Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,627,313 A→G S2G (AGT→GGT)  b2504 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,627,3130AG100.0% 948.6 / NA 270S2G (AGT→GGT) b2504hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (119/151);  total (119/151)

Only 100 of 272 total aligned reads displayed.

TACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGC  >  NC_000913/2627223‑2627402
                                                                                          |                                                                                         
tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                                                                         >  1:3190723/1‑93 (MQ=255)
tACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGt                                                                                         <  2:5101667/93‑1 (MQ=255)
 aCATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTc                                                                                        >  2:4892021/1‑93 (MQ=255)
   aTAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAg                                                                                      >  2:4521519/1‑93 (MQ=255)
    tAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAgg                                                                                     <  2:4392334/93‑1 (MQ=255)
    tAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAgg                                                                                     >  1:278062/1‑93 (MQ=255)
    tAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAgg                                                                                     >  2:5448457/1‑93 (MQ=255)
     aaCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGc                                                                                    <  1:3287210/93‑1 (MQ=255)
      aCGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCa                                                                                   >  2:3685049/1‑93 (MQ=255)
        gaagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAc                                                                                 >  1:4987031/1‑93 (MQ=255)
        gaagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAc                                                                                 <  2:2936902/93‑1 (MQ=255)
         aagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAcc                                                                                >  2:4089661/1‑93 (MQ=255)
         aagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAcc                                                                                <  1:2610731/93‑1 (MQ=255)
         aagaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAcc                                                                                >  2:2850456/1‑93 (MQ=255)
           gaaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAg                                                                              >  1:6342123/1‑93 (MQ=255)
            aaTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGt                                                                             <  1:671059/93‑1 (MQ=255)
             aTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTa                                                                            >  2:5858840/1‑93 (MQ=255)
             aTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTa                                                                            >  1:3692361/1‑93 (MQ=255)
             aTTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTa                                                                            <  1:3525959/93‑1 (MQ=255)
              ttGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAt                                                                           >  2:3169426/1‑93 (MQ=255)
              ttGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAt                                                                           >  1:5919937/1‑93 (MQ=255)
                gACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGc                                                                         >  2:876096/1‑93 (MQ=255)
                  ccATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGa                                                                       >  1:3750173/1‑93 (MQ=255)
                   cATTTTGTCCTGTGGCGCCTTAATGTAAGTGCCGTCCGCAGCGTGGGACATACTTCAAGGACCCTTTTGTGGGTCAGGCAACCAGTATGCGaa                                                                      <  2:2238663/93‑1 (MQ=255)
                    aTTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaa                                                                     <  1:5862301/93‑1 (MQ=255)
                     ttttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaaa                                                                    >  1:298424/1‑93 (MQ=255)
                     ttttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGaaaa                                                                    <  1:128152/93‑1 (MQ=255)
                      tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                                                                   <  2:5424393/93‑1 (MQ=255)
                      tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                                                                   <  1:5657692/93‑1 (MQ=255)
                      tttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAc                                                                   <  2:3186215/93‑1 (MQ=255)
                       ttGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACg                                                                  <  2:6004291/93‑1 (MQ=255)
                         gTCCTGTTTCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGac                                                                >  2:6284649/1‑93 (MQ=255)
                         gTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGac                                                                <  2:5380223/93‑1 (MQ=255)
                         gTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGac                                                                <  1:5213408/93‑1 (MQ=255)
                          tCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGaca                                                               <  2:4674056/93‑1 (MQ=255)
                           ccTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGacac                                                              >  1:3852810/1‑93 (MQ=255)
                           ccTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGacac                                                              <  1:1906288/93‑1 (MQ=255)
                           ccTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGacac                                                              <  1:1390999/93‑1 (MQ=255)
                            cTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAcc                                                             >  1:4489795/1‑93 (MQ=255)
                              gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa                                                           <  1:4531167/93‑1 (MQ=255)
                              gttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGa                                                           <  1:133066/93‑1 (MQ=255)
                               ttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAt                                                          <  2:6427585/93‑1 (MQ=255)
                               ttgcGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAt                                                          >  1:1303308/1‑93 (MQ=255)
                                   gCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTaa                                                      >  1:6194930/1‑93 (MQ=255)
                                     cTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACa                                                    >  2:1265542/1‑93 (MQ=255)
                                      ttAATGTAAGTGCCGTCCACAGCGTGGGAGATACTTCAAGGAACTTTTTGTGGGTCAGGTAAGCAGTATGCGAAAACGGCACCGATTTAACAg                                                   <  2:3593568/93‑1 (MQ=255)
                                       tAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGt                                                  <  1:5116852/93‑1 (MQ=255)
                                           gTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCa                                              >  2:4136696/1‑93 (MQ=255)
                                            tAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAt                                             <  2:1798782/93‑1 (MQ=255)
                                               gtgccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGAc                                          <  1:123799/90‑1 (MQ=255)
                                               gtgccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGAc                                          >  2:1792071/4‑93 (MQ=255)
                                                tgccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGAcc                                         <  1:4325865/91‑1 (MQ=255)
                                                 gccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGAccc                                        <  2:2371624/92‑1 (MQ=255)
                                                 gccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGAccc                                        >  1:791001/2‑93 (MQ=255)
                                                 gccGTCCACAGCGTGGGACATACGTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGAccc                                        >  2:5199731/2‑93 (MQ=255)
                                                  ccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCg                                       <  1:1173055/93‑1 (MQ=255)
                                                  ccGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCg                                       >  1:1570906/1‑93 (MQ=255)
                                                   cGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCga                                      >  2:569283/1‑92 (MQ=255)
                                                     tCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTAt                                    <  1:2529929/93‑1 (MQ=255)
                                                     tCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTAt                                    <  2:314144/93‑1 (MQ=255)
                                                      ccACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATc                                   <  1:1656840/93‑1 (MQ=255)
                                                      ccACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATc                                   <  2:3549852/93‑1 (MQ=255)
                                                        acaGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGt                                 >  1:4883002/1‑93 (MQ=255)
                                                          aGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTAc                               <  1:3550350/93‑1 (MQ=255)
                                                           gCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACt                              <  1:4139074/93‑1 (MQ=255)
                                                           gCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACt                              <  1:4117385/93‑1 (MQ=255)
                                                              tGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCt                           >  2:1726470/1‑93 (MQ=255)
                                                              tGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCt                           <  1:1832686/93‑1 (MQ=255)
                                                              tGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCt                           >  1:4521175/1‑93 (MQ=255)
                                                               gggACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCtc                          <  1:6222918/93‑1 (MQ=255)
                                                               gggACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCtc                          <  1:2265190/93‑1 (MQ=255)
                                                                  aCATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCtcatc                       <  2:3972844/93‑1 (MQ=255)
                                                                  aCATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCtcatc                       <  2:1935878/93‑1 (MQ=255)
                                                                    aTACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAg                     <  2:5094008/93‑1 (MQ=255)
                                                                     tACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGc                    >  2:3253762/1‑93 (MQ=255)
                                                                     tACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGc                    <  2:1026985/93‑1 (MQ=255)
                                                                     tACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGc                    >  2:5730585/1‑93 (MQ=255)
                                                                       cTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCtt                  <  1:348756/93‑1 (MQ=255)
                                                                          cAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAt               <  2:2049932/93‑1 (MQ=255)
                                                                           aaGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtc              <  1:1518414/93‑1 (MQ=255)
                                                                           aaGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtc              <  2:5494284/93‑1 (MQ=255)
                                                                           aaGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtc              >  1:5371724/1‑93 (MQ=255)
                                                                            aGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtct             <  1:4089661/93‑1 (MQ=255)
                                                                            aGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtct             <  1:5477309/93‑1 (MQ=255)
                                                                            aGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtct             <  1:2815277/93‑1 (MQ=255)
                                                                             ggAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtctt            >  2:2103168/1‑93 (MQ=255)
                                                                               aaCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttct          <  1:6085545/93‑1 (MQ=255)
                                                                               aaCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttct          >  2:5010026/1‑93 (MQ=255)
                                                                               aaCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttct          >  2:431971/1‑93 (MQ=255)
                                                                               aaCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACAGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttct          >  2:1382963/1‑93 (MQ=255)
                                                                                aCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttctt         <  1:809991/93‑1 (MQ=255)
                                                                                aCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttctt         >  2:1531778/1‑93 (MQ=255)
                                                                                 ccTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttcttc        <  2:2527320/93‑1 (MQ=255)
                                                                                  cTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAtcttcttct       <  1:4725860/93‑1 (MQ=255)
                                                                                   ttttGTGGGTCAGGCAACCAGTATGCGAGAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATcttcttctt      >  2:3856586/1‑93 (MQ=255)
                                                                                   ttttGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATcttcttctt      >  2:4734941/1‑93 (MQ=255)
                                                                                     ttGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTg    >  1:5812084/1‑93 (MQ=255)
                                                                                      tgtgGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTgg   <  1:1084027/93‑1 (MQ=255)
                                                                                       gtgGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGc  <  1:2169755/93‑1 (MQ=255)
                                                                                       gtgGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGc  <  2:6178478/93‑1 (MQ=255)
                                                                                          |                                                                                         
TACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGC  >  NC_000913/2627223‑2627402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCGT  >  NC_000913/2627220‑2627405
                                                                                             |                                                                                            
TTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGG                                                                                              <  SRR4302537.4052358/94‑1 (MQ=60)
 TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGTGACATACTTCAAGGAACCTTTTGTGGG                                                                                             <  SRR4302537.5651382/94‑1 (MQ=60)
 TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                                                             <  SRR4302537.812469/94‑1 (MQ=60)
 TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                                                             >  SRR4302537.692806/1‑94 (MQ=60)
 TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                                                             <  SRR4302537.569974/94‑1 (MQ=60)
 TTTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGG                                                                                             <  SRR4302537.5870217/94‑1 (MQ=60)
  TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                                                                            >  SRR4302537.6457987/1‑94 (MQ=60)
  TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                                                                            >  SRR4302537.3213160/1‑94 (MQ=60)
  TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGT                                                                                            >  SRR4302537.1532046/1‑94 (MQ=60)
  TTACATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGCACATACTTCAAGGAACCTTTTGTGGGT                                                                                            <  SRR4302537.5405060/94‑1 (MQ=60)
     CATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAG                                                                                         <  SRR4302537.2553002/94‑1 (MQ=60)
     CATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAG                                                                                         <  SRR4302537.3764909/94‑1 (MQ=60)
      ATAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGG                                                                                        >  SRR4302537.280004/1‑94 (MQ=60)
       TAACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGC                                                                                       >  SRR4302537.4763048/1‑94 (MQ=60)
        AACGAAGAATTGACCATTTTGTCCTGTTGCTCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                                                                                      <  SRR4302537.329324/94‑1 (MQ=60)
        AACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                                                                                      >  SRR4302537.1778284/1‑94 (MQ=60)
        AACGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCA                                                                                      <  SRR4302537.3310443/94‑1 (MQ=60)
          CGAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAAC                                                                                    >  SRR4302537.5021400/1‑94 (MQ=60)
           GAAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACC                                                                                   >  SRR4302537.5201468/1‑94 (MQ=60)
            AAGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCA                                                                                  <  SRR4302537.2628993/94‑1 (MQ=60)
             AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                                                                 <  SRR4302537.5404222/94‑1 (MQ=60)
             AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                                                                 >  SRR4302537.6385454/1‑94 (MQ=60)
             AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                                                                 >  SRR4302537.4795419/1‑94 (MQ=60)
             AGAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAG                                                                                 >  SRR4302537.6111013/1‑94 (MQ=60)
              GAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGT                                                                                <  SRR4302537.3211750/94‑1 (MQ=60)
              GAATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGT                                                                                >  SRR4302537.4560050/1‑94 (MQ=60)
               AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                                                                               >  SRR4302537.3718346/1‑94 (MQ=60)
               AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                                                                               <  SRR4302537.390844/94‑1 (MQ=60)
               AATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTA                                                                               <  SRR4302537.675649/94‑1 (MQ=60)
                ATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAT                                                                              <  SRR4302537.3550900/94‑1 (MQ=60)
                ATTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTAT                                                                              >  SRR4302537.5960559/1‑94 (MQ=60)
                 TTGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATG                                                                             <  SRR4302537.3328645/94‑1 (MQ=60)
                  TGACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGC                                                                            >  SRR4302537.4550433/1‑94 (MQ=60)
                    ACCATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGA                                                                          >  SRR4302537.3776508/1‑94 (MQ=60)
                      CATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAA                                                                        >  SRR4302537.2669495/1‑94 (MQ=60)
                       ATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAA                                                                       >  SRR4302537.300504/1‑94 (MQ=60)
                       ATTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAA                                                                       <  SRR4302537.5902501/94‑1 (MQ=60)
                        TTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAC                                                                      <  SRR4302537.129066/94‑1 (MQ=60)
                        TTTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAAC                                                                      >  SRR4302537.4487728/1‑94 (MQ=60)
                         TTTGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACG                                                                     <  SRR4302537.5696415/94‑1 (MQ=60)
                           TGTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGAC                                                                   >  SRR4302537.5914473/1‑94 (MQ=60)
                            GTCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACA                                                                  <  SRR4302537.5249255/94‑1 (MQ=60)
                             TCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAC                                                                 >  SRR4302537.3879784/1‑94 (MQ=60)
                             TCCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACAC                                                                 >  SRR4302537.5068449/1‑94 (MQ=60)
                              CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                                                                >  SRR4302537.4520853/1‑94 (MQ=60)
                              CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                                                                <  SRR4302537.1400700/94‑1 (MQ=60)
                              CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                                                                <  SRR4302537.1919530/94‑1 (MQ=60)
                              CCTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACC                                                                <  SRR4302537.1654042/94‑1 (MQ=60)
                               CTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCG                                                               >  SRR4302537.3231008/1‑94 (MQ=60)
                               CTGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCG                                                               >  SRR4302537.4632725/1‑94 (MQ=60)
                                TGTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGA                                                              >  SRR4302537.1234918/1‑94 (MQ=60)
                                 GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                                                             <  SRR4302537.1642762/94‑1 (MQ=60)
                                 GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                                                             <  SRR4302537.134008/94‑1 (MQ=60)
                                 GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                                                             <  SRR4302537.4562542/94‑1 (MQ=60)
                                 GTTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGAT                                                             >  SRR4302537.1312369/1‑94 (MQ=60)
                                  TTGCGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATT                                                            <  SRR4302537.1270328/94‑1 (MQ=60)
                                     CGCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAA                                                         >  SRR4302537.6237621/1‑94 (MQ=60)
                                      GCCTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAAC                                                        >  SRR4302537.4626692/1‑94 (MQ=60)
                                        CTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAG                                                      >  SRR4302537.2366828/1‑94 (MQ=60)
                                        CTTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAG                                                      <  SRR4302537.4142653/94‑1 (MQ=60)
                                         TTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGT                                                     <  SRR4302537.430796/94‑1 (MQ=60)
                                         TTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGT                                                     <  SRR4302537.681853/94‑1 (MQ=60)
                                         TTAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGT                                                     <  SRR4302537.1345377/94‑1 (MQ=60)
                                          TAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTC                                                    <  SRR4302537.5152117/94‑1 (MQ=60)
                                          TAATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTGAACAGTC                                                    >  SRR4302537.3760744/1‑94 (MQ=60)
                                            ATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGC                                                  <  SRR4302537.1362612/94‑1 (MQ=60)
                                            ATGTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGC                                                  >  SRR4302537.3633997/1‑94 (MQ=60)
                                              GTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAT                                                >  SRR4302537.2127662/1‑94 (MQ=60)
                                              GTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAT                                                <  SRR4302537.1849868/94‑1 (MQ=60)
                                              GTAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCAT                                                >  SRR4302537.5439783/1‑94 (MQ=60)
                                               TAAGTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATG                                               <  SRR4302537.1520838/94‑1 (MQ=60)
                                                  GTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACC                                            <  SRR4302537.124689/94‑1 (MQ=60)
                                                  GTGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACC                                            <  SRR4302537.4074724/94‑1 (MQ=60)
                                                   TGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCC                                           <  SRR4302537.4355939/94‑1 (MQ=60)
                                                   TGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCC                                           >  SRR4302537.796431/1‑94 (MQ=60)
                                                   TGCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCC                                           <  SRR4302537.5932676/94‑1 (MQ=60)
                                                    GCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCG                                          <  SRR4302537.5624170/94‑1 (MQ=60)
                                                    GCCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCG                                          >  SRR4302537.1581868/1‑94 (MQ=60)
                                                     CCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGT                                         <  SRR4302537.1181217/94‑1 (MQ=60)
                                                       GTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTAT                                       <  SRR4302537.3403125/94‑1 (MQ=60)
                                                        TCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATC                                      <  SRR4302537.3797367/94‑1 (MQ=60)
                                                        TCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATC                                      <  SRR4302537.5889487/94‑1 (MQ=60)
                                                        TCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATC                                      <  SRR4302537.2547680/94‑1 (MQ=60)
                                                        TCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATC                                      <  SRR4302537.1334615/94‑1 (MQ=60)
                                                         CCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCG                                     <  SRR4302537.1668451/94‑1 (MQ=60)
                                                          CACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGT                                    >  SRR4302537.625738/1‑94 (MQ=60)
                                                          CACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGT                                    >  SRR4302537.1316774/1‑94 (MQ=60)
                                                          CACAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGT                                    >  SRR4302537.4916729/1‑94 (MQ=60)
                                                            CAGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTAC                                  <  SRR4302537.2802164/94‑1 (MQ=60)
                                                             AGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACT                                 <  SRR4302537.3575426/94‑1 (MQ=60)
                                                             AGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACT                                 >  SRR4302537.4423448/1‑94 (MQ=60)
                                                             AGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACT                                 >  SRR4302537.4549846/1‑94 (MQ=60)
                                                             AGCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACT                                 <  SRR4302537.2822047/94‑1 (MQ=60)
                                                             AGCGTGGGACATACTTCAAGGAACCTTGTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACT                                 <  SRR4302537.6204430/94‑1 (MQ=60)
                                                              GCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTG                                <  SRR4302537.4167949/94‑1 (MQ=60)
                                                              GCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTG                                <  SRR4302537.3571702/94‑1 (MQ=60)
                                                              GCGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTG                                <  SRR4302537.4146140/94‑1 (MQ=60)
                                                               CGTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGC                               <  SRR4302537.65232/94‑1 (MQ=60)
                                                                GTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCT                              <  SRR4302537.746652/94‑1 (MQ=60)
                                                                GTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCT                              >  SRR4302537.5243528/1‑94 (MQ=60)
                                                                GTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCT                              >  SRR4302537.3543634/1‑94 (MQ=60)
                                                                GTGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCT                              >  SRR4302537.4552447/1‑94 (MQ=60)
                                                                 TGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTC                             <  SRR4302537.1845449/94‑1 (MQ=60)
                                                                 TGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTC                             >  SRR4302537.807766/1‑94 (MQ=60)
                                                                 TGGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTC                             <  SRR4302537.5647554/94‑1 (MQ=60)
                                                                  GGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCA                            <  SRR4302537.6265751/94‑1 (MQ=60)
                                                                  GGGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCA                            <  SRR4302537.2281184/94‑1 (MQ=60)
                                                                   GGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCAT                           <  SRR4302537.6190210/94‑1 (MQ=60)
                                                                   GGACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCAT                           >  SRR4302537.3664990/1‑94 (MQ=60)
                                                                    GACATACTTCAAGGAACCTTTTGTGGTTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATC                          <  SRR4302537.3019889/94‑1 (MQ=60)
                                                                     GCATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCA                         <  SRR4302537.413223/94‑1 (MQ=60)
                                                                     ACATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCA                         >  SRR4302537.2923975/1‑94 (MQ=60)
                                                                      CATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAG                        >  SRR4302537.1815438/1‑94 (MQ=60)
                                                                      CATACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAG                        >  SRR4302537.2510591/1‑94 (MQ=60)
                                                                        TACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCT                      <  SRR4302537.951610/94‑1 (MQ=60)
                                                                        TACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCT                      <  SRR4302537.631927/94‑1 (MQ=60)
                                                                         ACTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTT                     >  SRR4302537.576293/1‑94 (MQ=60)
                                                                          CTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTT                    <  SRR4302537.5727106/94‑1 (MQ=60)
                                                                          CTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTT                    >  SRR4302537.4146345/1‑94 (MQ=60)
                                                                          CTTCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTT                    <  SRR4302537.351178/94‑1 (MQ=60)
                                                                            TCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAT                  <  SRR4302537.4994099/94‑1 (MQ=60)
                                                                            TCAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTAT                  <  SRR4302537.3574356/94‑1 (MQ=60)
                                                                             CAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATC                 >  SRR4302537.5408468/1‑94 (MQ=60)
                                                                             CAAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATC                 <  SRR4302537.1259395/94‑1 (MQ=60)
                                                                              AAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCT                <  SRR4302537.1529028/94‑1 (MQ=60)
                                                                              AAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCT                <  SRR4302537.636773/94‑1 (MQ=60)
                                                                              AAGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCT                <  SRR4302537.4228001/94‑1 (MQ=60)
                                                                               AGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTT               <  SRR4302537.2834962/94‑1 (MQ=60)
                                                                               AGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTT               <  SRR4302537.121671/94‑1 (MQ=60)
                                                                               AGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTT               <  SRR4302537.5514698/94‑1 (MQ=60)
                                                                               AGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTT               <  SRR4302537.4118223/94‑1 (MQ=60)
                                                                               AGGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTT               >  SRR4302537.5039872/1‑94 (MQ=60)
                                                                                GGAACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTC              >  SRR4302537.1408789/1‑94 (MQ=60)
                                                                                  ATCCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            <  SRR4302537.6011183/94‑1 (MQ=60)
                                                                                  AACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            <  SRR4302537.2240149/94‑1 (MQ=60)
                                                                                  AACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            <  SRR4302537.1306830/94‑1 (MQ=60)
                                                                                  AACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            <  SRR4302537.2018953/94‑1 (MQ=60)
                                                                                  AACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            >  SRR4302537.2630976/1‑94 (MQ=60)
                                                                                  AACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            <  SRR4302537.6127351/94‑1 (MQ=60)
                                                                                  AACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTT            >  SRR4302537.835879/1‑94 (MQ=60)
                                                                                   ACCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTC           <  SRR4302537.815542/94‑1 (MQ=60)
                                                                                    CCTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGCCCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCT          <  SRR4302537.2236658/94‑1 (MQ=60)
                                                                                     CTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTT         >  SRR4302537.5268992/1‑94 (MQ=60)
                                                                                     CTTTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTT         <  SRR4302537.4758527/94‑1 (MQ=60)
                                                                                       TTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTG       >  SRR4302537.110131/1‑94 (MQ=60)
                                                                                       TTTGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTG       >  SRR4302537.5851928/1‑94 (MQ=60)
                                                                                         TGTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGC     <  SRR4302537.1091508/94‑1 (MQ=60)
                                                                                          GTGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCC    <  SRR4302537.2185044/94‑1 (MQ=60)
                                                                                           TGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCG   >  SRR4302537.2094326/1‑94 (MQ=60)
                                                                                           TGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCG   <  SRR4302537.2435638/94‑1 (MQ=60)
                                                                                           TGGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCG   <  SRR4302537.2583325/94‑1 (MQ=60)
                                                                                            GGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCGT  <  SRR4302537.5887903/94‑1 (MQ=60)
                                                                                            GGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCGT  <  SRR4302537.4008115/94‑1 (MQ=60)
                                                                                            GGGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCGT  <  SRR4302537.6109649/94‑1 (MQ=60)
                                                                                             |                                                                                            
TTTTACATAACGAAGAATTGACCATTTTGTCCTGTTGTGCCTTAATGTAAGTACCGTCCACAGCGTGGGACATACTTCAAGGAACCTTTTGTGAGTCAGGCAACCAGTATGCGAAAACGACACCGATTTAACAGTCGCATGACCCGTATCGTACTGCTCATCAGCTTTATCTTCTTCTTTGGCCGT  >  NC_000913/2627220‑2627405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑