Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,528,223	(C)_5→6	intergenic (‑27/+44)	lig ← / ← zipA	DNA ligase/ZipA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,528,218	1	.	C	97.3%	734.5 / 10.7	219	intergenic (‑22/+49)	lig/zipA	DNA ligase/ZipA
Reads supporting (aligned to +/- strand): ref base . (2/4); new base C (92/121); total (94/125)
Fisher's exact test for biased strand distribution p-value = 7.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 266 total aligned reads displayed.

ACATGATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGT  >  NC_000913/2528126‑2528307

acaTGATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTaaaa‑a                                                                                             <  2:2396249/93‑1 (MQ=255)

  aTGATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc                                                                                          >  2:5057165/1‑93 (MQ=255)

   tGATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑c                                                                                        <  1:4501335/93‑1 (MQ=255)

   tGATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑c                                                                                        >  1:6068597/1‑93 (MQ=255)

    gATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑cc                                                                                       <  2:3668991/93‑1 (MQ=255)

    gATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑cc                                                                                       >  1:2354624/1‑93 (MQ=255)

     aTAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑ccc                                                                                      >  1:5011697/1‑93 (MQ=255)

     aTAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑ccc                                                                                      <  1:1905018/93‑1 (MQ=255)

      tAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑cccc                                                                                     <  2:1063700/93‑2 (MQ=255)

        aaGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑ccccga                                                                                   <  2:3142219/93‑4 (MQ=255)

        aaGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑cc‑ccccga                                                                                   >  2:3238589/1‑90 (MQ=255)

           atatTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACaa                                                                                 <  1:56750/93‑1 (MQ=255)

           atatTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACaa                                                                                 <  2:6087113/93‑1 (MQ=255)

            tatTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAg                                                                                <  2:3938504/93‑1 (MQ=255)

            tatTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAg                                                                                >  2:2301969/1‑93 (MQ=255)

            tatTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAg                                                                                <  1:2098013/93‑1 (MQ=255)

              ttCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCg                                                                              >  1:578170/1‑93 (MQ=255)

              ttCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCg                                                                              >  1:3137196/1‑93 (MQ=255)

                cATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCggg                                                                            <  1:86933/93‑1 (MQ=255)

                cATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCggg                                                                            <  1:1760199/93‑1 (MQ=255)

                 atgatgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCgggg                                                                           <  1:5236925/93‑1 (MQ=255)

                  tgatgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCggggg                                                                          >  2:6341036/1‑93 (MQ=255)

                   gatgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGt                                                                         <  1:538920/93‑1 (MQ=255)

                    atgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGtt                                                                        <  1:5891759/93‑1 (MQ=255)

                     tgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTc                                                                       >  2:4901771/1‑93 (MQ=255)

                     tgGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTc                                                                       >  1:1671240/1‑93 (MQ=255)

                       gCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGa                                                                     <  2:5779762/93‑1 (MQ=255)

                          aaGCGTCGTTCGCATTTCTGACAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAaga                                                                  <  2:5597370/93‑1 (MQ=255)

                          aaGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAaga                                                                  <  1:1028370/93‑1 (MQ=255)

                          aaGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAaga                                                                  >  1:6225019/1‑93 (MQ=255)

                          aaGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAaga                                                                  >  1:1536081/1‑93 (MQ=255)

                            gCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAgagg                                                                <  2:5571861/93‑1 (MQ=255)

                            gCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAgagg                                                                <  2:2515578/93‑1 (MQ=255)

                            gCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAgagg                                                                >  1:5474286/1‑93 (MQ=255)

                            gCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAgagg                                                                <  1:1335685/93‑1 (MQ=255)

                            gCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAgagg                                                                >  2:6195544/1‑93 (MQ=255)

                             cgtcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAgagga                                                               <  2:5288131/93‑1 (MQ=255)

                               tcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGt                                                             <  2:2591648/93‑1 (MQ=255)

                               tcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGt                                                             <  1:1966920/93‑1 (MQ=255)

                               tcgtTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGGTCGAAGAGGAGt                                                             >  2:5722903/1‑93 (MQ=255)

                                  ttCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTaa                                                          <  2:1448204/93‑1 (MQ=255)

                                  ttCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTaa                                                          >  1:36129/1‑93 (MQ=255)

                                  ttCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTaa                                                          <  2:4523982/93‑1 (MQ=255)

                                     gCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAAttt                                                       >  2:1336646/1‑93 (MQ=255)

                                     gCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAAttt                                                       >  2:4314006/1‑93 (MQ=255)

                                       aGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGc                                                     >  2:1309963/1‑93 (MQ=255)

                                        gTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGcc                                                    >  2:415489/1‑93 (MQ=255)

                                            tGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTaa                                                <  1:4927647/93‑1 (MQ=255)

                                            tGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTaa                                                >  1:1995317/1‑93 (MQ=255)

                                            tGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTaa                                                <  2:1129295/93‑1 (MQ=255)

                                             gTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAg                                               <  1:3983196/93‑1 (MQ=255)

                                              tCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑CCACCCGACAAGCGGGGGTTCGACGAGGAGTTAATTTGCCTTAAgt                                              >  1:1111001/1‑93 (MQ=255)

                                                  ttgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTAt                                          <  1:3670020/93‑1 (MQ=255)

                                                  ttgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTAt                                          <  1:219248/93‑1 (MQ=255)

                                                   tgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATc                                         <  2:2866237/93‑1 (MQ=255)

                                                   tgttgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATc                                         <  1:5369082/93‑1 (MQ=255)

                                                     ttgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAg                                       >  2:1606117/1‑93 (MQ=255)

                                                      tgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAgg                                      <  2:518527/93‑1 (MQ=255)

                                                      tgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAgg                                      <  1:2557167/93‑1 (MQ=255)

                                                      tgttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAgg                                      <  2:2225194/93‑1 (MQ=255)

                                                       gttCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGc                                     >  2:294904/1‑93 (MQ=255)

                                                        ttCGATTGATTCCATATCGCACCATCAATGCTAAAATC‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCg                                    <  1:2500346/93‑1 (MQ=255)

                                                         tCGATTGATTCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGt                                   >  1:4200297/1‑93 (MQ=255)

                                                           gattgattCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTg                                 <  2:6033896/93‑1 (MQ=255)

                                                           gattgattCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTg                                 <  1:4449862/93‑1 (MQ=255)

                                                             ttgattCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGc                               >  1:2623085/1‑93 (MQ=255)

                                                              tgattCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCg                              >  1:2863906/1‑93 (MQ=255)

                                                               gattCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGt                             >  1:4311516/1‑93 (MQ=255)

                                                                attCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTc                            <  2:2570474/93‑1 (MQ=255)

                                                                  tCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCtt                          <  2:3071220/93‑1 (MQ=255)

                                                                  tCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCtt                          <  1:3497163/93‑1 (MQ=255)

                                                                  tCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCtt                          >  1:822218/1‑93 (MQ=255)

                                                                  tCCATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCtt                          >  2:2479871/1‑93 (MQ=255)

                                                                    cATATCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTTATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTg                        >  1:964504/1‑93 (MQ=255)

                                                                     atatCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGATCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGa                       >  1:3454759/1‑93 (MQ=255)

                                                                      tatCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGAc                      >  2:1997505/1‑93 (MQ=255)

                                                                      tatCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTCGCGTCTTTGAc                      >  2:4833580/1‑93 (MQ=255)

                                                                        tCGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACtt                    >  1:2561308/1‑93 (MQ=255)

                                                                         cGCACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTc                   <  2:1957381/93‑1 (MQ=255)

                                                                           cACCATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTcgc                 <  2:3345663/93‑1 (MQ=255)

                                                                              cATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGga              <  1:5537898/93‑1 (MQ=255)

                                                                              cATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGga              <  1:3553779/93‑1 (MQ=255)

                                                                              cATCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGga              <  2:1751360/93‑1 (MQ=255)

                                                                               aTCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgat             >  2:5639144/1‑93 (MQ=255)

                                                                               aTCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgat             <  2:1671240/93‑1 (MQ=255)

                                                                                tCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatg            >  2:6443349/1‑93 (MQ=255)

                                                                                tCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatg            >  1:4399572/1‑93 (MQ=255)

                                                                                tCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatg            <  1:4758879/93‑1 (MQ=255)

                                                                                tCAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatg            <  1:5845423/93‑1 (MQ=255)

                                                                                 cAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatga           <  2:476734/93‑1 (MQ=255)

                                                                                 cAATGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatga           <  2:2044426/93‑1 (MQ=255)

                                                                                 cAATACTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatga           <  1:721636/93‑1 (MQ=255)

                                                                                  aaTGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGgatgat          >  2:2723282/1‑93 (MQ=255)

                                                                                   aTGCTAAAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGatgatg         <  2:2850279/93‑1 (MQ=255)

                                                                                     ctaaaaa‑c‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTcc      <  2:6259031/90‑1 (MQ=255)

                                                                                      taaaaa‑c‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCt     <  1:1207805/91‑1 (MQ=255)

                                                                                       aaaaa‑c‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTg    <  1:3065822/92‑1 (MQ=255)

                                                                                        aaaa‑c‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTgg   >  1:5908522/1‑93 (MQ=255)

                                                                                         aaa‑c‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGt  <  2:4601635/93‑1 (MQ=255)

                                                                                         aaa‑c‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGt  >  2:704254/1‑93 (MQ=255)

ACATGATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTAAAA‑A‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGT  >  NC_000913/2528126‑2528307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCA  >  NC_000913/2528130‑2528316

GATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CC‑CCC                                                                                               >  SRR4302537.5046223/1‑94 (MQ=60)

 ATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CC‑CCCC                                                                                              >  SRR4302537.2576012/1‑94 (MQ=60)

 ATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CC‑CCCC                                                                                              <  SRR4302537.1918248/94‑1 (MQ=60)

 ATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CC‑CCCC                                                                                              <  SRR4302537.4583339/94‑1 (MQ=60)

    AAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGAC                                                                                            >  SRR4302537.874460/1‑94 (MQ=60)

     AGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACA                                                                                           >  SRR4302537.5881904/1‑94 (MQ=60)

     AGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACA                                                                                           >  SRR4302537.1599929/1‑94 (MQ=60)

       ATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAG                                                                                         <  SRR4302537.57170/94‑1 (MQ=60)

       ATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAG                                                                                         <  SRR4302537.5968820/94‑1 (MQ=60)

        TATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGC                                                                                        <  SRR4302537.2112811/94‑1 (MQ=60)

         ATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCG                                                                                       >  SRR4302537.582127/1‑94 (MQ=60)

         ATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCG                                                                                       >  SRR4302537.3159216/1‑94 (MQ=60)

          TTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGG                                                                                      <  SRR4302537.4181197/94‑1 (MQ=60)

            CATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGG                                                                                    <  SRR4302537.1772470/94‑1 (MQ=60)

            CATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGG                                                                                    <  SRR4302537.87563/94‑1 (MQ=60)

             ATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGG                                                                                   <  SRR4302537.5272956/94‑1 (MQ=60)

             AGGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTGGTTTGTCGATTGATTCCATATCGCACCATCAATGCTA‑AAACC‑CC‑CCCGACAAGCGGGGG                                                                                   <  SRR4302537.65267/94‑1 (MQ=60)

               GATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTT                                                                                 <  SRR4302537.542620/94‑1 (MQ=60)

               GATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTT                                                                                 <  SRR4302537.1130512/94‑1 (MQ=60)

                ATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTC                                                                                <  SRR4302537.5932185/94‑1 (MQ=60)

                ATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTC                                                                                >  SRR4302537.1041589/1‑94 (MQ=60)

                ATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTC                                                                                >  SRR4302537.1955586/1‑94 (MQ=60)

                ATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTC                                                                                >  SRR4302537.1682944/1‑94 (MQ=60)

                  GGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGGTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGATCGA                                                                              >  SRR4302537.542870/1‑94 (MQ=60)

                    CGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAG                                                                            <  SRR4302537.1758954/94‑1 (MQ=60)

                     GAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGA                                                                           >  SRR4302537.1546810/1‑94 (MQ=60)

                     GAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGA                                                                           >  SRR4302537.6267858/1‑94 (MQ=60)

                     GAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGA                                                                           <  SRR4302537.3369363/94‑1 (MQ=60)

                      AAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAG                                                                          <  SRR4302537.1035451/94‑1 (MQ=60)

                      AAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAG                                                                          <  SRR4302537.3092483/94‑1 (MQ=60)

                      AAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAG                                                                          <  SRR4302537.2848737/94‑1 (MQ=60)

                       AGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGG                                                                         >  SRR4302537.5511645/1‑94 (MQ=60)

                        GCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGA                                                                        <  SRR4302537.1344988/94‑1 (MQ=60)

                        GCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGA                                                                        <  SRR4302537.1583192/94‑1 (MQ=60)

                         CGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAG                                                                       >  SRR4302537.4363674/1‑94 (MQ=60)

                          GTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGT                                                                      >  SRR4302537.2131079/1‑94 (MQ=60)

                          GTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGT                                                                      <  SRR4302537.1779558/94‑1 (MQ=60)

                          GTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGT                                                                      >  SRR4302537.3499947/1‑94 (MQ=60)

                           TCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTT                                                                     <  SRR4302537.1980598/94‑1 (MQ=60)

                           TCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTT                                                                     <  SRR4302537.6006432/94‑1 (MQ=60)

                           TCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTT                                                                     <  SRR4302537.5514724/94‑1 (MQ=60)

                           TCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTT                                                                     <  SRR4302537.2566855/94‑1 (MQ=60)

                            CGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTA                                                                    <  SRR4302537.2750378/94‑1 (MQ=60)

                             GTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAA                                                                   >  SRR4302537.36405/1‑94 (MQ=60)

                               TCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATT                                                                 <  SRR4302537.956345/94‑1 (MQ=60)

                               TCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATT                                                                 <  SRR4302537.35720/94‑1 (MQ=60)

                                CGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTT                                                                >  SRR4302537.5383521/1‑94 (MQ=60)

                                     TTCTGTCAGTTGTTGGTCGATTGATTCCATATCGCACCATCAATGCTAGAAA‑C‑CC‑CCCGCGAAGCGGGGGATCGGAGAGGAGTTAGTTTGCCTT                                                           >  SRR4302537.5588881/1‑94 (MQ=57)

                                       CTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAA                                                         >  SRR4302537.2009189/1‑94 (MQ=60)

                                       CTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAA                                                         <  SRR4302537.5934354/94‑1 (MQ=60)

                                       CTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATAAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAA                                                         <  SRR4302537.5451110/94‑1 (MQ=60)

                                        TGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAG                                                        <  SRR4302537.4961617/94‑1 (MQ=60)

                                         GTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGT                                                       <  SRR4302537.4011083/94‑1 (MQ=60)

                                         GTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CCACCCGACAAGCGGGGGTTCGACGAGGAGTTAATTTGCCTTAAGT                                                       >  SRR4302537.1118674/1‑94 (MQ=60)

                                          TCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTG                                                      >  SRR4302537.2048848/1‑94 (MQ=60)

                                            AGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTA                                                    >  SRR4302537.223375/1‑94 (MQ=60)

                                             GTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTAT                                                   >  SRR4302537.3678149/1‑94 (MQ=60)

                                              TTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATC                                                  <  SRR4302537.775622/94‑1 (MQ=60)

                                              TTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATC                                                  <  SRR4302537.5750497/94‑1 (MQ=60)

                                              TTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATC                                                  >  SRR4302537.1258208/1‑94 (MQ=60)

                                              TTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATC                                                  <  SRR4302537.3695840/94‑1 (MQ=60)

                                              TTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATC                                                  <  SRR4302537.2128317/94‑1 (MQ=60)

                                              TTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATC                                                  <  SRR4302537.220811/94‑1 (MQ=60)

                                               TGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCA                                                 <  SRR4302537.6252046/94‑1 (MQ=60)

                                               TGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCA                                                 <  SRR4302537.5946777/94‑1 (MQ=60)

                                               TGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCA                                                 <  SRR4302537.5405816/94‑1 (MQ=60)

                                                GTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAG                                                <  SRR4302537.768413/94‑1 (MQ=60)

                                                GTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAG                                                <  SRR4302537.4525635/94‑1 (MQ=60)

                                                GTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAG                                                <  SRR4302537.2906700/94‑1 (MQ=60)

                                                GTTGTACGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAG                                                <  SRR4302537.2059571/94‑1 (MQ=60)

                                                 TTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGG                                               <  SRR4302537.1923859/94‑1 (MQ=60)

                                                 TTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGG                                               >  SRR4302537.5839232/1‑94 (MQ=60)

                                                 TTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGG                                               >  SRR4302537.958469/1‑94 (MQ=60)

                                                 TTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGG                                               <  SRR4302537.2406634/94‑1 (MQ=60)

                                                  TGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGC                                              <  SRR4302537.2575093/94‑1 (MQ=60)

                                                  TGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCACGC                                              >  SRR4302537.5000034/1‑94 (MQ=60)

                                                   GTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCG                                             >  SRR4302537.4443983/1‑94 (MQ=60)

                                                    TTCGATTGATTCCATATCGCACCATCAATGCTA‑AAATC‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGT                                            <  SRR4302537.2517939/94‑1 (MQ=60)

                                                    TTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGT                                            >  SRR4302537.4229625/1‑94 (MQ=60)

                                                    TTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGT                                            >  SRR4302537.5420203/1‑94 (MQ=60)

                                                    TTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGT                                            >  SRR4302537.3106429/1‑94 (MQ=60)

                                                     TCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTT                                           >  SRR4302537.3566108/1‑94 (MQ=60)

                                                      CGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTG                                          <  SRR4302537.163850/94‑1 (MQ=60)

                                                       GATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGG                                         <  SRR4302537.4164527/94‑1 (MQ=60)

                                                       GATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGG                                         <  SRR4302537.4368424/94‑1 (MQ=60)

                                                       GATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGG                                         <  SRR4302537.4480594/94‑1 (MQ=60)

                                                        ATTGATTCCATATCGCACCATCAATGCTA‑AAAGC‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGC                                        <  SRR4302537.2548359/94‑1 (MQ=60)

                                                        ATTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGC                                        >  SRR4302537.2641467/1‑94 (MQ=60)

                                                         TTGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCG                                       >  SRR4302537.2883982/1‑94 (MQ=60)

                                                          TGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGT                                      >  SRR4302537.4341480/1‑94 (MQ=60)

                                                          TGATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGT                                      >  SRR4302537.3597760/1‑94 (MQ=60)

                                                           GATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTC                                     >  SRR4302537.6405712/1‑94 (MQ=60)

                                                            ATTCCATATCGCACCATCAATGCTA‑AAACC‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCT                                    <  SRR4302537.1189298/94‑1 (MQ=60)

                                                            ATTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCT                                    <  SRR4302537.5840039/94‑1 (MQ=60)

                                                             TTCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTT                                   >  SRR4302537.827863/1‑94 (MQ=60)

                                                              TCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTT                                  <  SRR4302537.1401572/94‑1 (MQ=60)

                                                              TCCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTT                                  <  SRR4302537.3521904/94‑1 (MQ=60)

                                                               CCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTTATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTG                                 >  SRR4302537.971160/1‑94 (MQ=60)

                                                               CCATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTG                                 >  SRR4302537.628625/1‑94 (MQ=60)

                                                                CATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGATCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGA                                >  SRR4302537.3479194/1‑94 (MQ=60)

                                                                 ATATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGAC                               <  SRR4302537.3812905/94‑1 (MQ=60)

                                                                  TATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACT                              <  SRR4302537.2634177/94‑1 (MQ=60)

                                                                  TATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACT                              <  SRR4302537.2375202/94‑1 (MQ=60)

                                                                   ATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTT                             >  SRR4302537.2579251/1‑94 (MQ=60)

                                                                   ATCGCACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTT                             <  SRR4302537.4814546/94‑1 (MQ=60)

                                                                       CACCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCG                         <  SRR4302537.3627962/94‑1 (MQ=60)

                                                                         CCATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGA                       >  SRR4302537.3199343/1‑94 (MQ=60)

                                                                          CATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGAT                      >  SRR4302537.5103158/1‑94 (MQ=60)

                                                                          CATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGAT                      <  SRR4302537.3578869/94‑1 (MQ=60)

                                                                          CATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGAT                      >  SRR4302537.2624228/1‑94 (MQ=60)

                                                                          CATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGAT                      <  SRR4302537.5575702/94‑1 (MQ=60)

                                                                           ATCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATG                     >  SRR4302537.4429933/1‑94 (MQ=60)

                                                                            TCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGA                    <  SRR4302537.4791746/94‑1 (MQ=60)

                                                                            TCAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGA                    <  SRR4302537.5885504/94‑1 (MQ=60)

                                                                             CAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGAT                   >  SRR4302537.3888572/1‑94 (MQ=60)

                                                                             CAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGAT                   <  SRR4302537.5331838/94‑1 (MQ=60)

                                                                             CAATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGGTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGAT                   >  SRR4302537.5735273/1‑94 (MQ=60)

                                                                             CAATACTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGAT                   <  SRR4302537.726561/94‑1 (MQ=60)

                                                                               ATGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGT                 <  SRR4302537.2007379/94‑1 (MQ=60)

                                                                                TGCTA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTC                <  SRR4302537.4775035/94‑1 (MQ=60)

                                                                                   TA‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTG             <  SRR4302537.1216213/94‑1 (MQ=60)

                                                                                    A‑AAA‑C‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGT           <  SRR4302537.4243503/94‑1 (MQ=60)

                                                                                    A‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGG            <  SRR4302537.3087185/94‑1 (MQ=60)

                                                                                    A‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGG            >  SRR4302537.5949069/1‑94 (MQ=60)

                                                                                    A‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGG            <  SRR4302537.506317/94‑1 (MQ=60)

                                                                                    A‑AAA‑ACCC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGG            <  SRR4302537.1441049/94‑1 (MQ=60)

                                                                                    A‑AAA‑ACCC‑CCCGACAAGCGGGGGATCGCAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGATTTCGCGGATGATGTCCTGG            >  SRR4302537.5238668/1‑94 (MQ=60)

                                                                                        A‑C‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACT        <  SRR4302537.3261420/94‑1 (MQ=60)

                                                                                        A‑C‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACT        >  SRR4302537.3673051/1‑94 (MQ=60)

                                                                                          C‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTC       <  SRR4302537.662293/94‑1 (MQ=60)

                                                                                            CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCG      <  SRR4302537.5979472/94‑1 (MQ=60)

                                                                                            CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCG      <  SRR4302537.4132859/94‑1 (MQ=60)

                                                                                            CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCG      >  SRR4302537.1697348/1‑94 (MQ=60)

                                                                                             C‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGAGTTTGACTTCGCGGATGATGTCCTGGTACTCGC     >  SRR4302537.709421/1‑94 (MQ=60)

                                                                                                 CGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCA  >  SRR4302537.5025950/1‑94 (MQ=60)

GATAAAGATATTCATGATGGCGAAGCGTCGTTCGCAGTTCTGTCAGTTGTTGTTCGATTGATTCCATATCGCACCATCAATGCTA‑AAA‑A‑CC‑CCCGACAAGCGGGGGTTCGAAGAGGAGTTAATTTGCCTTAAGTGTATCAGGCGTTGGCGTCTTTGACTTCGCGGATGATGTCCTGGTACTCGCGCA  >  NC_000913/2528130‑2528316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`