Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,544,643 |
T→C |
L284P (CTG→CCG) |
yfeU → |
putative regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,544,643 | 0 | T | C | 97.2%
| 717.4
/ 6.4
| 218 | L284P (CTG→CCG) | yfeU | putative regulator |
| Reads supporting (aligned to +/- strand): ref base T (3/3); new base C (98/114); total (101/117) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01 |
Only 100 of 223 total aligned reads displayed.
AAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTC > NC_000913/2544553‑2544732
|
aagcggCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCgg > 2:2608654/1‑93 (MQ=255)
gcggcgTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGAt > 2:2946764/1‑93 (MQ=255)
gcggcgTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGAt > 1:6309994/1‑93 (MQ=255)
gcggcgTTAATGGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTTCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGAt < 1:1178078/93‑1 (MQ=255)
gcgTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCaa > 1:5279757/1‑93 (MQ=255)
ggTTAATTGCTTGCGAGCGCAACTGTAAAACGGCTATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGATAAAAAACGCCTGGATCAac < 2:5966304/92‑1 (MQ=255)
cgTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAac < 1:2767153/93‑1 (MQ=255)
gTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAaca > 1:3856807/1‑93 (MQ=255)
gTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAaca > 1:5071978/1‑93 (MQ=255)
ttAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAacac < 1:5465530/93‑1 (MQ=255)
ttAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACACCCGGATCAacac > 1:3687317/1‑93 (MQ=255)
tAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACAcg > 1:2143253/1‑93 (MQ=255)
tAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACAcg > 2:1474674/1‑93 (MQ=255)
tAATTGCTTGCGAGCGCAACTATAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACAcg > 2:4108209/1‑93 (MQ=255)
aTTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACAcggc < 2:3773005/93‑1 (MQ=255)
cttgcGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCt < 1:2598896/93‑1 (MQ=255)
cttgcGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCt < 2:5445452/93‑1 (MQ=255)
cGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTAt > 2:833224/1‑93 (MQ=255)
gAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTAtt < 2:3972609/93‑1 (MQ=255)
aGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTc < 2:3490046/93‑1 (MQ=255)
gcgcAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCg > 1:2701538/1‑93 (MQ=255)
gcgcAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCg > 2:4945824/1‑93 (MQ=255)
gcgcAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCg < 1:1504272/93‑1 (MQ=255)
gcAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTc < 2:2000558/93‑1 (MQ=255)
cAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCa < 2:446338/93‑1 (MQ=255)
cAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCa > 1:186369/1‑93 (MQ=255)
tGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGtt < 1:2066223/93‑1 (MQ=255)
gTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGttt < 1:712162/93‑1 (MQ=255)
gTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGttt < 2:5527732/93‑1 (MQ=255)
aaaaCGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTa < 2:5044849/93‑1 (MQ=255)
aaaaCGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTa > 1:4802718/1‑93 (MQ=255)
aaaCGGTCATTGTGATGGTGCTGAAAAGTCTAGATGACGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAg < 2:2648282/93‑1 (MQ=255)
aaCGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGa < 2:24126/93‑1 (MQ=255)
aaCGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGa > 1:1418222/1‑93 (MQ=255)
ggCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACaa < 1:3539778/93‑1 (MQ=255)
gCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAg < 1:4294325/93‑1 (MQ=255)
ccATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAgg < 1:5528869/93‑1 (MQ=255)
aTTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGaa < 2:449903/93‑1 (MQ=255)
aTTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGaa > 1:1646681/1‑93 (MQ=255)
aTTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGaa < 1:808692/93‑1 (MQ=255)
aTTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGaa < 2:4291263/93‑1 (MQ=255)
ttGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAAt > 2:5729753/1‑93 (MQ=255)
ttGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAAt < 1:3846013/93‑1 (MQ=255)
tgtgATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATa < 1:2363920/93‑1 (MQ=255)
gtgATGGTGCTGAAAGATCGCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATaa < 1:4153296/93‑1 (MQ=255)
gATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAAcc < 2:3086316/93‑1 (MQ=255)
gATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAAcc > 1:6161357/1‑93 (MQ=255)
gATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAAcc > 1:4542394/1‑93 (MQ=255)
tGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCa > 1:3378541/1‑93 (MQ=255)
tGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCa < 1:6333920/93‑1 (MQ=255)
ggTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCGAt < 2:6344109/93‑1 (MQ=255)
ggTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCAt < 2:5324199/93‑1 (MQ=255)
gTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATg < 1:3912839/93‑1 (MQ=255)
gTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATg < 2:2064150/93‑1 (MQ=255)
gTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAAGAACCCATg < 2:6295469/93‑1 (MQ=255)
aaaaaTCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCaaa < 2:331663/93‑1 (MQ=255)
aaaaaTCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCaaa > 1:565318/1‑93 (MQ=255)
aaaaTCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAag < 2:4315867/93‑1 (MQ=255)
aaaaTCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAag < 1:2944357/93‑1 (MQ=255)
aaTCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAagag < 1:2244341/93‑1 (MQ=255)
aTCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAgaga < 1:3733473/93‑1 (MQ=255)
tctcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGAt < 2:5714202/93‑1 (MQ=255)
tctcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGAt < 2:1235814/93‑1 (MQ=255)
tctcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGAt < 2:4645205/93‑1 (MQ=255)
ctcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATc < 2:1955430/93‑1 (MQ=255)
tcGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATca > 1:334065/1‑93 (MQ=255)
tcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATca < 1:4653474/93‑1 (MQ=255)
tcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATca < 1:4941401/93‑1 (MQ=255)
tcGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATca > 2:4814493/1‑93 (MQ=255)
gATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATcagc > 2:920704/1‑93 (MQ=255)
gATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATcagc < 2:4930070/93‑1 (MQ=255)
aTGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATcagca < 1:5972384/93‑1 (MQ=255)
gCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGt < 2:1340430/93‑1 (MQ=255)
gCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGt < 2:3267053/93‑1 (MQ=255)
ccGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTg > 2:1131646/1‑93 (MQ=255)
gCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGaa > 2:1434054/1‑93 (MQ=255)
gCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGaa < 1:1623707/93‑1 (MQ=255)
cAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAAc > 2:1626656/1‑93 (MQ=255)
cAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAAc > 2:1758399/1‑93 (MQ=255)
cAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTGTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAAc < 1:5807146/93‑1 (MQ=255)
gAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACtt > 2:607638/1‑93 (MQ=255)
aGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCt < 2:1270509/93‑1 (MQ=255)
aGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCt < 2:5618389/93‑1 (MQ=255)
gCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTg > 1:993932/1‑93 (MQ=255)
cTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGa < 2:2319451/93‑1 (MQ=255)
tAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGaa < 2:428833/93‑1 (MQ=255)
aaaaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAac < 2:861971/93‑1 (MQ=255)
aaaaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAac > 2:791079/1‑93 (MQ=255)
aaaaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAac < 1:3145080/93‑1 (MQ=255)
aaaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAaca > 1:6178843/1‑93 (MQ=255)
aaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAacac > 1:5936210/1‑93 (MQ=255)
aaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAacac > 1:6214407/1‑93 (MQ=255)
aaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAacac > 2:2779406/1‑93 (MQ=255)
aaaaCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCACTGAACTTCTGAacac > 1:5213014/1‑93 (MQ=255)
aaCGGCCGGATCAACACGGCGGCTGTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCa < 1:2283161/93‑1 (MQ=255)
aCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATGACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCAt < 1:3453964/93‑1 (MQ=255)
cGCCCGGATCACCACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCAtt < 2:6457433/93‑1 (MQ=255)
cGCCCGGAACACCACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACGCCAtt < 2:6238871/93‑1 (MQ=255)
gCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTc > 1:4484592/1‑93 (MQ=255)
gCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTc < 2:1593364/93‑1 (MQ=255)
|
AAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTC > NC_000913/2544553‑2544732
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTTAC > NC_000913/2544550‑2544736
|
CGGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCC < SRR4302537.2775358/94‑1 (MQ=60)
CGGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCC > SRR4302537.2865545/1‑94 (MQ=60)
CGGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCC < SRR4302537.3276234/94‑1 (MQ=60)
GGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCG < SRR4302537.677395/94‑1 (MQ=60)
GGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCG > SRR4302537.394854/1‑94 (MQ=60)
GGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCG < SRR4302537.1684360/94‑1 (MQ=60)
GGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCG < SRR4302537.4003425/94‑1 (MQ=60)
AGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGAT > SRR4302537.6353195/1‑94 (MQ=60)
GCGGCGTTAATGGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTTCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATC < SRR4302537.1186270/94‑1 (MQ=60)
CGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCA < SRR4302537.3881656/94‑1 (MQ=60)
GGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAA > SRR4302537.5316078/1‑94 (MQ=60)
GCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAAC > SRR4302537.3011260/1‑94 (MQ=60)
CGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACA > SRR4302537.3883802/1‑94 (MQ=60)
CGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACA > SRR4302537.4544339/1‑94 (MQ=60)
CGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACA > SRR4302537.5106899/1‑94 (MQ=60)
CGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACA < SRR4302537.2786496/94‑1 (MQ=60)
GTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACAC < SRR4302537.2380036/94‑1 (MQ=60)
GTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACACCCGGATCAACAC > SRR4302537.3713250/1‑94 (MQ=60)
TTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACG < SRR4302537.5502810/94‑1 (MQ=60)
TTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACG > SRR4302537.2158330/1‑94 (MQ=60)
TTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACG > SRR4302537.579075/1‑94 (MQ=60)
TTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACG < SRR4302537.2296882/94‑1 (MQ=60)
GCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCT > SRR4302537.5329056/1‑94 (MQ=60)
GCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCT > SRR4302537.3889271/1‑94 (MQ=60)
CTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTT < SRR4302537.2617074/94‑1 (MQ=60)
CGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATT < SRR4302537.3636164/94‑1 (MQ=60)
AGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCG < SRR4302537.4204813/94‑1 (MQ=60)
AGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCG > SRR4302537.2720403/1‑94 (MQ=60)
AGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCG > SRR4302537.336601/1‑94 (MQ=60)
AGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCG > SRR4302537.792303/1‑94 (MQ=60)
GCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGT < SRR4302537.1514769/94‑1 (MQ=60)
CGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTC < SRR4302537.3411255/94‑1 (MQ=60)
GCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCA > SRR4302537.187694/1‑94 (MQ=60)
AACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGG < SRR4302537.2476102/94‑1 (MQ=60)
CTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTT < SRR4302537.4927999/94‑1 (MQ=60)
TGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTT < SRR4302537.2080734/94‑1 (MQ=60)
GTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTT < SRR4302537.717038/94‑1 (MQ=60)
GTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTT > SRR4302537.185648/1‑94 (MQ=60)
GTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTT > SRR4302537.5232879/1‑94 (MQ=60)
GTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTT > SRR4302537.3861956/1‑94 (MQ=60)
TAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTA > SRR4302537.6354121/1‑94 (MQ=60)
TAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTA > SRR4302537.5310232/1‑94 (MQ=60)
TAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTA > SRR4302537.4835851/1‑94 (MQ=60)
TAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTA < SRR4302537.4439493/94‑1 (MQ=60)
AAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAG > SRR4302537.4849191/1‑94 (MQ=60)
AAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAG < SRR4302537.4360019/94‑1 (MQ=60)
AAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGA > SRR4302537.1428095/1‑94 (MQ=60)
AAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGA < SRR4302537.6225455/94‑1 (MQ=60)
ACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGGTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACA > SRR4302537.3483213/1‑94 (MQ=60)
CGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAA < SRR4302537.5655577/94‑1 (MQ=60)
GGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAG < SRR4302537.3564778/94‑1 (MQ=60)
GCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGG < SRR4302537.4324179/94‑1 (MQ=60)
CCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGA < SRR4302537.5566612/94‑1 (MQ=60)
CATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAA > SRR4302537.1658215/1‑94 (MQ=60)
ATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAAT > SRR4302537.1625356/1‑94 (MQ=60)
ATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAAT < SRR4302537.814239/94‑1 (MQ=60)
TTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATA < SRR4302537.3872938/94‑1 (MQ=60)
TGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAA < SRR4302537.2380589/94‑1 (MQ=60)
TGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAA < SRR4302537.950789/94‑1 (MQ=60)
TGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAA < SRR4302537.2700542/94‑1 (MQ=60)
GTGATGGTGCTGAAAGATCGCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAAC < SRR4302537.4182296/94‑1 (MQ=60)
GTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAAC < SRR4302537.5999256/94‑1 (MQ=60)
GTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAAC > SRR4302537.227534/1‑94 (MQ=60)
TGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACC > SRR4302537.6203757/1‑94 (MQ=60)
TGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACC > SRR4302537.4573834/1‑94 (MQ=60)
GATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCC < SRR4302537.2749720/94‑1 (MQ=60)
ATNGTGNNGAAAAATCTCGATNNCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCA < SRR4302537.5885241/94‑1 (MQ=60)
ATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCA > SRR4302537.3402482/1‑94 (MQ=60)
TGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCAT < SRR4302537.4658298/94‑1 (MQ=60)
TGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCAT < SRR4302537.6377226/94‑1 (MQ=60)
GGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATG > SRR4302537.2788012/1‑94 (MQ=60)
GGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACACATG > SRR4302537.3782212/1‑94 (MQ=60)
GTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGG < SRR4302537.3940195/94‑1 (MQ=60)
TGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAA < SRR4302537.5472712/94‑1 (MQ=60)
GAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAA > SRR4302537.569202/1‑94 (MQ=60)
AAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGA < SRR4302537.2965023/94‑1 (MQ=60)
AAAATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGA < SRR4302537.3281610/94‑1 (MQ=60)
AATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGA < SRR4302537.2260171/94‑1 (MQ=60)
ATCTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGAT < SRR4302537.3759694/94‑1 (MQ=60)
CTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCA > SRR4302537.336376/1‑94 (MQ=60)
CTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCA < SRR4302537.3747135/94‑1 (MQ=60)
CTCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCA < SRR4302537.2162100/94‑1 (MQ=60)
TCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAG < SRR4302537.4975479/94‑1 (MQ=60)
TCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAG < SRR4302537.4685652/94‑1 (MQ=60)
TCGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAG > SRR4302537.4136299/1‑94 (MQ=60)
CGATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGC > SRR4302537.5512875/1‑94 (MQ=60)
GATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCA > SRR4302537.6304411/1‑94 (MQ=60)
ATGCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAG < SRR4302537.6013377/94‑1 (MQ=60)
GCCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTG < SRR4302537.6260384/94‑1 (MQ=60)
CCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGA > SRR4302537.6204731/1‑94 (MQ=60)
CCGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGA > SRR4302537.6012974/1‑94 (MQ=60)
CGCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAA > SRR4302537.1204604/1‑94 (MQ=60)
GCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAAC > SRR4302537.990453/1‑94 (MQ=60)
GCAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAAC < SRR4302537.1635067/94‑1 (MQ=60)
CAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACT > SRR4302537.147816/1‑94 (MQ=60)
CAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACT > SRR4302537.4780919/1‑94 (MQ=60)
CAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACT > SRR4302537.3409407/1‑94 (MQ=60)
CAGAAGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTGTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACT < SRR4302537.5846968/94‑1 (MQ=60)
AGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTG > SRR4302537.1000798/1‑94 (MQ=60)
AGCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTG < SRR4302537.6031130/94‑1 (MQ=60)
GCTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGA > SRR4302537.1734782/1‑94 (MQ=60)
CTAAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAA < SRR4302537.5079055/94‑1 (MQ=60)
AAAAACCGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGATCTTCTGAACA < SRR4302537.1640894/94‑1 (MQ=60)
AAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACA > SRR4302537.6221400/1‑94 (MQ=60)
AAAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACA < SRR4302537.3167151/94‑1 (MQ=60)
AAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACAC > SRR4302537.6257203/1‑94 (MQ=60)
AAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACAC > SRR4302537.5976948/1‑94 (MQ=60)
AAAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCACTGAACTTCTGAACAC > SRR4302537.5248857/1‑94 (MQ=60)
AAAACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCCGCAGTGAACTTCTGAACACC > SRR4302537.2786913/1‑94 (MQ=60)
AACGGCCGGATCAACACGGCGGCTGTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCAT < SRR4302537.2299269/94‑1 (MQ=60)
AACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAATCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCAT > SRR4302537.6516289/1‑94 (MQ=60)
AACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCAT < SRR4302537.2036948/94‑1 (MQ=60)
ACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATGACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATT < SRR4302537.3478389/94‑1 (MQ=60)
ACGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATT < SRR4302537.2080850/94‑1 (MQ=60)
CGCCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTC > SRR4302537.4515616/1‑94 (MQ=60)
CCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTT < SRR4302537.6040364/94‑1 (MQ=60)
CCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTT < SRR4302537.3399913/94‑1 (MQ=60)
CCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTT < SRR4302537.5970111/94‑1 (MQ=60)
CCCGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTT < SRR4302537.3195518/94‑1 (MQ=60)
CGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTTAC < SRR4302537.1414913/94‑1 (MQ=60)
CGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTTAC < SRR4302537.5522123/94‑1 (MQ=60)
|
CGGAAGCGGCGTTAATTGCTTGCGAGCGCAACTGTAAAACGGCCATTGTGATGGTGCTGAAAAATCTCGATGCCGCAGAAGCTAAAAAACGCCTGGATCAACACGGCGGCTTTATTCGTCAGGTTTTAGACAAGGAATAACCCATGGCCAAAGAGATCAGCAGTGAACTTCTGAACACCATTCTTAC > NC_000913/2544550‑2544736
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
