Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,479,298 |
T→C |
Q300R (CAG→CGG) |
emrY ← |
multidrug resistance protein Y |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,479,298 | 0 | T | C | 97.2%
| 707.6
/ 7.0
| 213 | Q300R (CAG→CGG) | emrY | multidrug resistance protein Y |
| Reads supporting (aligned to +/- strand): ref base T (4/2); new base C (91/116); total (95/118) |
| Fisher's exact test for biased strand distribution p-value = 4.11e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.05e-01 |
Only 100 of 219 total aligned reads displayed.
CGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGA > NC_000913/2479208‑2479386
|
cGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCgg > 2:3412325/1‑93 (MQ=255)
tCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAg > 2:3859385/1‑93 (MQ=255)
ccTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGt < 1:4745867/93‑1 (MQ=255)
ccTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGt > 1:2906457/1‑93 (MQ=255)
ccTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGt < 2:3964435/93‑1 (MQ=255)
cTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTa > 2:4834646/1‑93 (MQ=255)
cTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTa > 1:590864/1‑93 (MQ=255)
tATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTaa > 1:6139795/1‑93 (MQ=255)
tATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTaa > 2:5777288/1‑93 (MQ=255)
aTCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAAc < 2:6039791/93‑1 (MQ=255)
tCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACt < 2:1854264/93‑1 (MQ=255)
tCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACt > 2:2458746/1‑93 (MQ=255)
tCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACt < 1:3097597/93‑1 (MQ=255)
aaaGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGc < 1:2571205/93‑1 (MQ=255)
aaaGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGc < 1:3064892/93‑1 (MQ=255)
aGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCgg > 1:2017120/1‑93 (MQ=255)
aGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCgg > 1:6415735/1‑93 (MQ=255)
aGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCgg > 2:2736367/1‑93 (MQ=255)
ggTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGc > 2:3805296/1‑93 (MQ=255)
gAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATa > 1:408689/1‑93 (MQ=255)
aaaTTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATaa < 1:4623410/93‑1 (MQ=255)
aaaTTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATaa > 1:1479293/1‑93 (MQ=255)
aaTTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCAATCGCTTCCCGGGGTAACTGCGGCATAAg > 1:1982505/1‑93 (MQ=255)
ttAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGa > 1:2994506/1‑93 (MQ=255)
ttAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGa < 1:3540065/93‑1 (MQ=255)
ttAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGa < 1:1036188/93‑1 (MQ=255)
tAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGAc < 2:3135841/93‑1 (MQ=255)
aaTAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACg > 1:1846329/1‑93 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt < 2:2958828/93‑1 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt < 2:3501419/93‑1 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt < 2:3570035/93‑1 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt < 1:608960/93‑1 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt < 2:6465207/93‑1 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt > 1:4474576/1‑93 (MQ=255)
tAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAt < 1:155233/93‑1 (MQ=255)
gTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCg < 1:4021373/93‑1 (MQ=255)
tGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGc < 2:1463086/93‑1 (MQ=255)
tGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGc > 1:5337988/1‑93 (MQ=255)
tGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGc < 2:5102271/93‑1 (MQ=255)
gggCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGc < 1:3377851/92‑1 (MQ=255)
ggCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCt < 2:375177/93‑1 (MQ=255)
gCATGATGCCGATGGGTGCATAACCAAGTCCGGCCCATTTCCCATTATACCCCATCGTTTCCCGGATAAACGTGGGCTTAAGGCGGATCGccc > 2:4243874/1‑91 (MQ=255)
gCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTc > 2:3396426/1‑93 (MQ=255)
cATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTcc < 1:6297642/93‑1 (MQ=255)
tgatgCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCag > 2:1515279/1‑93 (MQ=255)
gatgCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCagg > 2:1328544/1‑92 (MQ=255)
gatgCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCaga > 2:6261755/1‑93 (MQ=255)
gatgCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCaga > 1:5632928/1‑93 (MQ=255)
tgCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGt < 1:4982587/93‑1 (MQ=255)
tgCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGt < 1:5481832/93‑1 (MQ=255)
gCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTa > 2:5531589/1‑93 (MQ=255)
gATGGGCGTATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTaaaa > 1:1216986/1‑93 (MQ=255)
gATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTGTACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTaaaa < 2:1070612/93‑1 (MQ=255)
aTGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAaaat > 2:4427756/1‑93 (MQ=255)
aTGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAaaat > 2:5625516/1‑93 (MQ=255)
tGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAaaata > 2:6015503/1‑93 (MQ=255)
gggCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAaaataa < 1:3828827/93‑1 (MQ=255)
gcgcATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAaaataaat < 1:2247449/93‑1 (MQ=255)
cgcATAAGCAAGTCCGGCCCATATCGCATTATGCCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAaataaata < 1:3002327/93‑1 (MQ=255)
cgcATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAaataaata < 1:2779367/93‑1 (MQ=255)
gcATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAc < 2:3634801/93‑1 (MQ=255)
aTAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAcgc > 2:2492847/1‑93 (MQ=255)
tAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAcgcg > 1:2752571/1‑93 (MQ=255)
tAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAcgcg > 2:287132/1‑93 (MQ=255)
gCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCAt < 2:2601074/93‑1 (MQ=255)
cAAGTCCAGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCAtg > 1:1915/1‑93 (MQ=255)
aaGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCAtgt > 2:5404974/1‑93 (MQ=255)
tCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGAt < 1:1005603/93‑1 (MQ=255)
tCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGAt < 1:6029359/93‑1 (MQ=255)
tCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGAt > 1:516638/1‑93 (MQ=255)
cGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATAc < 1:5742136/93‑1 (MQ=255)
ggCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAAGTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACt < 2:4953752/93‑1 (MQ=255)
gCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTc < 2:2248293/93‑1 (MQ=255)
gCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTc < 2:3745026/93‑1 (MQ=255)
cccATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTca < 2:1655447/93‑1 (MQ=255)
caatatCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTcac < 1:4269713/91‑1 (MQ=255)
cATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTcaca > 1:1288094/1‑93 (MQ=255)
cATATCGCATTACACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTcaca > 1:2608303/1‑93 (MQ=255)
atatCGCATTATACCCCATCGTTTCCCGGAGGAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACaa > 1:3153114/1‑93 (MQ=255)
tatCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAAt > 2:4901570/1‑93 (MQ=255)
tatCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAAt > 1:739861/1‑93 (MQ=255)
atCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATa < 1:4821203/93‑1 (MQ=255)
aTTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAAt < 2:5757912/93‑1 (MQ=255)
aTTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAAt < 2:3193037/93‑1 (MQ=255)
ttATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATg < 1:2943488/93‑1 (MQ=255)
ttATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATg < 2:1215541/93‑1 (MQ=255)
tataCCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATgg < 1:4889457/93‑1 (MQ=255)
ccccATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGaa < 2:21968/93‑1 (MQ=255)
cccATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAg < 1:3666911/93‑1 (MQ=255)
cATCGTTTCCCGGAGTAACTGCGGCATAAGGACTATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGtt < 1:895025/93‑1 (MQ=255)
cATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGtt < 1:78449/93‑1 (MQ=255)
aTCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTa > 2:5297660/1‑93 (MQ=255)
aTCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTa > 1:421111/1‑93 (MQ=255)
aTCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTa < 1:2618890/93‑1 (MQ=255)
tCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTAc < 2:4564460/93‑1 (MQ=255)
cGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACg > 2:4083969/1‑93 (MQ=255)
gTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACgg < 2:4688816/93‑1 (MQ=255)
gTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACgg < 2:2027590/93‑1 (MQ=255)
gTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACgg > 2:3449982/1‑93 (MQ=255)
ttCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGa < 2:6096802/93‑1 (MQ=255)
|
CGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGA > NC_000913/2479208‑2479386
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGACTTAA > NC_000913/2479206‑2479391
|
AACGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCG > SRR4302537.21778/1‑94 (MQ=60)
AACGTCCCATCAAAGGTGAAATTAATAGTAGCATGATGCCGATCGGCCCATAAGGAAGTCGGGCTCATATCGCATTATACCCCATCTTTTCCCG < SRR4302537.344439/94‑1 (MQ=60)
CGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGA < SRR4302537.5056533/94‑1 (MQ=60)
GTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAG > SRR4302537.4460732/1‑94 (MQ=60)
TCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGT > SRR4302537.2926874/1‑94 (MQ=60)
CCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTA > SRR4302537.3018674/1‑94 (MQ=60)
CCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTA > SRR4302537.594906/1‑94 (MQ=60)
CCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTA < SRR4302537.4778658/94‑1 (MQ=60)
CCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTA > SRR4302537.2328720/1‑94 (MQ=60)
CTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAA > SRR4302537.6182010/1‑94 (MQ=60)
CTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAA < SRR4302537.4762633/94‑1 (MQ=60)
TATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAAC < SRR4302537.3096230/94‑1 (MQ=60)
TATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAAC > SRR4302537.2011104/1‑94 (MQ=60)
ATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACT > SRR4302537.6159678/1‑94 (MQ=60)
ATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACT < SRR4302537.703431/94‑1 (MQ=60)
TCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTG < SRR4302537.3119217/94‑1 (MQ=60)
AAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCG < SRR4302537.3086242/94‑1 (MQ=60)
AAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCG < SRR4302537.2589215/94‑1 (MQ=60)
AAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGG > SRR4302537.2031182/1‑94 (MQ=60)
AAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGG > SRR4302537.6459371/1‑94 (MQ=60)
GTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCAT > SRR4302537.6509499/1‑94 (MQ=60)
TGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATA > SRR4302537.411518/1‑94 (MQ=60)
GAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAA > SRR4302537.1489581/1‑94 (MQ=60)
AAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAG < SRR4302537.4655409/94‑1 (MQ=60)
AAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCAATCGCTTCCCGGGGTAACTGCGGCATAAG > SRR4302537.1996281/1‑94 (MQ=60)
AATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGG < SRR4302537.3071189/94‑1 (MQ=60)
ATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGA > SRR4302537.3015394/1‑94 (MQ=60)
TTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGAC < SRR4302537.1300135/94‑1 (MQ=60)
TTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGAC < SRR4302537.1043323/94‑1 (MQ=60)
TTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGAC < SRR4302537.3565067/94‑1 (MQ=60)
TTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGAC < SRR4302537.86698/94‑1 (MQ=60)
TAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACG > SRR4302537.1859173/1‑94 (MQ=60)
ATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAT > SRR4302537.4505528/1‑94 (MQ=60)
ATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGAT < SRR4302537.199357/94‑1 (MQ=60)
TAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATC < SRR4302537.613122/94‑1 (MQ=60)
TAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATC < SRR4302537.156337/94‑1 (MQ=60)
AGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCG > SRR4302537.3126306/1‑94 (MQ=60)
GTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGC > SRR4302537.1653080/1‑94 (MQ=60)
GTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGC > SRR4302537.5374583/1‑94 (MQ=60)
GTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGC < SRR4302537.1533955/94‑1 (MQ=60)
GTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGC < SRR4302537.4049529/94‑1 (MQ=60)
TGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCT < SRR4302537.1901819/94‑1 (MQ=60)
TGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCT < SRR4302537.2144008/94‑1 (MQ=60)
GGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCT < SRR4302537.3401790/94‑1 (MQ=60)
CATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCA < SRR4302537.6340774/94‑1 (MQ=60)
ATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAG > SRR4302537.3622135/1‑94 (MQ=60)
ATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAG > SRR4302537.4885681/1‑94 (MQ=60)
TGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGA > SRR4302537.5671466/1‑94 (MQ=60)
TGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTA < SRR4302537.5016929/94‑1 (MQ=60)
TGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTA > SRR4302537.6095745/1‑94 (MQ=60)
TGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTA < SRR4302537.3515510/94‑1 (MQ=60)
TGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTA < SRR4302537.5366304/94‑1 (MQ=60)
TGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTA < SRR4302537.5519258/94‑1 (MQ=60)
CCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAA > SRR4302537.2617509/1‑94 (MQ=60)
CCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAA > SRR4302537.5749924/1‑94 (MQ=60)
CGATGGGCGTATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAA > SRR4302537.1225451/1‑94 (MQ=60)
CGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAA > SRR4302537.2866046/1‑94 (MQ=60)
GATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAAT < SRR4302537.328930/94‑1 (MQ=60)
ATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCAAGAGGAAAATA > SRR4302537.626631/1‑94 (MQ=60)
GGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAA < SRR4302537.3855669/94‑1 (MQ=60)
GGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAAT > SRR4302537.314984/1‑94 (MQ=60)
GCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATA > SRR4302537.1001114/1‑94 (MQ=60)
GCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATA < SRR4302537.2480027/94‑1 (MQ=60)
GCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATA < SRR4302537.2263308/94‑1 (MQ=60)
CGCATAAGCAAGTCCGGCCCATATCGCATTATGCCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAC < SRR4302537.3023245/94‑1 (MQ=60)
CGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAC < SRR4302537.3913513/94‑1 (MQ=60)
CGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATAC < SRR4302537.2798801/94‑1 (MQ=60)
GCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACG < SRR4302537.2804875/94‑1 (MQ=60)
ATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCG > SRR4302537.2771780/1‑94 (MQ=60)
GCAAGTCCAGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATG > SRR4302537.1928/1‑94 (MQ=60)
CAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGT > SRR4302537.3931865/1‑94 (MQ=60)
CAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGT < SRR4302537.4839446/94‑1 (MQ=60)
CAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGT > SRR4302537.1030711/1‑94 (MQ=60)
GTCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGAT > SRR4302537.520193/1‑94 (MQ=60)
TCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATA < SRR4302537.1012543/94‑1 (MQ=60)
TCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATA < SRR4302537.2637321/94‑1 (MQ=60)
TCCGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATA < SRR4302537.6070790/94‑1 (MQ=60)
CCGGCTCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATAC < SRR4302537.1256715/94‑1 (MQ=60)
CGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGaccaaaggctccggagaaaaataaaaacccgaatgtgtaatt > SRR4302537.2444551/1‑52 (MQ=60)
CGGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACT < SRR4302537.5781452/94‑1 (MQ=60)
GGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTC > SRR4302537.2633022/1‑94 (MQ=60)
GGCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTC > SRR4302537.555565/1‑94 (MQ=60)
GCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCA > SRR4302537.2974436/1‑94 (MQ=60)
GCCCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCA < SRR4302537.5937266/94‑1 (MQ=60)
CCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACA > SRR4302537.1297055/1‑94 (MQ=60)
CCATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACA < SRR4302537.2959775/94‑1 (MQ=60)
CCATATCGCATTACACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACA > SRR4302537.2626544/1‑94 (MQ=60)
CAATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACA < SRR4302537.4299379/94‑1 (MQ=60)
CATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAA > SRR4302537.2787637/1‑94 (MQ=60)
CATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAA > SRR4302537.3812922/1‑94 (MQ=60)
CATATCGCATTATACCCCATCGTTTCCCGGAGGAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAA > SRR4302537.3175254/1‑94 (MQ=60)
ATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAAT < SRR4302537.519105/94‑1 (MQ=60)
ATATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAAT > SRR4302537.744908/1‑94 (MQ=60)
TATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATA > SRR4302537.119944/1‑94 (MQ=60)
ATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATAC < SRR4302537.4854504/94‑1 (MQ=60)
ATCGCATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATAC > SRR4302537.4960848/1‑94 (MQ=60)
ATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATG < SRR4302537.4516012/94‑1 (MQ=60)
ATTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATG > SRR4302537.6415432/1‑94 (MQ=60)
TTATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGG < SRR4302537.2964150/94‑1 (MQ=60)
TATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGT < SRR4302537.4923223/94‑1 (MQ=60)
ATACCGCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTG < SRR4302537.760464/94‑1 (MQ=60)
ATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTG < SRR4302537.4273966/94‑1 (MQ=60)
ATACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTG < SRR4302537.4158298/94‑1 (MQ=60)
TACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGA < SRR4302537.6064998/94‑1 (MQ=60)
ACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAA < SRR4302537.5972805/94‑1 (MQ=60)
ACCCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAA < SRR4302537.4083358/94‑1 (MQ=60)
CCCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGT < SRR4302537.3692717/94‑1 (MQ=60)
CCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTT < SRR4302537.5389104/94‑1 (MQ=60)
CCATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTT > SRR4302537.4623251/1‑94 (MQ=60)
CATCGTTTCCCGGAGTAACTGCGGCATAAGGACTATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTA < SRR4302537.901206/94‑1 (MQ=60)
CATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTA < SRR4302537.1633995/94‑1 (MQ=60)
CATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTA > SRR4302537.424029/1‑94 (MQ=60)
CATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTA < SRR4302537.79023/94‑1 (MQ=60)
ATCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTAC < SRR4302537.2637195/94‑1 (MQ=60)
TCGTTTCCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACG > SRR4302537.1987057/1‑94 (MQ=60)
CCCGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGACTT > SRR4302537.3544607/1‑94 (MQ=60)
CGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGACTTAA > SRR4302537.5591936/1‑94 (MQ=60)
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AACGTCCTATCAAAGGTGAAATTAATAGTGGCATGATGCCGATGGGCGCATAAGCAAGTCCGGCCCATATCGCATTATACCCCATCGTTTCCTGGAGTAACTGCGGCATAAGGACGATCGCTCCAGAGTAAAATAAATACGCGCATGTGATACTCACAATACCAATGGTGAAGTTACGGGACTTAA > NC_000913/2479206‑2479391
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
