537.3035609/1‑94 (MQ=60)
TGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAAC > SRR4302537.3765219/1‑94 (MQ=60)
GCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACC < SRR4302537.4231571/94‑1 (MQ=60)
CACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCC < SRR4302537.576982/94‑1 (MQ=60)
ACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAGAACATTAAGAAAAATTATAAAAACCCG < SRR4302537.737419/94‑1 (MQ=60)
CAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGG < SRR4302537.2770448/94‑1 (MQ=60)
CAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGG < SRR4302537.320916/94‑1 (MQ=60)
CAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGG < SRR4302537.1430431/94‑1 (MQ=60)
AGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGC > SRR4302537.825818/1‑94 (MQ=60)
AGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGC > SRR4302537.3209071/1‑94 (MQ=60)
AGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGC > SRR4302537.5475662/1‑94 (MQ=60)
GATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCT > SRR4302537.6251904/1‑94 (MQ=60)
TCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAA > SRR4302537.1038890/1‑94 (MQ=60)
CGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAA > SRR4302537.5644662/1‑94 (MQ=60)
GTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAAT < SRR4302537.749065/94‑1 (MQ=60)
GTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAAT < SRR4302537.1552271/94‑1 (MQ=60)
CTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAAT < SRR4302537.1638312/94‑1 (MQ=60)
ACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGC < SRR4302537.4436046/94‑1 (MQ=60)
ACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGC < SRR4302537.1796079/94‑1 (MQ=60)
CGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCG < SRR4302537.1895450/94‑1 (MQ=60)
CGACATGAGCAATAAGCGTAAAGCAGAAGCACGCAAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCG < SRR4302537.1895451/94‑1 (MQ=60)
ACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAG < SRR4302537.6280880/94‑1 (MQ=60)
ACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAG < SRR4302537.5809459/94‑1 (MQ=60)
CATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGG > SRR4302537.1247217/1‑94 (MQ=60)
CATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGG > SRR4302537.5545630/1‑94 (MQ=60)
ATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGG > SRR4302537.3539960/1‑94 (MQ=60)
ATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGG > SRR4302537.5210707/1‑94 (MQ=60)
CAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAA > SRR4302537.386620/1‑94 (MQ=60)
AATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAG < SRR4302537.1788503/94‑1 (MQ=60)
ATAAGCGTAAAGCAGAAGCACGCGAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGC < SRR4302537.556965/94‑1 (MQ=60)
ATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGC < SRR4302537.1292310/94‑1 (MQ=60)
ATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGC > SRR4302537.2234215/1‑94 (MQ=60)
ATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGC < SRR4302537.4711893/94‑1 (MQ=60)
AGCGTAAAGCAGAAGCACGCCAAAAAGCAGCACGCGCGGAAAACATTAAGAAAAATTATAACAACCCGGCATAAATGGCGAGGGCTTAAGCcac > SRR4302537.3089783/1‑91 (MQ=60)
AGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAAT > SRR4302537.3039081/1‑94 (MQ=60)
GCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATC > SRR4302537.3247024/1‑94 (MQ=60)
GCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATC < SRR4302537.2569830/94‑1 (MQ=60)
GCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATC < SRR4302537.3369922/94‑1 (MQ=60)
CGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCG > SRR4302537.1642567/1‑94 (MQ=60)
CGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCG < SRR4302537.4262545/94‑1 (MQ=60)
CGTAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCG < SRR4302537.5271955/94‑1 (MQ=60)
TAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAG > SRR4302537.5614153/1‑94 (MQ=60)
TAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAG < SRR4302537.5530213/94‑1 (MQ=60)
TAAAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAG > SRR4302537.1208799/1‑94 (MQ=60)
AAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCG < SRR4302537.4030343/94‑1 (MQ=60)
AAGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCG < SRR4302537.4913637/94‑1 (MQ=60)
AGCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGG > SRR4302537.4828123/1‑94 (MQ=60)
GCAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGC > SRR4302537.1867123/1‑94 (MQ=60)
CAGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCA < SRR4302537.1520394/94‑1 (MQ=60)
AGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAG > SRR4302537.3743290/1‑94 (MQ=60)
AGAAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAG > SRR4302537.5766084/1‑94 (MQ=60)
AAGCACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCG < SRR4302537.5812061/94‑1 (MQ=60)
ACGCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACT > SRR4302537.4533093/1‑94 (MQ=60)
GCCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTA > SRR4302537.472055/1‑94 (MQ=60)
GCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTAC < SRR4302537.2468579/94‑1 (MQ=60)
CCAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGGACTTAC > SRR4302537.1087403/1‑94 (MQ=60)
CAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACC > SRR4302537.1169199/1‑94 (MQ=60)
CAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACC > SRR4302537.4836134/1‑94 (MQ=60)
CAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACC > SRR4302537.4322702/1‑94 (MQ=60)
CAAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACC > SRR4302537.199832/1‑94 (MQ=60)
AAAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCC > SRR4302537.5581138/1‑94 (MQ=60)
AAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCC < SRR4302537.677617/94‑1 (MQ=60)
AAAAGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCC > SRR4302537.3760531/1‑94 (MQ=60)
AGCAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCA < SRR4302537.2428262/94‑1 (MQ=60)
CAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACT > SRR4302537.6251881/1‑94 (MQ=60)
CAGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACT < SRR4302537.4953282/94‑1 (MQ=60)
AGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTC > SRR4302537.4637413/1‑94 (MQ=60)
AGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTC > SRR4302537.439406/1‑94 (MQ=60)
AGAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTC > SRR4302537.1161975/1‑94 (MQ=60)
GAACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCC < SRR4302537.4955566/94‑1 (MQ=60)
AACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCA < SRR4302537.3536516/94‑1 (MQ=60)
ACGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCAT < SRR4302537.5090961/94‑1 (MQ=60)
CGCGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCATT < SRR4302537.795004/94‑1 (MQ=60)
CGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCATTAG < SRR4302537.1226272/94‑1 (MQ=60)
CGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCATTAG > SRR4302537.872259/1‑94 (MQ=60)
|
CGGCACCTTTATCTTCGCGTTAATGAGTCATGCACAGATTCGTAACGACATGAGCAATAAGCGTAAAGCAGAAGCACGCCAAAAAGCAGAACGTGCGGAAAACATTAAGAAAAATTATAAAAACCCGGCATAAATGGCGAGGGTTTAAGCAATCGAGCGGCAGCGTACTTACCCCGCACTCCATTAG > NC_000913/2464121‑2464307
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
