Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,481,497 |
(A)8→9 |
intergenic (‑138/‑278) |
emrK ← / → evgA |
multidrug resistance protein K/EvgA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,481,489 | 1 | . | A | 99.6%
| 832.9
/ ‑3.6
| 232 | intergenic (‑130/‑286) | emrK/evgA | multidrug resistance protein K/EvgA |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (131/100); total (132/100) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01 |
Only 100 of 271 total aligned reads displayed.
GAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACT > NC_000913/2481398‑2481576
|
gaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑a > 1:1043629/1‑93 (MQ=255)
gaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑a > 2:1145476/1‑93 (MQ=255)
gaatgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑a > 1:4211435/1‑93 (MQ=255)
atgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaa > 2:643470/1‑93 (MQ=255)
atgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaa > 1:2103970/1‑93 (MQ=255)
tgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaa < 1:6309321/93‑1 (MQ=255)
tgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaa < 1:4506423/93‑1 (MQ=255)
tgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaa > 1:378502/1‑93 (MQ=255)
tgaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaa < 1:2982447/93‑1 (MQ=255)
gaaAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaaa > 1:1071849/1‑93 (MQ=255)
aaaaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaaaa > 1:819608/1‑93 (MQ=255)
aaGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaaaaaa > 2:2137450/1‑93 (MQ=255)
agagCATTCATTCTTCATATCAACCACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaaaaaaa < 2:2803565/93‑2 (MQ=255)
agagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaaaaaaa > 2:1285192/1‑92 (MQ=255)
agagCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑aaaaaaaaa > 2:5774307/1‑92 (MQ=255)
tcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACaga > 1:2740592/1‑93 (MQ=255)
tcattcTTCATATCAAACACAGTGCATGTGTTGCACATTATACCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACaga > 2:6277652/1‑93 (MQ=255)
cattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACagag > 2:3845560/1‑93 (MQ=255)
cattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACagag < 1:3109662/93‑1 (MQ=255)
cattcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACagag > 2:5704318/1‑93 (MQ=255)
attcTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAgg > 1:1382202/1‑93 (MQ=255)
ttcttcATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGa < 2:5466796/93‑1 (MQ=255)
ttcttcATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGa < 1:3169712/93‑1 (MQ=255)
ttcttcATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGa > 2:2660064/1‑93 (MQ=255)
tcATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTaa > 2:2000238/1‑93 (MQ=255)
atatCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAAc < 2:3946324/93‑1 (MQ=255)
tatCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAAcc < 2:2174652/93‑1 (MQ=255)
tatCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAAcc > 2:4205656/1‑93 (MQ=255)
tatCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGCCCT‑AATTTAAATGGGGGGCAAAAAAAAACAACAGGGCACAAAAcc > 1:5218292/1‑93 (MQ=255)
atCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCg > 2:6408666/1‑93 (MQ=255)
tCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGt > 1:5615585/1‑93 (MQ=255)
tCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGt > 2:4250747/1‑93 (MQ=255)
tCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGt < 2:3538850/93‑1 (MQ=255)
tCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGt > 2:2999957/1‑93 (MQ=255)
aaaCACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTgg > 2:6118338/1‑93 (MQ=255)
aaCACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGc < 2:5225101/93‑1 (MQ=255)
acacAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCt > 1:5817749/1‑93 (MQ=255)
acaGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCttt < 2:2601995/93‑1 (MQ=255)
caGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCtttt < 1:90999/93‑1 (MQ=255)
aGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTg > 2:2092570/1‑93 (MQ=255)
tGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCa > 1:5443827/1‑93 (MQ=255)
gCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCaa > 2:826952/1‑93 (MQ=255)
gCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCaa > 1:4673443/1‑93 (MQ=255)
aTGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATa > 2:4454562/1‑93 (MQ=255)
tgtgTTGCACATTATCCCAGGGACGTTGGAGGCCT‑AATTTAAATGAGTTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATAc < 1:472191/93‑1 (MQ=255)
tgtTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACaa < 2:3169298/93‑1 (MQ=255)
tgtTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACaa < 2:5524817/93‑1 (MQ=255)
ttGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGATTAAACCGTGGCTTTTGCAATACAAtt < 1:3849221/93‑1 (MQ=255)
tGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTc < 2:4529369/93‑1 (MQ=255)
tGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAAAAAAATTc > 1:1763759/1‑93 (MQ=255)
acaTTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTa > 2:4823133/1‑93 (MQ=255)
caTTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTAc < 2:3061224/93‑1 (MQ=255)
caTTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTAc < 1:3390472/93‑1 (MQ=255)
aTTACCCCA‑GAACCTTGGAAGCCTAAATTAAAAGGAGTTCA‑AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGc < 2:1097194/93‑1 (MQ=255)
ttATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGc > 2:3782334/1‑93 (MQ=255)
aTCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCt > 1:4321745/1‑93 (MQ=255)
tCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTg > 1:6195252/1‑93 (MQ=255)
cAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGATGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAg < 1:3460920/93‑1 (MQ=255)
cAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAg > 2:5034924/1‑93 (MQ=255)
cAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAg > 2:1436734/1‑93 (MQ=255)
aGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAgg > 1:5922911/1‑93 (MQ=255)
aGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAgg > 1:229209/1‑93 (MQ=255)
aGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAgg < 1:4920510/93‑1 (MQ=255)
ggAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGa > 2:5517350/1‑93 (MQ=255)
gAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGAt > 2:6204529/1‑93 (MQ=255)
gAACGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGAt > 2:4055317/1‑93 (MQ=255)
aaCGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGAtt < 2:1936163/93‑1 (MQ=255)
aaCGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGAtt < 1:4839054/93‑1 (MQ=255)
aCGTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTa < 2:133625/93‑1 (MQ=255)
gTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt > 2:4644813/1‑93 (MQ=255)
gTTGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGt > 1:1533242/1‑93 (MQ=255)
ttGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa < 2:3100742/93‑1 (MQ=255)
ttGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa > 1:1979633/1‑93 (MQ=255)
ttGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa < 2:3573142/93‑1 (MQ=255)
ttGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTa > 1:3560038/1‑93 (MQ=255)
tGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaa < 1:2149333/93‑1 (MQ=255)
tGGAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaa < 2:4914691/93‑1 (MQ=255)
tGGAGGCAT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaa < 1:3059434/93‑1 (MQ=255)
ggAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaag > 1:2548473/1‑93 (MQ=255)
gAGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaaga > 2:6466560/1‑93 (MQ=255)
aGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaagaa < 2:749318/93‑1 (MQ=255)
aGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaagaa < 1:3616692/93‑1 (MQ=255)
aGGCCT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTaagaa < 1:6382732/93‑1 (MQ=255)
ccT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGAc < 1:1577180/93‑1 (MQ=255)
cT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACt < 1:6343743/93‑1 (MQ=255)
cT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACt > 1:6462816/1‑93 (MQ=255)
cT‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACt > 1:980060/1‑93 (MQ=255)
t‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACtt > 1:4806066/1‑93 (MQ=255)
t‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACtt > 1:4014531/1‑93 (MQ=255)
t‑AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACtt > 2:4316113/1‑93 (MQ=255)
tttAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTtata < 1:4472384/93‑1 (MQ=255)
tttAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTtata < 2:2981054/93‑1 (MQ=255)
ttAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAg < 1:3430901/93‑1 (MQ=255)
aTGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGcc < 1:26253/93‑1 (MQ=255)
aTGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGcc > 1:3145777/1‑93 (MQ=255)
gAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCaa < 2:6001096/93‑1 (MQ=255)
gAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCaa < 1:2914816/93‑1 (MQ=255)
ggTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACt < 2:4169942/93‑1 (MQ=255)
ggTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACt > 2:1745290/1‑93 (MQ=255)
ggTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACt > 2:344400/1‑93 (MQ=255)
|
GAATGAAAAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCT‑AATTTAAATGAGGTGC‑AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACT > NC_000913/2481398‑2481576
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATC > NC_000913/2481405‑2481590
|
AAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAAA > SRR4302537.2809805/1‑94 (MQ=60)
AGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAAac < SRR4302537.5132013/94‑3 (MQ=60)
GAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAAaca > SRR4302537.2122578/1‑91 (MQ=60)
GAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAAaca < SRR4302537.4857014/94‑4 (MQ=60)
CATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACA > SRR4302537.1632209/1‑94 (MQ=60)
CATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACA < SRR4302537.3177058/94‑1 (MQ=60)
CATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACA < SRR4302537.5325745/94‑1 (MQ=60)
TTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGA > SRR4302537.4188572/1‑94 (MQ=60)
TTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGA > SRR4302537.4802750/1‑94 (MQ=60)
TTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGA > SRR4302537.2759714/1‑94 (MQ=60)
TCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAG > SRR4302537.5869585/1‑94 (MQ=60)
CATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGG < SRR4302537.3131380/94‑1 (MQ=60)
CATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGG > SRR4302537.1391847/1‑94 (MQ=60)
CATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGG < SRR4302537.1969244/94‑1 (MQ=60)
CATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGG > SRR4302537.4773074/1‑94 (MQ=60)
TTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGAC < SRR4302537.3191982/94‑1 (MQ=60)
TTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGAC > SRR4302537.3729758/1‑94 (MQ=60)
TTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGAC < SRR4302537.4015288/94‑1 (MQ=60)
TTCTTCATATCAAACACAGTGCATGAGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGAC < SRR4302537.6290783/94‑1 (MQ=60)
TCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACT < SRR4302537.3766874/94‑1 (MQ=60)
TCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACT < SRR4302537.1078587/94‑1 (MQ=60)
CTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTA > SRR4302537.4842575/1‑94 (MQ=60)
TTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAA > SRR4302537.4525239/1‑94 (MQ=60)
TTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAACAACAGAGGACTAAA > SRR4302537.942310/1‑94 (MQ=60)
CATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAAC > SRR4302537.5547853/1‑94 (MQ=60)
ATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGCCCTAATTTAAATGGGGGGC‑AAAAAAAAacaacagggcacaaaacc > SRR4302537.5254182/1‑76 (MQ=60)
TATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCG > SRR4302537.6118774/1‑94 (MQ=60)
ATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGT > SRR4302537.5653981/1‑94 (MQ=60)
TCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGGCTAAATCGTG > SRR4302537.3853562/1‑94 (MQ=60)
TCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTG < SRR4302537.3554573/94‑1 (MQ=60)
CAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGG < SRR4302537.4602879/94‑1 (MQ=60)
CAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGG > SRR4302537.91639/1‑94 (MQ=60)
AAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGC > SRR4302537.6125243/1‑94 (MQ=60)
AACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCT > SRR4302537.5857627/1‑94 (MQ=60)
AACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCT < SRR4302537.646734/94‑1 (MQ=60)
ACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTT < SRR4302537.1097357/94‑1 (MQ=60)
ACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTT < SRR4302537.343879/94‑1 (MQ=60)
CACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTT > SRR4302537.6382619/1‑94 (MQ=60)
CAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTG < SRR4302537.91664/94‑1 (MQ=60)
GTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCA < SRR4302537.3313193/94‑1 (MQ=60)
GTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCA > SRR4302537.5480965/1‑94 (MQ=60)
TGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAA < SRR4302537.4753428/94‑1 (MQ=60)
TGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAA > SRR4302537.4705776/1‑94 (MQ=60)
TGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAA > SRR4302537.3053059/1‑94 (MQ=60)
TGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAA > SRR4302537.2690286/1‑94 (MQ=60)
GCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAAT < SRR4302537.3434776/94‑1 (MQ=60)
ATGTGTTGCACATTATCCCAGGAACGTTGGAGGTCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAATCGTGGCTTTTGCAATAA > SRR4302537.1005342/1‑94 (MQ=60)
ATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATAC < SRR4302537.347310/94‑1 (MQ=60)
TGTGTTGCACATTATCCCAGGGACGTTGGAGGCCTAATTTAAATGAGTTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACA < SRR4302537.475425/94‑1 (MQ=60)
TGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAAT < SRR4302537.1435149/94‑1 (MQ=60)
TTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGATTAAACCGTGGCTTTTGCAATACAATTC < SRR4302537.3876178/94‑1 (MQ=60)
TTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAAAAAAATTC > SRR4302537.1776045/1‑94 (MQ=60)
GCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTT < SRR4302537.3346235/94‑1 (MQ=60)
ACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTAC > SRR4302537.5663804/1‑94 (MQ=60)
ACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTAC < SRR4302537.6386079/94‑1 (MQ=60)
ACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTAC > SRR4302537.5955734/1‑94 (MQ=60)
CATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACG < SRR4302537.3414490/94‑1 (MQ=60)
CATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACG < SRR4302537.3626257/94‑1 (MQ=60)
CATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACG > SRR4302537.1614299/1‑94 (MQ=60)
CATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACG > SRR4302537.3896377/1‑94 (MQ=60)
CATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACG < SRR4302537.3557617/94‑1 (MQ=60)
ATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGC > SRR4302537.4274417/1‑94 (MQ=60)
TATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCT > SRR4302537.4351790/1‑94 (MQ=60)
ATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTG > SRR4302537.2793715/1‑94 (MQ=60)
ATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTG > SRR4302537.6237945/1‑94 (MQ=60)
ATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTG > SRR4302537.5747588/1‑94 (MQ=60)
TCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGT < SRR4302537.6393857/94‑1 (MQ=60)
CAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGATGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGG < SRR4302537.3485388/94‑1 (MQ=60)
CAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGG > SRR4302537.5963550/1‑94 (MQ=60)
CAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGG > SRR4302537.2093976/1‑94 (MQ=60)
CAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGG > SRR4302537.230831/1‑94 (MQ=60)
CAGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGG < SRR4302537.4513243/94‑1 (MQ=60)
AGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGCGGACTAAACCGTGGCTTTTGCAATACAATTCTTAAGTCTGTAGGT > SRR4302537.29510/1‑94 (MQ=60)
AGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGA < SRR4302537.4954453/94‑1 (MQ=60)
AGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGA > SRR4302537.4380950/1‑94 (MQ=60)
AGGAACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGA < SRR4302537.4946172/94‑1 (MQ=60)
AACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTA > SRR4302537.1929669/1‑94 (MQ=60)
AACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTA < SRR4302537.4872457/94‑1 (MQ=60)
AACGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTA > SRR4302537.2359776/1‑94 (MQ=60)
CGTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGT > SRR4302537.1543955/1‑94 (MQ=60)
GTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTA > SRR4302537.1993388/1‑94 (MQ=60)
GTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTA > SRR4302537.3585153/1‑94 (MQ=60)
GTTGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTA > SRR4302537.3132718/1‑94 (MQ=60)
TGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACGATTCTTACGCCTGTAGGATTAGTAAG < SRR4302537.4975824/94‑1 (MQ=60)
TGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAG < SRR4302537.2164481/94‑1 (MQ=60)
TGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAG > SRR4302537.2566326/1‑94 (MQ=60)
TGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAG > SRR4302537.3127481/1‑94 (MQ=60)
TGGAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAG < SRR4302537.2680227/94‑1 (MQ=60)
TGGAGGCATAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAG < SRR4302537.3080750/94‑1 (MQ=60)
GAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAA > SRR4302537.2607973/1‑94 (MQ=60)
GAGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAA < SRR4302537.3188331/94‑1 (MQ=60)
AGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAG < SRR4302537.6426240/94‑1 (MQ=60)
AGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAG > SRR4302537.6389546/1‑94 (MQ=60)
AGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAG < SRR4302537.3058418/94‑1 (MQ=60)
AGGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAG < SRR4302537.3642190/94‑1 (MQ=60)
GGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGA < SRR4302537.1457736/94‑1 (MQ=60)
GGCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGA > SRR4302537.3117748/1‑94 (MQ=60)
GCCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGAC < SRR4302537.936144/94‑1 (MQ=60)
CCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACT > SRR4302537.6506602/1‑94 (MQ=60)
CCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACT < SRR4302537.1588178/94‑1 (MQ=60)
CCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACT > SRR4302537.986826/1‑94 (MQ=60)
CCTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACT < SRR4302537.2228269/94‑1 (MQ=60)
CTAATTTAAATGAGGTGCAAAAAAAAAGAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTT > SRR4302537.2148195/1‑94 (MQ=60)
CTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTT > SRR4302537.4839215/1‑94 (MQ=60)
CTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTT > SRR4302537.4042643/1‑94 (MQ=60)
CTAATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTT < SRR4302537.6387078/94‑1 (MQ=60)
AATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTAT < SRR4302537.4668025/94‑1 (MQ=60)
ATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATA < SRR4302537.6513797/94‑1 (MQ=60)
ATTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATA < SRR4302537.5372770/94‑1 (MQ=60)
TTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAG > SRR4302537.5305800/1‑94 (MQ=60)
TTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAG < SRR4302537.4503324/94‑1 (MQ=60)
TTTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAG < SRR4302537.4456299/94‑1 (MQ=60)
TTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGT < SRR4302537.3455182/94‑1 (MQ=60)
TTAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGT < SRR4302537.2208894/94‑1 (MQ=60)
TAAATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTG > SRR4302537.3165289/1‑94 (MQ=60)
AATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCC > SRR4302537.3167849/1‑94 (MQ=60)
ATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCA < SRR4302537.26459/94‑1 (MQ=60)
ATGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCA < SRR4302537.3606400/94‑1 (MQ=60)
TGAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAA > SRR4302537.2562451/1‑94 (MQ=60)
GAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAAC < SRR4302537.2935288/94‑1 (MQ=60)
GAGGTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAAC < SRR4302537.6509159/94‑1 (MQ=60)
GTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTG < SRR4302537.3449498/94‑1 (MQ=60)
GTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTG > SRR4302537.357019/1‑94 (MQ=60)
GTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTG < SRR4302537.489010/94‑1 (MQ=60)
GTGCAAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTG > SRR4302537.5946449/1‑94 (MQ=60)
caAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAA > SRR4302537.3178479/3‑94 (MQ=60)
caAAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAA < SRR4302537.3144294/92‑1 (MQ=60)
A‑AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAAC < SRR4302537.2235999/94‑1 (MQ=60)
AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACT > SRR4302537.268474/1‑94 (MQ=60)
AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACT > SRR4302537.5185297/1‑94 (MQ=60)
AAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTA > SRR4302537.347579/1‑94 (MQ=60)
AAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTA > SRR4302537.4581647/1‑94 (MQ=60)
AAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTA < SRR4302537.1696962/94‑1 (MQ=60)
AAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTAT < SRR4302537.6462485/94‑1 (MQ=60)
AAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTAT > SRR4302537.4785019/1‑94 (MQ=60)
AAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTAT < SRR4302537.856043/94‑1 (MQ=60)
AAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATA < SRR4302537.1150541/94‑1 (MQ=60)
AAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATA > SRR4302537.28651/1‑94 (MQ=60)
AAAAACAACAGAGGACTAAACCGTGGCTTCTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATA < SRR4302537.4843034/94‑1 (MQ=60)
AAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAA < SRR4302537.4074734/94‑1 (MQ=60)
AAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAA > SRR4302537.6118387/1‑94 (MQ=60)
AAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAA < SRR4302537.1684920/94‑1 (MQ=60)
ACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATC < SRR4302537.4677252/94‑1 (MQ=60)
ACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATC > SRR4302537.5197932/1‑94 (MQ=60)
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AAGAGCATTCATTCTTCATATCAAACACAGTGCATGTGTTGCACATTATCCCAGGAACGTTGGAGGCCTAATTTAAATGAGGTGC‑AAAAAAAACAACAGAGGACTAAACCGTGGCTTTTGCAATACAATTCTTACGCCTGTAGGATTAGTAAGAAGACTTATAGTGCCAACTTGAAACTATAAATC > NC_000913/2481405‑2481590
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
