Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,640,478	A→G	G129G (GGT→GGC)	yfgA ←	putative membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,640,478	0	A	G	100.0%	676.0 / NA	200	G129G (GGT→GGC)	yfgA	putative membrane protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (129/71); total (129/71)

Only 100 of 215 total aligned reads displayed.

CTCGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCACCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAA  >  NC_000913/2640388‑2640567

  cGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGcgccgc                                                                                       <  1:2776624/93‑1 (MQ=255)

  cGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGcgccgc                                                                                       <  2:1774558/93‑1 (MQ=255)

    cTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTc                                                                                     >  1:3551623/1‑93 (MQ=255)

    cTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTc                                                                                     <  2:4298145/93‑1 (MQ=255)

    cTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTc                                                                                     <  1:2342597/93‑1 (MQ=255)

     tATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCa                                                                                    <  2:5859218/93‑1 (MQ=255)

     tATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCa                                                                                    >  2:6433204/1‑93 (MQ=255)

      aTTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAg                                                                                   <  1:1775685/93‑1 (MQ=255)

      aTTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAg                                                                                   >  1:2106712/1‑93 (MQ=255)

      aTTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAg                                                                                   >  1:229257/1‑93 (MQ=255)

       ttACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAgg                                                                                  >  2:2639418/1‑93 (MQ=255)

       ttACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAgg                                                                                  >  1:36997/1‑93 (MQ=255)

        tACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGc                                                                                 >  2:898684/1‑93 (MQ=255)

          cTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCg                                                                               >  2:3439608/1‑93 (MQ=255)

           tGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGa                                                                              >  1:4798442/1‑93 (MQ=255)

           tGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGa                                                                              <  1:4282517/93‑1 (MQ=255)

             cTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATa                                                                            >  1:2662258/1‑93 (MQ=255)

               cAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAAc                                                                          >  2:5385759/1‑93 (MQ=255)

                 gTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACca                                                                        <  1:5150317/93‑1 (MQ=255)

                 gTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACca                                                                        >  2:1080774/1‑93 (MQ=255)

                   tCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACcaca                                                                      <  2:240100/93‑1 (MQ=255)

                     cgccgAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCacaaa                                                                    >  1:3241222/1‑93 (MQ=255)

                      gccgAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCacaaac                                                                   >  2:4646850/1‑93 (MQ=255)

                      gccgAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCacaaac                                                                   <  1:527832/93‑1 (MQ=255)

                       ccgAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCacaaaca                                                                  >  2:4951103/1‑93 (MQ=255)

                        cgAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCacaaacac                                                                 >  2:6365030/1‑92 (MQ=255)

                        cgAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCacaaacaa                                                                 <  2:2037091/93‑1 (MQ=255)

                         gAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAaacaac                                                                <  2:5196635/93‑1 (MQ=255)

                         gAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAaacaac                                                                >  2:4699829/1‑93 (MQ=255)

                          aaGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAacaaca                                                               <  2:4533606/93‑1 (MQ=255)

                          aaGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAacaaca                                                               <  2:1305603/93‑1 (MQ=255)

                           aGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAacac                                                              >  1:5174994/1‑93 (MQ=255)

                            gATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACAcc                                                             >  1:1417895/1‑93 (MQ=255)

                             aTTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCa                                                            >  1:6070997/1‑93 (MQ=255)

                             aTTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCa                                                            >  1:339224/1‑93 (MQ=255)

                             aTTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCa                                                            >  2:3219778/1‑93 (MQ=255)

                             aTTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCACGCCGATAACCACAAACAACACCa                                                            >  1:2019587/1‑93 (MQ=255)

                              ttGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCTCCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAg                                                           <  1:4550731/93‑1 (MQ=255)

                              ttGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAg                                                           >  2:1386747/1‑93 (MQ=255)

                              ttGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAg                                                           >  1:5227094/1‑93 (MQ=255)

                                  tCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCaa                                                       >  1:2978847/1‑93 (MQ=255)

                                  tCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCaa                                                       <  2:4174864/93‑1 (MQ=255)

                                    ggCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCAGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGt                                                     >  1:733191/1‑93 (MQ=255)

                                     gCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTg                                                    >  2:1533977/1‑93 (MQ=255)

                                      ccATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGa                                                   >  1:2893285/1‑93 (MQ=255)

                                      ccATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGa                                                   >  2:1987113/1‑93 (MQ=255)

                                       cATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGaa                                                  <  1:4164093/93‑1 (MQ=255)

                                       cATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCACAAACAACACCAGCCAAGTGaa                                                  >  1:307156/1‑93 (MQ=255)

                                         tAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAgg                                                >  1:100840/1‑93 (MQ=255)

                                         tAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAgg                                                >  1:2407800/1‑93 (MQ=255)

                                          aGTGTTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCGCCACCAGGCGCCGCTCAGACCGATAACCACAAACAACACCAGCCAAGTGAAGGt                                               <  1:2530856/93‑1 (MQ=255)

                                           gtggtgATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGtc                                              <  2:4007840/93‑1 (MQ=255)

                                           gtggtgATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGtc                                              >  2:2855640/1‑93 (MQ=255)

                                               tgATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGtcatca                                          <  2:410564/93‑1 (MQ=255)

                                               tgATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGtcatca                                          >  2:3518096/1‑93 (MQ=255)

                                                gATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcag                                         <  2:5352520/93‑1 (MQ=255)

                                                gATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcag                                         >  1:5326203/1‑93 (MQ=255)

                                                 aTCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcagc                                        >  2:1475810/1‑93 (MQ=255)

                                                  tctcTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcagcc                                       >  1:3183023/1‑93 (MQ=255)

                                                   ctctTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcagcca                                      <  1:1093226/93‑1 (MQ=255)

                                                    tctTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcagccag                                     >  1:1349736/1‑93 (MQ=255)

                                                    tctTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATcagccag                                     >  2:3041637/1‑93 (MQ=255)

                                                      ttCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCagccagcc                                   <  2:6113799/93‑1 (MQ=255)

                                                      ttCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCagccagcc                                   <  2:1087710/93‑1 (MQ=255)

                                                       tCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCg                                  >  1:3344770/1‑93 (MQ=255)

                                                        cctcctGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGt                                 <  1:1185419/93‑1 (MQ=255)

                                                        ccTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGt                                 >  2:5024799/1‑93 (MQ=255)

                                                         ctgctgAGTTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTc                                <  1:2456111/93‑1 (MQ=255)

                                                          tgctgAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTcg                               >  2:2232794/1‑93 (MQ=255)

                                                           gctgAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTcgc                              >  1:5020542/1‑93 (MQ=255)

                                                             tgAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGt                            <  2:799823/93‑1 (MQ=255)

                                                             tgAGCTTTGCGGGCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGt                            >  2:3560286/1‑93 (MQ=255)

                                                              gAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGtt                           >  2:3910546/1‑93 (MQ=255)

                                                                   ttGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTg                      >  1:5971981/1‑93 (MQ=255)

                                                                     gCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTgcg                    >  1:1038852/1‑93 (MQ=255)

                                                                      cGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTgcgg                   >  2:84964/1‑93 (MQ=255)

                                                                      cGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTgcgg                   >  2:1511542/1‑93 (MQ=255)

                                                                      cGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTgcgg                   >  1:5476686/1‑93 (MQ=255)

                                                                        gTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTgcggcg                 >  2:590200/1‑93 (MQ=255)

                                                                         tCTTGCCCCCACCAGGCGCCGCTCAGACCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGt                <  2:125177/93‑1 (MQ=255)

                                                                         tCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGt                <  1:5945450/93‑1 (MQ=255)

                                                                          cTTCCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGtt               <  2:5791176/93‑1 (MQ=255)

                                                                           ttGCCACCCCCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGttt              <  1:5068906/93‑1 (MQ=255)

                                                                           ttGCCACCACCCGGCGCCGCTCAGGCTGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGctt              >  2:5064001/1‑93 (MQ=255)

                                                                           ttGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGttt              >  1:802712/1‑93 (MQ=255)

                                                                            tGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTa             >  2:2878726/1‑93 (MQ=255)

                                                                              ccaccaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTAcc           >  1:4333077/1‑93 (MQ=255)

                                                                               caccaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCCGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCg          >  2:2445993/1‑93 (MQ=255)

                                                                               caccaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCg          >  1:130192/1‑93 (MQ=255)

                                                                               caccaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCg          >  2:4800788/1‑93 (MQ=255)

                                                                               caccaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCg          >  2:2138160/1‑93 (MQ=255)

                                                                                accaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGa         <  1:4113540/93‑1 (MQ=255)

                                                                                accaccaGCCGCCGCTCAGGCCGATACCCACAAACAACACCAGCCACGCGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGa         >  1:992131/1‑93 (MQ=255)

                                                                                 ccaccaGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAg        <  1:6337839/93‑1 (MQ=255)

                                                                                    ccgggCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGa     <  2:15449/90‑1 (MQ=255)

                                                                                     caGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGaa    >  1:574655/1‑93 (MQ=255)

                                                                                     caGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGaa    >  2:5526138/1‑93 (MQ=255)

                                                                                     caGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGaa    <  1:4467329/93‑1 (MQ=255)

                                                                                     caGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGGTTTTTGTGGGGTTTACCGAgggga    >  1:1485461/1‑91 (MQ=255)

                                                                                       ggCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGaaaa  <  1:4371672/93‑1 (MQ=255)

CTCGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCACCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAA  >  NC_000913/2640388‑2640567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTGCTCGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCACCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAAAC  >  NC_000913/2640385‑2640569

CTGCTCGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCG                                                                                             <  SRR4302537.6210462/94‑1 (MQ=60)

 TGCTCGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGC                                                                                            >  SRR4302537.5256473/1‑94 (MQ=60)

     CGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCT                                                                                        <  SRR4302537.5994379/94‑1 (MQ=60)

     CGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCT                                                                                        <  SRR4302537.2796036/94‑1 (MQ=60)

      GCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTC                                                                                       >  SRR4302537.3576703/1‑94 (MQ=60)

      GCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTC                                                                                       >  SRR4302537.4797016/1‑94 (MQ=60)

       CTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCA                                                                                      <  SRR4302537.2359103/94‑1 (MQ=60)

        TATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAG                                                                                     >  SRR4302537.230879/1‑94 (MQ=60)

        TATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAG                                                                                     >  SRR4302537.2121562/1‑94 (MQ=60)

         ATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGG                                                                                    >  SRR4302537.37279/1‑94 (MQ=60)

         ATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGG                                                                                    <  SRR4302537.1788048/94‑1 (MQ=60)

             CTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGA                                                                                >  SRR4302537.5252824/1‑94 (MQ=60)

             CTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGA                                                                                >  SRR4302537.3015351/1‑94 (MQ=60)

             CTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGA                                                                                >  SRR4302537.4831550/1‑94 (MQ=60)

              TGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGAT                                                                               <  SRR4302537.2509212/94‑1 (MQ=60)

              TGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGAT                                                                               <  SRR4302537.4312287/94‑1 (MQ=60)

              TGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGAT                                                                               <  SRR4302537.6168487/94‑1 (MQ=60)

               GCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATA                                                                              >  SRR4302537.2680857/1‑94 (MQ=60)

                CTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAA                                                                             >  SRR4302537.1490428/1‑94 (MQ=60)

                 TCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAAC                                                                            >  SRR4302537.23001/1‑94 (MQ=60)

                 TCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAAC                                                                            <  SRR4302537.2406396/94‑1 (MQ=60)

                  CAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACC                                                                           <  SRR4302537.4173999/94‑1 (MQ=60)

                  CAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACC                                                                           <  SRR4302537.2461801/94‑1 (MQ=60)

                   AGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCA                                                                          <  SRR4302537.4291/94‑1 (MQ=60)

                    GTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCAC                                                                         <  SRR4302537.5185808/94‑1 (MQ=60)

                       CCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCACAAA                                                                      >  SRR4302537.3264066/1‑94 (MQ=60)

                         GCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACA                                                                    <  SRR4302537.531455/94‑1 (MQ=60)

                         GCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGATGAGCTTTGCGCTCTTGCCACCGCCAGGCGCCGCTAAGGCCGATAACCACAAACA                                                                    <  SRR4302537.2218761/94‑1 (MQ=60)

                           CGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAAC                                                                  >  SRR4302537.413805/1‑94 (MQ=60)

                           CGAAGATTGATCGGCCATAGGGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGGGCCGCTCAGGCCGATAAGCACAAACAAC                                                                  >  SRR4302537.1915899/1‑94 (MQ=60)

                            GAGGATTTATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACA                                                                 <  SRR4302537.2334847/94‑1 (MQ=60)

                            GAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACA                                                                 <  SRR4302537.6239961/94‑1 (MQ=60)

                            GAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACA                                                                 <  SRR4302537.5112929/94‑1 (MQ=60)

                             AAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACAC                                                                >  SRR4302537.5210613/1‑94 (MQ=60)

                              AGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACC                                                               >  SRR4302537.1427764/1‑94 (MQ=60)

                               GATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCA                                                              >  SRR4302537.341577/1‑94 (MQ=60)

                               GATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCA                                                              <  SRR4302537.94899/94‑1 (MQ=60)

                               GATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCA                                                              >  SRR4302537.6112711/1‑94 (MQ=60)

                               GATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCACGCCGATAACCACAAACAACACCA                                                              >  SRR4302537.2033672/1‑94 (MQ=60)

                               AATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCA                                                              <  SRR4302537.556561/94‑1 (MQ=60)

                                ATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAG                                                             >  SRR4302537.5263044/1‑94 (MQ=60)

                                ATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAG                                                             >  SRR4302537.5076113/1‑94 (MQ=60)

                                 TTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCTCCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGC                                                            <  SRR4302537.4582223/94‑1 (MQ=60)

                                  TGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCC                                                           >  SRR4302537.5285021/1‑94 (MQ=60)

                                    ATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAA                                                         >  SRR4302537.2999687/1‑94 (MQ=60)

                                      CGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGT                                                       <  SRR4302537.6420323/94‑1 (MQ=60)

                                      CGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCAGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGT                                                       >  SRR4302537.738195/1‑94 (MQ=60)

                                       GGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTG                                                      >  SRR4302537.5268397/1‑94 (MQ=60)

                                        GCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGA                                                     >  SRR4302537.2913596/1‑94 (MQ=60)

                                         CCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCACAAACAACACCAGCCAAGTGAA                                                    >  SRR4302537.309286/1‑94 (MQ=60)

                                          CATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAG                                                   <  SRR4302537.4193177/94‑1 (MQ=60)

                                          CATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAG                                                   >  SRR4302537.4322262/1‑94 (MQ=60)

                                           ATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGG                                                  >  SRR4302537.101565/1‑94 (MQ=60)

                                           ATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGG                                                  >  SRR4302537.2424748/1‑94 (MQ=60)

                                            TAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGT                                                 >  SRR4302537.4866406/1‑94 (MQ=60)

                                             AGTGTTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCGCCACCAGGCGCCGCTCAGACCGATAACCACAAACAACACCAGCCAAGTGAAGGTC                                                <  SRR4302537.2548615/94‑1 (MQ=60)

                                             AGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTC                                                <  SRR4302537.1319994/94‑1 (MQ=60)

                                              GTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCTAAGTGAAGGTCA                                               <  SRR4302537.2452929/94‑1 (MQ=60)

                                                  TGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAG                                           >  SRR4302537.5362748/1‑94 (MQ=60)

                                                   GATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGC                                          <  SRR4302537.2931402/94‑1 (MQ=60)

                                                    ATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCC                                         >  SRR4302537.3428144/1‑94 (MQ=60)

                                                    ATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCC                                         >  SRR4302537.3205396/1‑94 (MQ=60)

                                                    ATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCC                                         <  SRR4302537.2743806/94‑1 (MQ=60)

                                                    ATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCC                                         >  SRR4302537.4396675/1‑94 (MQ=60)

                                                     TCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCA                                        >  SRR4302537.5191409/1‑94 (MQ=60)

                                                     TCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCA                                        >  SRR4302537.290645/1‑94 (MQ=60)

                                                      CTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAG                                       >  SRR4302537.5506336/1‑94 (MQ=60)

                                                      CTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAG                                       <  SRR4302537.1100774/94‑1 (MQ=60)

                                                      CTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAG                                       >  SRR4302537.1359142/1‑94 (MQ=60)

                                                      CTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAG                                       <  SRR4302537.4729129/94‑1 (MQ=60)

                                                       TCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGC                                      >  SRR4302537.6088485/1‑94 (MQ=60)

                                                       TCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGC                                      >  SRR4302537.3366636/1‑94 (MQ=60)

                                                        CTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCC                                     <  SRR4302537.4407452/94‑1 (MQ=60)

                                                         TTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGACGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCG                                    >  SRR4302537.3368450/1‑94 (MQ=60)

                                                           CCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTC                                  >  SRR4302537.2036700/1‑94 (MQ=60)

                                                           CCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTC                                  >  SRR4302537.3045854/1‑94 (MQ=60)

                                                           CCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTC                                  >  SRR4302537.3147438/1‑94 (MQ=60)

                                                           CCTCCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTC                                  <  SRR4302537.1193657/94‑1 (MQ=60)

                                                            CTGCTGAGTTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCG                                 <  SRR4302537.2473386/94‑1 (MQ=60)

                                                            CTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCG                                 >  SRR4302537.3258807/1‑94 (MQ=60)

                                                             TGCTGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGC                                >  SRR4302537.5055120/1‑94 (MQ=60)

                                                                TGAGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTT                             <  SRR4302537.3808043/94‑1 (MQ=60)

                                                                  AGCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGGTAACCACAAAGAACACCAGCCAAGTGAAGGGCATCAGCCGGCCGTCGCGTTGT                           >  SRR4302537.2671627/1‑94 (MQ=60)

                                                                   GCTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTT                          <  SRR4302537.752910/94‑1 (MQ=60)

                                                                    CTTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTT                         >  SRR4302537.1457884/1‑94 (MQ=60)

                                                                     TTTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTG                        >  SRR4302537.6012970/1‑94 (MQ=60)

                                                                      TTGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGC                       <  SRR4302537.1024006/94‑1 (MQ=60)

                                                                       TGCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCG                      >  SRR4302537.1046002/1‑94 (MQ=60)

                                                                        GCGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGG                     >  SRR4302537.5514070/1‑94 (MQ=60)

                                                                         CGGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGC                    <  SRR4302537.5339542/94‑1 (MQ=60)

                                                                          GGTCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCG                   >  SRR4302537.3604871/1‑94 (MQ=60)

                                                                            TCTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTT                 <  SRR4302537.5986258/94‑1 (MQ=60)

                                                                             CTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTT                <  SRR4302537.4549001/94‑1 (MQ=60)

                                                                             CTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTT                >  SRR4302537.808222/1‑94 (MQ=60)

                                                                             CTTGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTT                <  SRR4302537.1052937/94‑1 (MQ=60)

                                                                              TTGCCACCCCCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTA               <  SRR4302537.5103800/94‑1 (MQ=60)

                                                                               TGCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTAC              >  SRR4302537.340035/1‑94 (MQ=60)

                                                                                GCCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACC             >  SRR4302537.4363175/1‑94 (MQ=60)

                                                                                 CCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTTCGGCGTTTACCG            >  SRR4302537.1162330/1‑94 (MQ=60)

                                                                                 CCACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCG            >  SRR4302537.131114/1‑94 (MQ=60)

                                                                                  CACCACCAGCCGCCGCTCAGGCCGATACCCACAAACAACACCAGCCACGCGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGA           >  SRR4302537.998985/1‑94 (MQ=60)

                                                                                   ACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAG          <  SRR4302537.5953348/94‑1 (MQ=60)

                                                                                   ACCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAG          <  SRR4302537.4142279/94‑1 (MQ=60)

                                                                                    CCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGG         <  SRR4302537.2565851/94‑1 (MQ=60)

                                                                                    CCACCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGG         <  SRR4302537.6381155/94‑1 (MQ=60)

                                                                                       CCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAA      >  SRR4302537.1404565/1‑94 (MQ=60)

                                                                                       CCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAA      >  SRR4302537.578598/1‑94 (MQ=60)

                                                                                       CCAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGGTTTTTGTGGGGTTTACCGAGGGGA      >  SRR4302537.1495797/1‑94 (MQ=60)

                                                                                        CAGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAA     <  SRR4302537.4498224/94‑1 (MQ=60)

                                                                                         AGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAA    >  SRR4302537.1778218/1‑94 (MQ=60)

                                                                                         AGGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAA    >  SRR4302537.1231653/1‑94 (MQ=60)

                                                                                          GGCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAAA   <  SRR4302537.4401877/94‑1 (MQ=60)

                                                                                           GCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAAAC  <  SRR4302537.1747827/94‑1 (MQ=60)

                                                                                           GCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAAAC  <  SRR4302537.1506181/94‑1 (MQ=60)

                                                                                           GCGCCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAAAC  <  SRR4302537.3301379/94‑1 (MQ=60)

CTGCTCGCTATTACTGCTCAGTTCCGCCGAAGATTGATCGGCCATAGTGGTGATCTCTTCCTGCTGAGCTTTGCGGTCTTGCCACCACCAGGCACCGCTCAGGCCGATAACCACAAACAACACCAGCCAAGTGAAGGTCATCAGCCAGCCGTCGCGTTTTTTGCGGCGTTTACCGAGGGAAAAAC  >  NC_000913/2640385‑2640569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`