Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,487,342	T→C	T289A (ACA→GCA)	b2372 ←	putative receptor protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,487,342	0	T	C	100.0%	785.9 / NA	226	T289A (ACA→GCA)	b2372	putative receptor protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (118/108); total (118/108)

Only 100 of 234 total aligned reads displayed.

ATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCA  >  NC_000913/2487254‑2487431

  gATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGt                                                                                     <  1:1570605/93‑1 (MQ=255)

   attaattaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTa                                                                                    <  1:5190780/93‑1 (MQ=255)

      aattaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACgg                                                                                 <  2:5191581/93‑1 (MQ=255)

       attaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACggg                                                                                >  1:2565311/1‑93 (MQ=255)

       attaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACggg                                                                                >  1:4651212/1‑93 (MQ=255)

       attaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACggg                                                                                >  2:1631201/1‑93 (MQ=255)

        ttaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGATGCTGCACCAGTACGGgt                                                                               <  2:1200862/93‑1 (MQ=255)

        ttaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACgggg                                                                               >  2:4306729/1‑92 (MQ=255)

        ttaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGgt                                                                               >  1:6270770/1‑93 (MQ=255)

        ttaTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGgt                                                                               <  1:6152602/93‑1 (MQ=255)

         taTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGgtg                                                                              <  1:5815049/93‑1 (MQ=255)

         taTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGgtg                                                                              >  1:2750929/1‑93 (MQ=255)

          aTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGgtgt                                                                             >  2:5055840/1‑93 (MQ=255)

          aTGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGgtgt                                                                             >  1:3143162/1‑93 (MQ=255)

           tGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTa                                                                            >  1:2346679/1‑93 (MQ=255)

            gAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAg                                                                           >  2:3650720/1‑93 (MQ=255)

             aaaCCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACTCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGa                                                                          <  2:2174596/93‑1 (MQ=255)

             aaaCCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGa                                                                          >  2:3563958/1‑93 (MQ=255)

              aaCCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGAc                                                                         >  2:5317016/1‑93 (MQ=255)

                ccAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACAt                                                                       >  1:3716483/1‑93 (MQ=255)

                 cAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACAtt                                                                      >  1:1908130/1‑93 (MQ=255)

                 cAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACAtt                                                                      <  1:3827058/93‑1 (MQ=255)

                   gTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTaa                                                                    >  2:2395615/1‑93 (MQ=255)

                    tCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTaaa                                                                   >  1:4879421/1‑93 (MQ=255)

                     cGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAAc                                                                  <  2:4877026/93‑1 (MQ=255)

                      gACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAAcc                                                                 >  2:1460727/1‑93 (MQ=255)

                      gACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAAcc                                                                 >  2:145058/1‑93 (MQ=255)

                      gACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAAcc                                                                 >  1:5486406/1‑93 (MQ=255)

                       aCTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCg                                                                >  2:4057131/1‑93 (MQ=255)

                       aCTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCg                                                                >  1:1396951/1‑93 (MQ=255)

                        cTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCgg                                                               >  1:4799163/1‑93 (MQ=255)

                         tGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGc                                                              >  1:1869191/1‑93 (MQ=255)

                          gACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCt                                                             >  2:3256958/1‑93 (MQ=255)

                          gACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCt                                                             >  1:1529135/1‑93 (MQ=255)

                          gACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCt                                                             >  2:3761278/1‑93 (MQ=255)

                           aCATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTg                                                            <  1:1141253/93‑1 (MQ=255)

                           aCATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTg                                                            <  1:4521691/93‑1 (MQ=255)

                           aCATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGATGCACCAGGACGGTTGTAGATATTAAACCGGCTg                                                            >  2:4186828/1‑93 (MQ=255)

                            cATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTgg                                                           >  1:3476453/1‑93 (MQ=255)

                            cATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTgg                                                           >  1:2684778/1‑93 (MQ=255)

                              tAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCa                                                         >  2:756104/1‑93 (MQ=255)

                               aaaTCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCaa                                                        <  1:4732028/93‑1 (MQ=255)

                               aaaTCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCaa                                                        <  1:5734718/93‑1 (MQ=255)

                               aaaTCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCaa                                                        >  1:1053153/1‑93 (MQ=255)

                                aaTCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCaat                                                       >  2:2032128/1‑93 (MQ=255)

                                 aTCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCaata                                                      >  2:2545469/1‑93 (MQ=255)

                                    cacaAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATg                                                   <  1:1647878/93‑1 (MQ=255)

                                      caAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGAt                                                 <  2:1640390/93‑1 (MQ=255)

                                      caAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGAt                                                 >  1:6075296/1‑93 (MQ=255)

                                       aaGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGAtt                                                <  2:1689166/93‑1 (MQ=255)

                                       aaGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGAtt                                                <  1:4671679/93‑1 (MQ=255)

                                        aGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTc                                               <  2:5606282/93‑1 (MQ=255)

                                         gggAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTcc                                              <  1:6208381/93‑1 (MQ=255)

                                         gggAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTcc                                              <  1:891790/93‑1 (MQ=255)

                                         gggAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTcc                                              <  1:953578/93‑1 (MQ=255)

                                           gAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGACTCCgg                                            >  2:1703075/1‑93 (MQ=255)

                                            aGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGga                                           >  2:4622183/1‑93 (MQ=255)

                                             gCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGgag                                          >  1:4394705/1‑93 (MQ=255)

                                              ccGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGgaga                                         <  1:1300331/93‑1 (MQ=255)

                                               cGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGaa                                        <  2:292297/93‑1 (MQ=255)

                                               cGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGaa                                        <  1:4562526/93‑1 (MQ=255)

                                                gTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAAt                                       >  2:5933336/1‑93 (MQ=255)

                                                gTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAAt                                       <  2:287787/93‑1 (MQ=255)

                                                  gacgacAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGc                                     <  1:5607346/93‑1 (MQ=255)

                                                   acgacAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGcc                                    <  2:2783891/93‑1 (MQ=255)

                                                    cgacAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCcg                                   >  2:3686714/1‑93 (MQ=255)

                                                      acAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCcggc                                 >  1:6044464/1‑93 (MQ=255)

                                                      acAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCcggc                                 >  1:3445102/1‑93 (MQ=255)

                                                       aaaaGCCCAGTGCGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCcggcg                                <  2:3124017/92‑1 (MQ=255)

                                                        aaaGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCcggcgg                               >  2:4981428/1‑93 (MQ=255)

                                                         aaGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGt                              >  1:6348815/1‑93 (MQ=255)

                                                         aaGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGt                              >  2:6458389/1‑93 (MQ=255)

                                                           gCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTaa                            <  2:2746465/93‑1 (MQ=255)

                                                           gCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTaa                            <  1:4101410/93‑1 (MQ=255)

                                                            cccAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAAt                           >  1:5393357/1‑93 (MQ=255)

                                                             ccAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATg                          <  2:1362746/93‑1 (MQ=255)

                                                              cAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATgc                         >  2:4453155/1‑93 (MQ=255)

                                                               aGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATgcg                        >  1:5004497/1‑93 (MQ=255)

                                                               aGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATgcg                        >  2:3980322/1‑93 (MQ=255)

                                                               aGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATgcg                        >  1:2110901/1‑93 (MQ=255)

                                                                gTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATgcgc                       >  2:1971667/1‑93 (MQ=255)

                                                                 tACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGcc                      <  1:2947956/93‑1 (MQ=255)

                                                                    gCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGc                   >  1:5913240/1‑93 (MQ=255)

                                                                      tCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCa                 <  1:1795199/93‑1 (MQ=255)

                                                                           gCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTAcc            <  1:61254/93‑1 (MQ=255)

                                                                              aaTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatc         >  2:3370384/1‑93 (MQ=255)

                                                                              aaTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatc         >  1:2852746/1‑93 (MQ=255)

                                                                              aaTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatc         >  1:71940/1‑93 (MQ=255)

                                                                              aaTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatc         <  1:914026/93‑1 (MQ=255)

                                                                               aTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatca        >  1:531297/1‑93 (MQ=255)

                                                                               aTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatca        <  1:1710540/93‑1 (MQ=255)

                                                                               aTGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACcatca        <  1:3879591/93‑1 (MQ=255)

                                                                                 gACGCTGCACCAGTACGGGTGTAGACATTAACCCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCatcatc      <  1:22065/93‑1 (MQ=255)

                                                                                 gACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCatcatc      <  1:563909/93‑1 (MQ=255)

                                                                                 gACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCatcatc      <  2:3764962/93‑1 (MQ=255)

                                                                                  aCGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCt     >  1:1545084/1‑93 (MQ=255)

                                                                                  aCGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCt     <  2:6108899/93‑1 (MQ=255)

                                                                                   cGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTg    <  2:1757863/93‑1 (MQ=255)

                                                                                   cGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTg    >  2:5755081/1‑93 (MQ=255)

                                                                                     cTGCACCAGTACGGGTGTAGACATTAAGCCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCa  <  2:3320357/93‑1 (MQ=255)

ATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCA  >  NC_000913/2487254‑2487431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATG  >  NC_000913/2487249‑2487435

ATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGC                                                                                               >  SRR4302537.3038545/1‑94 (MQ=60)

 TAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCA                                                                                              <  SRR4302537.6144574/94‑1 (MQ=60)

     ATGATTAATTATGAAACCAGTCGACTGACATAAAGCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAG                                                                                          <  SRR4302537.4686258/94‑1 (MQ=60)

     ATAATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAG                                                                                          <  SRR4302537.1900400/94‑1 (MQ=60)

      TGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGT                                                                                         >  SRR4302537.4202618/1‑94 (MQ=60)

      TGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGT                                                                                         <  SRR4302537.143675/94‑1 (MQ=60)

      TGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGT                                                                                         <  SRR4302537.3038322/94‑1 (MQ=60)

       GATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTA                                                                                        <  SRR4302537.1581563/94‑1 (MQ=60)

        ATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTAC                                                                                       <  SRR4302537.5226483/94‑1 (MQ=60)

        ATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTAC                                                                                       <  SRR4302537.5986313/94‑1 (MQ=60)

        ATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTAC                                                                                       >  SRR4302537.3227679/1‑94 (MQ=60)

           AATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGG                                                                                    >  SRR4302537.4683371/1‑94 (MQ=60)

           AATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGG                                                                                    >  SRR4302537.1799731/1‑94 (MQ=60)

           AATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGG                                                                                    >  SRR4302537.2583286/1‑94 (MQ=60)

            ATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGT                                                                                   >  SRR4302537.6313806/1‑94 (MQ=60)

             TTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTG                                                                                  >  SRR4302537.2770123/1‑94 (MQ=60)

             TTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTG                                                                                  <  SRR4302537.6194925/94‑1 (MQ=60)

             TTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTG                                                                                  >  SRR4302537.6039288/1‑94 (MQ=60)

              TATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGT                                                                                 <  SRR4302537.5854912/94‑1 (MQ=60)

              TATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGT                                                                                 <  SRR4302537.4466891/94‑1 (MQ=60)

              TATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGT                                                                                 >  SRR4302537.1574758/1‑94 (MQ=60)

              TATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGT                                                                                 >  SRR4302537.3751121/1‑94 (MQ=60)

              TATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGT                                                                                 >  SRR4302537.3165222/1‑94 (MQ=60)

               ATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTA                                                                                >  SRR4302537.2363200/1‑94 (MQ=60)

                TGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAG                                                                               >  SRR4302537.5756392/1‑94 (MQ=60)

                TGAAACCAGCCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAG                                                                               <  SRR4302537.1557199/94‑1 (MQ=60)

                  AAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGAC                                                                             <  SRR4302537.2022971/94‑1 (MQ=60)

                   AACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACA                                                                            >  SRR4302537.5463455/1‑94 (MQ=60)

                   AACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGGGTAGACA                                                                            >  SRR4302537.5552462/1‑94 (MQ=60)

                    ACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACAT                                                                           >  SRR4302537.3742607/1‑94 (MQ=60)

                     CCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATT                                                                          >  SRR4302537.1921380/1‑94 (MQ=60)

                      CAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTA                                                                         <  SRR4302537.3853891/94‑1 (MQ=60)

                      CAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTA                                                                         <  SRR4302537.5646097/94‑1 (MQ=60)

                      CAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTA                                                                         >  SRR4302537.2842124/1‑94 (MQ=60)

                       AGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAA                                                                        >  SRR4302537.5832203/1‑94 (MQ=60)

                       AGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGGACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGCAGACATTAA                                                                        >  SRR4302537.957696/1‑94 (MQ=60)

                        GTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAA                                                                       >  SRR4302537.4913127/1‑94 (MQ=60)

                         GCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTAACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAAC                                                                      <  SRR4302537.6304207/94‑1 (MQ=60)

                         GCGACTGACATAAACCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAAC                                                                      <  SRR4302537.5151365/94‑1 (MQ=60)

                          CGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACC                                                                     >  SRR4302537.611403/1‑94 (MQ=60)

                          CGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACC                                                                     >  SRR4302537.5523857/1‑94 (MQ=60)

                          CGACTGAAATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACC                                                                     <  SRR4302537.2582829/94‑1 (MQ=60)

                           GACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCG                                                                    <  SRR4302537.1689109/94‑1 (MQ=60)

                           GACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCG                                                                    >  SRR4302537.1406687/1‑94 (MQ=60)

                           GACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCG                                                                    >  SRR4302537.4753406/1‑94 (MQ=60)

                            ACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGG                                                                   >  SRR4302537.4832275/1‑94 (MQ=60)

                             CTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGC                                                                  >  SRR4302537.1882202/1‑94 (MQ=60)

                              TGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCT                                                                 >  SRR4302537.1539822/1‑94 (MQ=60)

                              TGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACACCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCT                                                                 <  SRR4302537.4573452/94‑1 (MQ=60)

                                ACATAAATCCACAAGGGATCCGCGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGAAGACATTAAACCGCCTGG                                                               >  SRR4302537.1367761/1‑94 (MQ=60)

                                ACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGG                                                               >  SRR4302537.2703522/1‑94 (MQ=60)

                                ACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGG                                                               <  SRR4302537.1149182/94‑1 (MQ=60)

                                ACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGG                                                               <  SRR4302537.1940417/94‑1 (MQ=60)

                                ACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGG                                                               >  SRR4302537.3501055/1‑94 (MQ=60)

                                ACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGG                                                               <  SRR4302537.4552971/94‑1 (MQ=60)

                                  ATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCA                                                             >  SRR4302537.685999/1‑94 (MQ=60)

                                  ATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCA                                                             >  SRR4302537.4108493/1‑94 (MQ=60)

                                   TAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAA                                                            >  SRR4302537.1060418/1‑94 (MQ=60)

                                    AAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAAT                                                           <  SRR4302537.5773982/94‑1 (MQ=60)

                                    AAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAAT                                                           <  SRR4302537.4764722/94‑1 (MQ=60)

                                      ATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAA                                                         >  SRR4302537.5137965/1‑94 (MQ=60)

                                      ATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAA                                                         >  SRR4302537.6204903/1‑94 (MQ=60)

                                      ATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGAGTAGTCATTAAACCGGCTGGCAATAA                                                         >  SRR4302537.3583249/1‑94 (MQ=60)

                                         CACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGA                                                      >  SRR4302537.248852/1‑94 (MQ=60)

                                         CACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGA                                                      >  SRR4302537.1863511/1‑94 (MQ=60)

                                         CACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGA                                                      <  SRR4302537.1659416/94‑1 (MQ=60)

                                          ACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGAT                                                     >  SRR4302537.6117048/1‑94 (MQ=60)

                                            AAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTC                                                   <  SRR4302537.4704005/94‑1 (MQ=60)

                                              GGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCG                                                 <  SRR4302537.2705281/94‑1 (MQ=60)

                                              GGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCG                                                 <  SRR4302537.5908253/94‑1 (MQ=60)

                                              GGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCG                                                 <  SRR4302537.6251154/94‑1 (MQ=60)

                                              GGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCG                                                 <  SRR4302537.897937/94‑1 (MQ=60)

                                              GGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCG                                                 <  SRR4302537.960162/94‑1 (MQ=60)

                                                 AGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAG                                              <  SRR4302537.99058/94‑1 (MQ=60)

                                                 AGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAG                                              >  SRR4302537.5439726/1‑94 (MQ=60)

                                                 AGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAG                                              >  SRR4302537.4425023/1‑94 (MQ=60)

                                                  GCCGAGACGACAAAGCCCAGTCCGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGA                                             <  SRR4302537.5703983/94‑1 (MQ=60)

                                                   CCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAA                                            <  SRR4302537.1309372/94‑1 (MQ=60)

                                                    CGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAAT                                           <  SRR4302537.4594107/94‑1 (MQ=60)

                                                    CGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAAT                                           >  SRR4302537.747243/1‑94 (MQ=60)

                                                       GACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCC                                        <  SRR4302537.5645681/94‑1 (MQ=60)

                                                       GACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCC                                        >  SRR4302537.630199/1‑94 (MQ=60)

                                                       GACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCC                                        >  SRR4302537.527320/1‑94 (MQ=60)

                                                        ACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCG                                       <  SRR4302537.6168588/94‑1 (MQ=60)

                                                         CGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGG                                      >  SRR4302537.1125843/1‑94 (MQ=60)

                                                          GACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGC                                     >  SRR4302537.6085979/1‑94 (MQ=60)

                                                          GACAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGC                                     >  SRR4302537.3469473/1‑94 (MQ=60)

                                                            CAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGG                                   >  SRR4302537.2904840/1‑94 (MQ=60)

                                                            CAAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGG                                   >  SRR4302537.1728767/1‑94 (MQ=60)

                                                             AAAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGT                                  >  SRR4302537.6392171/1‑94 (MQ=60)

                                                              AAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTA                                 <  SRR4302537.1360746/94‑1 (MQ=60)

                                                              AAGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTA                                 >  SRR4302537.1287124/1‑94 (MQ=60)

                                                               AGCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAA                                <  SRR4302537.4657780/94‑1 (MQ=60)

                                                                GCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAAT                               >  SRR4302537.5430193/1‑94 (MQ=60)

                                                                GCCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAAT                               <  SRR4302537.4130047/94‑1 (MQ=60)

                                                                 CCCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATG                              <  SRR4302537.616907/94‑1 (MQ=60)

                                                                  CCAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGC                             <  SRR4302537.4387387/94‑1 (MQ=60)

                                                                   CAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG                            <  SRR4302537.1650124/94‑1 (MQ=60)

                                                                   CAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG                            <  SRR4302537.3838184/94‑1 (MQ=60)

                                                                   CAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG                            >  SRR4302537.5038966/1‑94 (MQ=60)

                                                                   CAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG                            <  SRR4302537.899096/94‑1 (MQ=60)

                                                                   CAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG                            <  SRR4302537.6164670/94‑1 (MQ=60)

                                                                   CAGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG                            >  SRR4302537.2125780/1‑94 (MQ=60)

                                                                    AGTACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGC                           >  SRR4302537.4991367/1‑94 (MQ=60)

                                                                      TACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCT                         <  SRR4302537.2968648/94‑1 (MQ=60)

                                                                       ACGCTCACAGCCGATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTG                        >  SRR4302537.4623910/1‑94 (MQ=60)

                                                                       ACGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGAAATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTG                        <  SRR4302537.2342909/94‑1 (MQ=60)

                                                                        CGCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGC                       >  SRR4302537.5953827/1‑94 (MQ=60)

                                                                         GCTCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCC                      <  SRR4302537.4770772/94‑1 (MQ=60)

                                                                           TCACAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAG                    <  SRR4302537.1807726/94‑1 (MQ=60)

                                                                              CAGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTAC                 >  SRR4302537.841313/1‑94 (MQ=60)

                                                                               AGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACC                <  SRR4302537.4788835/94‑1 (MQ=60)

                                                                               AGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACC                >  SRR4302537.2840315/1‑94 (MQ=60)

                                                                               AGCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACC                <  SRR4302537.6342741/94‑1 (MQ=60)

                                                                                GCCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCA               <  SRR4302537.61712/94‑1 (MQ=60)

                                                                                 CCAATGCCGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCAT              <  SRR4302537.1546005/94‑1 (MQ=60)

                                                                                 CCAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCAT              >  SRR4302537.216375/1‑94 (MQ=60)

                                                                                  CAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATC             >  SRR4302537.5364600/1‑94 (MQ=60)

                                                                                  CAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATC             >  SRR4302537.2872734/1‑94 (MQ=60)

                                                                                  CAATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATC             >  SRR4302537.72467/1‑94 (MQ=60)

                                                                                   AATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCA            <  SRR4302537.920336/94‑1 (MQ=60)

                                                                                   AATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCA            >  SRR4302537.534944/1‑94 (MQ=60)

                                                                                    ATGACGCTGCACCAGTACGGGTGTAGACATTAACCCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCAT           <  SRR4302537.3353746/94‑1 (MQ=60)

                                                                                    ATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCAT           <  SRR4302537.1722490/94‑1 (MQ=60)

                                                                                    ATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCAT           <  SRR4302537.3906723/94‑1 (MQ=60)

                                                                                    ATGACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCAT           <  SRR4302537.2599989/94‑1 (MQ=60)

                                                                                      GACGCTGCACCAGTACGGGTGTAGACATTAACCCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCT         <  SRR4302537.22234/94‑1 (MQ=60)

                                                                                      GACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCT         <  SRR4302537.567787/94‑1 (MQ=60)

                                                                                      GACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCT         >  SRR4302537.1555871/1‑94 (MQ=60)

                                                                                      GACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCT         <  SRR4302537.491261/94‑1 (MQ=60)

                                                                                       ACGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTG        <  SRR4302537.3862832/94‑1 (MQ=60)

                                                                                        CGCTGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAAAATGCCGGCGGTAATGCCCCTGCCAGTACCATCATCTGC       <  SRR4302537.3474900/94‑1 (MQ=60)

                                                                                           TGCACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGA    <  SRR4302537.750638/94‑1 (MQ=60)

                                                                                             CACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATG  >  SRR4302537.443938/1‑94 (MQ=60)

                                                                                             CACCAGTACGGCTGTAGACATTAACCCGGCTGGAAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATG  <  SRR4302537.236266/94‑1 (MQ=60)

ATAACATGATTAATTATGAAACCAGTCGACTGACATAAATCCACAAGGGAGCCGTGACGACAAAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATG  >  NC_000913/2487249‑2487435

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 6 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`