Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,627,257	T→C	A12A (GCA→GCG)	b4538 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,627,257	0	T	C	100.0%	923.2 / NA	261	A12A (GCA→GCG)	b4538	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (147/114); total (147/114)

Only 100 of 279 total aligned reads displayed.

GTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGAT  >  NC_000913/2627167‑2627346

 tAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGcc                                                                                        >  1:4324840/1‑93 (MQ=255)

  aaaTAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCt                                                                                       <  2:3792381/93‑1 (MQ=255)

  aaaTAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCt                                                                                       <  1:6211860/93‑1 (MQ=255)

   aataatTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCtt                                                                                      <  2:4441753/93‑1 (MQ=255)

   aataatTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCtt                                                                                      >  2:1141963/1‑93 (MQ=255)

   aataatTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCtt                                                                                      <  2:4823108/93‑1 (MQ=255)

   aataatTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCtt                                                                                      >  2:6038424/1‑93 (MQ=255)

      aattaaattaACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAAt                                                                                   <  2:1163372/93‑1 (MQ=255)

      aattaaattaACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAAt                                                                                   >  2:64754/1‑93 (MQ=255)

      aattaaattaACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAAt                                                                                   >  1:3321275/1‑93 (MQ=255)

           aattaaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAg                                                                              <  1:5279476/93‑1 (MQ=255)

           aattaaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAg                                                                              >  1:4854287/1‑93 (MQ=255)

           aattaaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAg                                                                              >  1:4570610/1‑93 (MQ=255)

            attaaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGt                                                                             <  1:1009579/93‑1 (MQ=255)

             ttaaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGtg                                                                            >  1:5003935/1‑92 (MQ=255)

             ttaaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGtg                                                                            >  2:1297806/1‑92 (MQ=255)

               aaCTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGcc                                                                          >  1:1814971/1‑93 (MQ=255)

                  ttCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTc                                                                       >  2:5350776/1‑93 (MQ=255)

                  ttCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTc                                                                       <  1:2304242/93‑1 (MQ=255)

                   tCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTcc                                                                      <  1:1481213/93‑1 (MQ=255)

                   tCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTcc                                                                      <  1:5770861/93‑1 (MQ=255)

                    ccATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCca                                                                     <  1:828388/93‑1 (MQ=255)

                    ccATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCca                                                                     <  1:5189801/93‑1 (MQ=255)

                      aTAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcaca                                                                   >  2:1983195/1‑93 (MQ=255)

                      aTAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcaca                                                                   <  1:248920/93‑1 (MQ=255)

                      aTAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcaca                                                                   >  2:3980257/1‑93 (MQ=255)

                      aTAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCcaca                                                                   >  2:1785981/1‑93 (MQ=255)

                       tAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAg                                                                  <  1:42732/93‑1 (MQ=255)

                       tAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAg                                                                  <  2:371500/93‑1 (MQ=255)

                       tAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAg                                                                  <  2:672542/93‑1 (MQ=255)

                          cATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGt                                                               <  2:5667089/93‑1 (MQ=255)

                           aTTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTg                                                              <  2:4642599/93‑1 (MQ=255)

                           aTTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTg                                                              <  2:5567568/93‑1 (MQ=255)

                           aTTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTg                                                              <  1:5616490/93‑1 (MQ=255)

                              aaaaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGa                                                           <  1:3432374/93‑1 (MQ=255)

                              aaaaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGa                                                           <  2:5212441/93‑1 (MQ=255)

                                aaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACa                                                         <  1:785575/93‑1 (MQ=255)

                                aaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACa                                                         <  1:6411162/93‑1 (MQ=255)

                                aaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACa                                                         <  2:4537278/93‑1 (MQ=255)

                                aaTATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACa                                                         >  2:6147446/1‑93 (MQ=255)

                                 atatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGCCAt                                                        >  1:4007264/1‑93 (MQ=255)

                                 atatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACAt                                                        <  1:5434195/93‑1 (MQ=255)

                                  tatGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATa                                                       >  2:1660576/1‑93 (MQ=255)

                                   atGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATAc                                                      >  2:2595047/1‑93 (MQ=255)

                                     gTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACtt                                                    >  2:2401749/1‑93 (MQ=255)

                                      tATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTc                                                   <  1:1394369/93‑1 (MQ=255)

                                      tATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTc                                                   >  1:4167336/1‑93 (MQ=255)

                                         ccACTGACGCTTTTTTACATAACGGAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAg                                                >  2:1918300/1‑93 (MQ=255)

                                         ccACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAg                                                >  2:2203430/1‑93 (MQ=255)

                                          cACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAgg                                               >  2:1518414/1‑93 (MQ=255)

                                            cTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGaa                                             >  1:362713/1‑93 (MQ=255)

                                             tGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAc                                            >  2:2484537/1‑93 (MQ=255)

                                             tGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAc                                            <  2:334273/93‑1 (MQ=255)

                                              gACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAcc                                           <  1:6335913/93‑1 (MQ=255)

                                              gACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAcc                                           >  2:5937826/1‑93 (MQ=255)

                                               aCGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCt                                          <  2:4176077/93‑1 (MQ=255)

                                               aCGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCt                                          <  2:1887421/93‑1 (MQ=255)

                                                  cTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCtttt                                       >  2:5393885/1‑93 (MQ=255)

                                                   ttttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtg                                      >  2:5807671/1‑93 (MQ=255)

                                                    tttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgt                                     <  2:3527531/93‑1 (MQ=255)

                                                    tttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgg                                     >  1:370437/1‑92 (MQ=255)

                                                     ttttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgtg                                    <  1:4024185/93‑1 (MQ=255)

                                                      tttACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTtgtgg                                   <  1:566085/93‑2 (MQ=255)

                                                        tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                 >  1:1521422/1‑93 (MQ=255)

                                                        tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                 <  2:753010/93‑1 (MQ=255)

                                                         aCATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTc                                >  2:3150857/1‑93 (MQ=255)

                                                            tAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAgg                             >  2:5448457/1‑93 (MQ=255)

                                                            tAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAgg                             >  1:278062/1‑93 (MQ=255)

                                                             aaCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGc                            >  2:5037669/1‑93 (MQ=255)

                                                             aaCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGc                            >  1:4730363/1‑93 (MQ=255)

                                                             aaCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGc                            <  1:3287210/93‑1 (MQ=255)

                                                               cGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCaa                          >  2:932873/1‑93 (MQ=255)

                                                                gaagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAc                         <  2:2936902/93‑1 (MQ=255)

                                                                 aagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAcc                        >  2:4089661/1‑93 (MQ=255)

                                                                 aagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAcc                        >  2:2850456/1‑93 (MQ=255)

                                                                   gaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAg                      >  1:6069313/1‑93 (MQ=255)

                                                                   gaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAg                      <  1:3189319/93‑1 (MQ=255)

                                                                    aaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGt                     <  1:671059/93‑1 (MQ=255)

                                                                    aaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGt                     >  1:4528692/1‑93 (MQ=255)

                                                                     aTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTa                    >  2:5858840/1‑93 (MQ=255)

                                                                      ttGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAt                   <  2:6240006/93‑1 (MQ=255)

                                                                        gACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGc                 >  2:876096/1‑93 (MQ=255)

                                                                        gACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGc                 >  1:4519174/1‑93 (MQ=255)

                                                                         aCCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCg                >  2:4921730/1‑93 (MQ=255)

                                                                          ccATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGa               >  1:3750173/1‑93 (MQ=255)

                                                                            aTTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaa             >  1:2650952/1‑93 (MQ=255)

                                                                             ttttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaaa            <  2:3255825/93‑1 (MQ=255)

                                                                             ttttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaaa            >  1:298424/1‑93 (MQ=255)

                                                                              tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc           <  2:3186215/93‑1 (MQ=255)

                                                                               ttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACg          <  2:6004291/93‑1 (MQ=255)

                                                                                 gTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGac        >  1:5874175/1‑93 (MQ=255)

                                                                                  tCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGaca       <  2:4674056/93‑1 (MQ=255)

                                                                                   ccTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGacac      >  1:3852810/1‑93 (MQ=255)

                                                                                   ccTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGacac      >  1:5033795/1‑93 (MQ=255)

                                                                                     tgttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCg    >  1:3208450/1‑93 (MQ=255)

                                                                                      gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa   <  1:1631335/93‑1 (MQ=255)

                                                                                      gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa   <  1:133066/93‑1 (MQ=255)

                                                                                      gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa   >  1:1226390/1‑93 (MQ=255)

                                                                                       ttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAt  <  2:6427585/93‑1 (MQ=255)

                                                                                       ttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAt  <  1:1261554/93‑1 (MQ=255)

GTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGAT  >  NC_000913/2627167‑2627346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTGTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAA  >  NC_000913/2627164‑2627350

ATTGTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGC                                                                                               >  SRR4302537.237679/1‑94 (MQ=60)

ATTGTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGC                                                                                               >  SRR4302537.3667210/1‑94 (MQ=60)

 TTGTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCG                                                                                              <  SRR4302537.6148628/94‑1 (MQ=60)

  TGTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGC                                                                                             >  SRR4302537.1633161/1‑94 (MQ=60)

   GTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCC                                                                                            >  SRR4302537.5570658/1‑94 (MQ=60)

   GTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCC                                                                                            >  SRR4302537.4354909/1‑94 (MQ=60)

     AAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTT                                                                                          <  SRR4302537.6254648/94‑1 (MQ=60)

      AATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTA                                                                                         >  SRR4302537.1268304/1‑94 (MQ=60)

      AATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTA                                                                                         <  SRR4302537.5216468/94‑1 (MQ=60)

      AATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTA                                                                                         >  SRR4302537.4059290/1‑94 (MQ=60)

        TAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAAT                                                                                       >  SRR4302537.3344768/1‑94 (MQ=60)

        TAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAAT                                                                                       >  SRR4302537.1514383/1‑94 (MQ=60)

         AATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATG                                                                                      <  SRR4302537.1263396/94‑1 (MQ=60)

           TTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTA                                                                                    >  SRR4302537.1378916/1‑94 (MQ=60)

             AAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAG                                                                                  >  SRR4302537.4887778/1‑94 (MQ=60)

             AAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAG                                                                                  >  SRR4302537.4602244/1‑94 (MQ=60)

             AAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAG                                                                                  >  SRR4302537.4827567/1‑94 (MQ=60)

              AATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGT                                                                                 >  SRR4302537.850901/1‑94 (MQ=60)

              AATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGT                                                                                 <  SRR4302537.5315795/94‑1 (MQ=60)

              AATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGT                                                                                 <  SRR4302537.6386446/94‑1 (MQ=60)

               ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTG                                                                                <  SRR4302537.1016541/94‑1 (MQ=60)

               ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTG                                                                                >  SRR4302537.4000655/1‑94 (MQ=60)

               ATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTG                                                                                >  SRR4302537.5038400/1‑94 (MQ=60)

                 TAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCC                                                                              >  SRR4302537.1827622/1‑94 (MQ=60)

                 TAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCC                                                                              >  SRR4302537.6119671/1‑94 (MQ=60)

                 TAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCC                                                                              <  SRR4302537.2702372/94‑1 (MQ=60)

                  AACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCG                                                                             >  SRR4302537.2069629/1‑94 (MQ=60)

                    CTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTC                                                                           >  SRR4302537.3349460/1‑94 (MQ=60)

                    CTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTC                                                                           >  SRR4302537.3425233/1‑94 (MQ=60)

                     TTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCC                                                                          <  SRR4302537.2320505/94‑1 (MQ=60)

                     TTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCC                                                                          >  SRR4302537.3769998/1‑94 (MQ=60)

                      TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                         <  SRR4302537.1491515/94‑1 (MQ=60)

                      TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                         <  SRR4302537.5810416/94‑1 (MQ=60)

                      TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                         <  SRR4302537.4739273/94‑1 (MQ=60)

                      TCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCA                                                                         <  SRR4302537.4597924/94‑1 (MQ=60)

                       CCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCAC                                                                        <  SRR4302537.5225495/94‑1 (MQ=60)

                       CCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCAC                                                                        <  SRR4302537.834062/94‑1 (MQ=60)

                        CATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACA                                                                       <  SRR4302537.523064/94‑1 (MQ=60)

                         ATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAG                                                                      <  SRR4302537.250692/94‑1 (MQ=60)

                          TAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGC                                                                     <  SRR4302537.43051/94‑1 (MQ=60)

                          TAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGC                                                                     <  SRR4302537.574029/94‑1 (MQ=60)

                           AACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCG                                                                    >  SRR4302537.4293643/1‑94 (MQ=60)

                           AACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCG                                                                    <  SRR4302537.1091242/94‑1 (MQ=60)

                           AACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCG                                                                    <  SRR4302537.6468408/94‑1 (MQ=60)

                             CATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTG                                                                  >  SRR4302537.4041416/1‑94 (MQ=60)

                              ATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGG                                                                 >  SRR4302537.3143366/1‑94 (MQ=60)

                              ATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGG                                                                 <  SRR4302537.5654894/94‑1 (MQ=60)

                               TTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGG                                                                <  SRR4302537.1503868/94‑1 (MQ=60)

                                TAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGA                                                               <  SRR4302537.6262179/94‑1 (MQ=60)

                                 AAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGAC                                                              >  SRR4302537.1631797/1‑94 (MQ=60)

                                 AAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGAC                                                              <  SRR4302537.3456668/94‑1 (MQ=60)

                                   AATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGCCAT                                                            >  SRR4302537.4035309/1‑94 (MQ=60)

                                   AATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACAT                                                            <  SRR4302537.6454780/94‑1 (MQ=60)

                                   AATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACAT                                                            <  SRR4302537.790968/94‑1 (MQ=60)

                                    ATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATA                                                           >  SRR4302537.3848904/1‑94 (MQ=60)

                                    ATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATA                                                           <  SRR4302537.5471263/94‑1 (MQ=60)

                                    ATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATA                                                           >  SRR4302537.6033458/1‑94 (MQ=60)

                                     TATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATAC                                                          <  SRR4302537.2997713/94‑1 (MQ=60)

                                      ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                         >  SRR4302537.433944/1‑94 (MQ=60)

                                      ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                         <  SRR4302537.2454734/94‑1 (MQ=60)

                                      ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                         >  SRR4302537.3257624/1‑94 (MQ=60)

                                      ATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACT                                                         >  SRR4302537.1457492/1‑94 (MQ=60)

                                        GTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTC                                                       >  SRR4302537.4196442/1‑94 (MQ=60)

                                         TATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCA                                                      <  SRR4302537.1404092/94‑1 (MQ=60)

                                           TCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAG                                                    <  SRR4302537.5045856/94‑1 (MQ=60)

                                             CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                  >  SRR4302537.713395/1‑94 (MQ=60)

                                             CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                  >  SRR4302537.4346836/1‑94 (MQ=60)

                                             CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                  >  SRR4302537.6319823/1‑94 (MQ=60)

                                             CACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGA                                                  >  SRR4302537.5031827/1‑94 (MQ=60)

                                              ACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAA                                                 >  SRR4302537.3343491/1‑94 (MQ=60)

                                              ACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAA                                                 >  SRR4302537.2759236/1‑94 (MQ=60)

                                              ACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAA                                                 >  SRR4302537.365235/1‑94 (MQ=60)

                                               CTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAAC                                                <  SRR4302537.5715393/94‑1 (MQ=60)

                                                TGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACC                                               >  SRR4302537.3089864/1‑94 (MQ=60)

                                                 GACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCT                                              >  SRR4302537.4243086/1‑94 (MQ=60)

                                                 GACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCT                                              <  SRR4302537.6379225/94‑1 (MQ=60)

                                                   CGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTT                                            <  SRR4302537.4558078/94‑1 (MQ=60)

                                                   CGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTT                                            >  SRR4302537.4177642/1‑94 (MQ=60)

                                                   CGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTT                                            <  SRR4302537.2958250/94‑1 (MQ=60)

                                                   CGCTTTTTTACATAACGAAGAATTGACCATCTTGGCCTGTTGCGCCATCATGTAAGTGCCGTCCACAGCGTAGGACATACTTTCAGGAACCTTT                                            >  SRR4302537.176565/1‑94 (MQ=53)

                                                      TTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGT                                         >  SRR4302537.3472248/1‑94 (MQ=60)

                                                      TTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGT                                         >  SRR4302537.3812542/1‑94 (MQ=60)

                                                      TTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGG                                         >  SRR4302537.373008/1‑94 (MQ=60)

                                                        TTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGG                                       <  SRR4302537.4052358/94‑1 (MQ=60)

                                                         TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGTGACATACTTCAAGGAACCTTTTGTGGG                                      <  SRR4302537.5651382/94‑1 (MQ=60)

                                                         TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                      <  SRR4302537.569974/94‑1 (MQ=60)

                                                         TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                      <  SRR4302537.5870217/94‑1 (MQ=60)

                                                         TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                      <  SRR4302537.812469/94‑1 (MQ=60)

                                                         TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                      >  SRR4302537.692806/1‑94 (MQ=60)

                                                          TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                     >  SRR4302537.3213160/1‑94 (MQ=60)

                                                          TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                     >  SRR4302537.1532046/1‑94 (MQ=60)

                                                          TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                     >  SRR4302537.6457987/1‑94 (MQ=60)

                                                          TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGCACATACTTCAAGGAACCTTTTGTGGGT                                     <  SRR4302537.5405060/94‑1 (MQ=60)

                                                             CATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAG                                  <  SRR4302537.3764909/94‑1 (MQ=60)

                                                             CATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAG                                  <  SRR4302537.2553002/94‑1 (MQ=60)

                                                              ATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGG                                 >  SRR4302537.280004/1‑94 (MQ=60)

                                                               TAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGC                                >  SRR4302537.4763048/1‑94 (MQ=60)

                                                                AACGAAGAATTGACCATTTTGTCCTGTTGCTCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                               <  SRR4302537.329324/94‑1 (MQ=60)

                                                                AACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                               <  SRR4302537.3310443/94‑1 (MQ=60)

                                                                AACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                               >  SRR4302537.1778284/1‑94 (MQ=60)

                                                                  CGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAC                             >  SRR4302537.5021400/1‑94 (MQ=60)

                                                                   GAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACC                            >  SRR4302537.5201468/1‑94 (MQ=60)

                                                                    AAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCA                           <  SRR4302537.2628993/94‑1 (MQ=60)

                                                                     AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                          >  SRR4302537.4795419/1‑94 (MQ=60)

                                                                     AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                          >  SRR4302537.6385454/1‑94 (MQ=60)

                                                                     AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                          <  SRR4302537.5404222/94‑1 (MQ=60)

                                                                     AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                          >  SRR4302537.6111013/1‑94 (MQ=60)

                                                                      GAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGT                         <  SRR4302537.3211750/94‑1 (MQ=60)

                                                                      GAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGT                         >  SRR4302537.4560050/1‑94 (MQ=60)

                                                                       AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                        >  SRR4302537.3718346/1‑94 (MQ=60)

                                                                       AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                        <  SRR4302537.675649/94‑1 (MQ=60)

                                                                       AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                        <  SRR4302537.390844/94‑1 (MQ=60)

                                                                        ATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAT                       <  SRR4302537.3550900/94‑1 (MQ=60)

                                                                        ATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAT                       >  SRR4302537.5960559/1‑94 (MQ=60)

                                                                         TTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATG                      <  SRR4302537.3328645/94‑1 (MQ=60)

                                                                          TGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGC                     >  SRR4302537.4550433/1‑94 (MQ=60)

                                                                            ACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGA                   >  SRR4302537.3776508/1‑94 (MQ=60)

                                                                              CATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAA                 >  SRR4302537.2669495/1‑94 (MQ=60)

                                                                               ATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAA                <  SRR4302537.5902501/94‑1 (MQ=60)

                                                                               ATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAA                >  SRR4302537.300504/1‑94 (MQ=60)

                                                                                TTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAC               <  SRR4302537.129066/94‑1 (MQ=60)

                                                                                TTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAC               >  SRR4302537.4487728/1‑94 (MQ=60)

                                                                                 TTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACG              <  SRR4302537.5696415/94‑1 (MQ=60)

                                                                                   TGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGAC            >  SRR4302537.5914473/1‑94 (MQ=60)

                                                                                    GTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACA           <  SRR4302537.5249255/94‑1 (MQ=60)

                                                                                     TCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAC          >  SRR4302537.3879784/1‑94 (MQ=60)

                                                                                     TCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAC          >  SRR4302537.5068449/1‑94 (MQ=60)

                                                                                      CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC         <  SRR4302537.1654042/94‑1 (MQ=60)

                                                                                      CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC         >  SRR4302537.4520853/1‑94 (MQ=60)

                                                                                      CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC         <  SRR4302537.1919530/94‑1 (MQ=60)

                                                                                      CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC         <  SRR4302537.1400700/94‑1 (MQ=60)

                                                                                       CTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCG        >  SRR4302537.4632725/1‑94 (MQ=60)

                                                                                       CTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCG        >  SRR4302537.3231008/1‑94 (MQ=60)

                                                                                        TGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGA       >  SRR4302537.1234918/1‑94 (MQ=60)

                                                                                         GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT      <  SRR4302537.134008/94‑1 (MQ=60)

                                                                                         GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT      <  SRR4302537.1642762/94‑1 (MQ=60)

                                                                                         GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT      >  SRR4302537.1312369/1‑94 (MQ=60)

                                                                                         GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT      <  SRR4302537.4562542/94‑1 (MQ=60)

                                                                                          TTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATT     <  SRR4302537.1270328/94‑1 (MQ=60)

                                                                                             CGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAA  >  SRR4302537.6237621/1‑94 (MQ=60)

ATTGTAAATAATTAAATTAACTTCCATAACATTAAAATATGTATCCACTGACGCTTTTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAA  >  NC_000913/2627164‑2627350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`