Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,754,173 A→G intergenic (+774/‑7) smpB → / → intA small protein B/prophage CP4‑57 integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,754,1730AG100.0% 923.2 / NA 278intergenic (+774/‑7)smpB/intAsmall protein B/prophage CP4‑57 integrase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (159/119);  total (159/119)

Only 100 of 301 total aligned reads displayed.

GAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGG  >  NC_000913/2754083‑2754262
                                                                                          |                                                                                         
gAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCt                                                                                         >  2:2975699/1‑93 (MQ=255)
 aaGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTc                                                                                        >  1:2260414/1‑93 (MQ=255)
  agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTcc                                                                                       <  1:785770/93‑1 (MQ=255)
   gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTccc                                                                                      >  1:1366124/1‑93 (MQ=255)
   gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTccc                                                                                      <  1:5371189/93‑1 (MQ=255)
     gaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCa                                                                                    <  1:5337882/93‑1 (MQ=255)
      aaCTAATTAAATCCGAACCTTTTTGGCCCATTGATAGGCCCAACGAGAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAt                                                                                   >  2:5199219/1‑93 (MQ=255)
      aaCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAt                                                                                   >  1:6054599/1‑93 (MQ=255)
       aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATg                                                                                  <  2:3064522/93‑1 (MQ=255)
       aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATg                                                                                  >  1:2579284/1‑93 (MQ=255)
        cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATgg                                                                                 <  2:3434296/93‑1 (MQ=255)
           aTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCaa                                                                              >  1:238043/1‑93 (MQ=255)
           aTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCaa                                                                              <  2:4226384/93‑1 (MQ=255)
           aTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCaa                                                                              >  1:2738167/1‑93 (MQ=255)
            ttAAATCCGAACCTTTTAGGCCCATTGATAGGCGCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGTTCCCCATGGCCAg                                                                             >  1:3978364/1‑93 (MQ=255)
                aTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGcaaa                                                                         >  2:3323592/1‑93 (MQ=255)
                 tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGaaaaa                                                                        <  1:4948225/93‑1 (MQ=255)
                  ccGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAAc                                                                       >  1:4836332/1‑93 (MQ=255)
                     aaCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCaa                                                                    >  1:4177394/1‑93 (MQ=255)
                     aaCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCaa                                                                    >  2:6148203/1‑93 (MQ=255)
                      aCCTTTTAGGCCCATTGATAGGCCCAATGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAg                                                                   >  2:843506/1‑93 (MQ=255)
                      aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAg                                                                   >  1:5649357/1‑93 (MQ=255)
                      aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAg                                                                   >  2:455092/1‑93 (MQ=255)
                      aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAg                                                                   >  2:4630437/1‑93 (MQ=255)
                      aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAg                                                                   <  2:543465/93‑1 (MQ=255)
                      aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAg                                                                   >  1:2139456/1‑93 (MQ=255)
                       ccTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGc                                                                  <  2:1136542/93‑1 (MQ=255)
                       ccTTTTACGCACATTGATAGGCCCAACGAAAAGCTCTATTGTTTGCGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGc                                                                  <  1:6178021/93‑1 (MQ=255)
                        cTTTTAGGCCCATTGATAGGCCCAACGAAATGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGcc                                                                 <  2:5692026/93‑1 (MQ=255)
                         ttttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCg                                                                >  2:2337991/1‑93 (MQ=255)
                           ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGtt                                                              >  1:4486398/1‑93 (MQ=255)
                            tAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTa                                                             <  2:4988792/93‑1 (MQ=255)
                             aGGCCCATTGATGGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCTTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTaa                                                            <  2:2759797/93‑1 (MQ=255)
                             aGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTaa                                                            >  1:140463/1‑93 (MQ=255)
                              ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAAc                                                           <  1:2629455/93‑1 (MQ=255)
                              ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAAc                                                           >  2:1464669/1‑93 (MQ=255)
                              ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAAc                                                           >  1:3707232/1‑93 (MQ=255)
                              ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCCCCCCCTGGCAAGAAAAACCAAGCCGTTAAc                                                           >  1:4779537/1‑93 (MQ=255)
                               gCCCATTAATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACt                                                          <  2:442344/93‑1 (MQ=255)
                                cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTg                                                         >  2:117786/1‑93 (MQ=255)
                                  cATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGAt                                                       >  2:3548904/1‑93 (MQ=255)
                                   aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATa                                                      >  2:2395342/1‑93 (MQ=255)
                                   aTTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATa                                                      >  1:3005571/1‑93 (MQ=255)
                                    ttGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATAc                                                     >  2:5584396/1‑93 (MQ=255)
                                     tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACg                                                    <  1:5254054/93‑1 (MQ=255)
                                      gATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACgg                                                   >  2:4239586/1‑93 (MQ=255)
                                       aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGa                                                  <  1:5154999/93‑1 (MQ=255)
                                        tAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGaa                                                 >  1:550176/1‑93 (MQ=255)
                                         aGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGaaa                                                <  2:1370860/93‑1 (MQ=255)
                                         aGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGaaa                                                <  1:4676902/93‑1 (MQ=255)
                                           gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATc                                              <  1:4052758/93‑1 (MQ=255)
                                            cccAACGAAAAGCTCTATTGTTTCCGTTGGGCCTAACCGCAGGGAGCCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCa                                             <  2:5822224/93‑1 (MQ=255)
                                             ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTGAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCaa                                            >  1:6307477/1‑93 (MQ=255)
                                             ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCaa                                            >  1:1656628/1‑93 (MQ=255)
                                              cAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCaaa                                           <  1:6441715/93‑1 (MQ=255)
                                               aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAg                                          >  2:792810/1‑93 (MQ=255)
                                               aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAg                                          >  2:6372621/1‑93 (MQ=255)
                                               aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAg                                          <  2:2108378/93‑1 (MQ=255)
                                               aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAg                                          <  1:5946501/93‑1 (MQ=255)
                                               aaCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAg                                          >  2:4833603/1‑93 (MQ=255)
                                                aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAgc                                         <  2:3720855/93‑1 (MQ=255)
                                                   aaaaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAgccgc                                      >  1:2687330/1‑93 (MQ=255)
                                                   aaaaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAgccgc                                      >  1:5705594/1‑93 (MQ=255)
                                                     aaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCa                                    >  1:4256249/1‑93 (MQ=255)
                                                      aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCaa                                   >  1:2832382/1‑93 (MQ=255)
                                                      aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCaa                                   >  2:6031850/1‑93 (MQ=255)
                                                      aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCaa                                   >  2:5255778/1‑93 (MQ=255)
                                                       gCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCCAAGCCGCCaaa                                  >  2:5916128/1‑93 (MQ=255)
                                                         tctATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAAcc                                >  1:3628486/1‑93 (MQ=255)
                                                         tctATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAAcc                                <  1:1294844/93‑1 (MQ=255)
                                                          ctATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCt                               >  1:3487856/1‑93 (MQ=255)
                                                           tATTGTTTCCGTTGGGCCTAACCGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTa                              <  2:1932699/93‑1 (MQ=255)
                                                           tATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTa                              >  1:1482810/1‑93 (MQ=255)
                                                            aTTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTaa                             <  1:5837591/93‑1 (MQ=255)
                                                             ttGTTTACGTGGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTaaa                            <  2:3885597/93‑1 (MQ=255)
                                                              tGTTTAGGTTGGCCCTAACCGCAGGGAGGCTCCCCATGCAAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAg                           <  1:204966/93‑1 (MQ=255)
                                                                tttACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGAt                         >  2:2462622/1‑93 (MQ=255)
                                                                 ttACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATg                        >  2:3987686/1‑93 (MQ=255)
                                                                  tACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGc                       <  2:323822/93‑1 (MQ=255)
                                                                   aCGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGcc                      <  2:4363465/93‑1 (MQ=255)
                                                                   aCGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGcc                      <  2:1830059/93‑1 (MQ=255)
                                                                     gTTGGACTTAAACGCAGGGAGGCACCCCATGGCAAGAAAACCCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGa                    <  2:1295477/93‑1 (MQ=255)
                                                                      ttGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGAt                   <  2:2623387/93‑1 (MQ=255)
                                                                        gggCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTa                 >  2:4907559/1‑93 (MQ=255)
                                                                         ggCTTAACCGCAGGGAGGCGCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTAc                <  2:2727974/93‑1 (MQ=255)
                                                                           ccTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCa              >  2:2049564/1‑93 (MQ=255)
                                                                           ccTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCa              <  2:2227814/93‑1 (MQ=255)
                                                                            cTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAg             >  1:1804775/1‑93 (MQ=255)
                                                                             tAAACGCAGGGAGGCTCCCCATGGCAAGAAAACCCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGc            <  1:3069194/93‑1 (MQ=255)
                                                                              aaaCGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCt           >  2:5014935/1‑93 (MQ=255)
                                                                               acggCAGGGAGGCTCCCCATGCCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCtt          <  2:5214259/90‑1 (MQ=255)
                                                                               accGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCtt          <  1:5821879/91‑1 (MQ=255)
                                                                                aCGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCttt         <  1:4373553/93‑1 (MQ=255)
                                                                                    aGGGAGCCTCCCCATGCAAAAAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtga     <  1:3308321/93‑1 (MQ=255)
                                                                                     gggAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgac    >  2:3620387/1‑93 (MQ=255)
                                                                                     gggAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgac    >  2:3926771/1‑93 (MQ=255)
                                                                                     gggAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgac    >  1:1060129/1‑93 (MQ=255)
                                                                                     gggAGGCTCCCCAGGGCAAGAAAACCCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgac    <  2:3360296/93‑1 (MQ=255)
                                                                                       gaggCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacgg  >  2:4029993/1‑93 (MQ=255)
                                                                                       gaggCTCCCAATGGCAAGAAAACCCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTAtgacgg  <  2:4125897/93‑1 (MQ=255)
                                                                                          |                                                                                         
GAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGG  >  NC_000913/2754083‑2754262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGAC  >  NC_000913/2754081‑2754266
                                                                                            |                                                                                             
CCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGC                                                                                              >  SRR4302537.1255347/1‑94 (MQ=60)
CCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGC                                                                                              >  SRR4302537.1850357/1‑94 (MQ=60)
CCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGC                                                                                              >  SRR4302537.1750940/1‑94 (MQ=60)
CCGAAGAGAACTAATTAAAGCCGAAGCGTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGC                                                                                              <  SRR4302537.1079520/94‑1 (MQ=60)
 CGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCT                                                                                             >  SRR4302537.3619435/1‑94 (MQ=60)
 CGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCT                                                                                             <  SRR4302537.1439089/94‑1 (MQ=60)
  GAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTC                                                                                            >  SRR4302537.2276364/1‑94 (MQ=60)
    AGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCC                                                                                          <  SRR4302537.791165/94‑1 (MQ=60)
    AGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCC                                                                                          >  SRR4302537.5728856/1‑94 (MQ=60)
    AGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCC                                                                                          >  SRR4302537.1375643/1‑94 (MQ=60)
     GAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCC                                                                                         <  SRR4302537.5407932/94‑1 (MQ=60)
     GAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCC                                                                                         >  SRR4302537.4281307/1‑94 (MQ=60)
      AGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCA                                                                                        >  SRR4302537.5738971/1‑94 (MQ=60)
      AGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCA                                                                                        >  SRR4302537.2491321/1‑94 (MQ=60)
       GAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAT                                                                                       <  SRR4302537.5374477/94‑1 (MQ=60)
       GAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAT                                                                                       <  SRR4302537.4808778/94‑1 (MQ=60)
       GAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAT                                                                                       >  SRR4302537.3028618/1‑94 (MQ=60)
       GAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAT                                                                                       >  SRR4302537.6096188/1‑94 (MQ=60)
       GAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAT                                                                                       <  SRR4302537.634039/94‑1 (MQ=60)
       GAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAT                                                                                       <  SRR4302537.3452902/94‑1 (MQ=60)
        AACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATG                                                                                      >  SRR4302537.2597340/1‑94 (MQ=60)
         ACTAATTAAATCCGAACCTTTTAGGCCGATTGATAGGCCCAACGAAAAGCTCTAGTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGG                                                                                     <  SRR4302537.2323848/94‑1 (MQ=60)
         ACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGG                                                                                     >  SRR4302537.5680677/1‑94 (MQ=60)
          CTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGC                                                                                    >  SRR4302537.1795362/1‑94 (MQ=60)
          CTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGC                                                                                    >  SRR4302537.2347602/1‑94 (MQ=60)
           TAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCA                                                                                   >  SRR4302537.3721080/1‑94 (MQ=60)
            AATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAA                                                                                  >  SRR4302537.2757278/1‑94 (MQ=60)
            AATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAA                                                                                  >  SRR4302537.239725/1‑94 (MQ=60)
             ATTTAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAG                                                                                 >  SRR4302537.4006209/1‑94 (MQ=60)
             ATTAAATCCGAACCTTTTAGGCCCATTGATAGGCGCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGTTCCCCATGGCCAG                                                                                 >  SRR4302537.4006208/1‑94 (MQ=60)
             ATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAG                                                                                 <  SRR4302537.6513124/94‑1 (MQ=60)
             ATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAG                                                                                 <  SRR4302537.1446281/94‑1 (MQ=60)
             ATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGAAAG                                                                                 <  SRR4302537.4381983/94‑1 (MQ=60)
              TTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGA                                                                                >  SRR4302537.2660113/1‑94 (MQ=60)
              TTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGA                                                                                <  SRR4302537.4039913/94‑1 (MQ=60)
               TAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAA                                                                               <  SRR4302537.6307601/94‑1 (MQ=60)
                AAATCCGAACCTTTTAGGCCCATTGATAGGCGCAACGAAAAGCTCTATTGTGTACGTTGGACCTAAACGCAGGGAGGCTCCCCATGGCAAGAAA                                                                              <  SRR4302537.2840448/94‑1 (MQ=60)
                AAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAA                                                                              <  SRR4302537.2400833/94‑1 (MQ=60)
                AAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATAGCAAGAAA                                                                              >  SRR4302537.108601/1‑94 (MQ=60)
                   TCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAAC                                                                           >  SRR4302537.4869726/1‑94 (MQ=60)
                   TCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAAC                                                                           <  SRR4302537.4982337/94‑1 (MQ=60)
                   ACCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGATTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAAC                                                                           <  SRR4302537.4221266/94‑1 (MQ=60)
                     CGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCA                                                                         >  SRR4302537.6382602/1‑94 (MQ=60)
                      GAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAA                                                                        >  SRR4302537.4206558/1‑94 (MQ=60)
                       AACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAG                                                                       >  SRR4302537.5688021/1‑94 (MQ=60)
                       AACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAG                                                                       >  SRR4302537.2154516/1‑94 (MQ=60)
                       AACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAC                                                                       >  SRR4302537.4308725/1‑94 (MQ=60)
                        ACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGC                                                                      >  SRR4302537.3030383/1‑94 (MQ=60)
                         CCTTTTACGCACATTGATAGGCCCAACGAAAAGCTCTATTGTTTGCGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCC                                                                     <  SRR4302537.6220571/94‑1 (MQ=60)
                          CTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCG                                                                    >  SRR4302537.5392194/1‑94 (MQ=60)
                          CTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCG                                                                    >  SRR4302537.5802938/1‑94 (MQ=60)
                          CTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCG                                                                    >  SRR4302537.5646527/1‑94 (MQ=60)
                           TTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGT                                                                   >  SRR4302537.6132406/1‑94 (MQ=60)
                           TTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCACCGAGGCTCCCTATGTCAAGCAAAACCAAGACGT                                                                   >  SRR4302537.4046665/1‑94 (MQ=60)
                            TTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTT                                                                  >  SRR4302537.4517434/1‑94 (MQ=60)
                            TTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTT                                                                  >  SRR4302537.5372428/1‑94 (MQ=60)
                            TTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTT                                                                  >  SRR4302537.5094088/1‑94 (MQ=60)
                             TTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTA                                                                 <  SRR4302537.5775775/94‑1 (MQ=60)
                              TAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAA                                                                >  SRR4302537.141462/1‑94 (MQ=60)
                               AGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAAC                                                               >  SRR4302537.2613828/1‑94 (MQ=60)
                               AGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAAC                                                               >  SRR4302537.3733301/1‑94 (MQ=60)
                               AGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCCCCCCCTGGCAAGAAAAACCAAGCCGTTAAC                                                               >  SRR4302537.4812535/1‑94 (MQ=60)
                                GGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACT                                                              <  SRR4302537.1577575/94‑1 (MQ=60)
                                GGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACT                                                              >  SRR4302537.1737137/1‑94 (MQ=60)
                                GGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACT                                                              <  SRR4302537.2261432/94‑1 (MQ=60)
                                GGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACT                                                              <  SRR4302537.2647867/94‑1 (MQ=60)
                                  CCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGA                                                            >  SRR4302537.1357269/1‑94 (MQ=60)
                                  CCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGA                                                            >  SRR4302537.6020704/1‑94 (MQ=60)
                                   CCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGAT                                                           >  SRR4302537.3127160/1‑94 (MQ=60)
                                    CATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATA                                                          <  SRR4302537.368912/94‑1 (MQ=60)
                                    CATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATA                                                          >  SRR4302537.3026503/1‑94 (MQ=60)
                                     ATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATAC                                                         >  SRR4302537.5447615/1‑94 (MQ=60)
                                     ATTGATAGGCCCAACGAAAAGCTCTATTGTTGACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATAC                                                         <  SRR4302537.2119070/94‑1 (MQ=60)
                                       TGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGG                                                       <  SRR4302537.5350175/94‑1 (MQ=60)
                                       TGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGG                                                       <  SRR4302537.5290209/94‑1 (MQ=60)
                                       TGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGG                                                       <  SRR4302537.5374981/94‑1 (MQ=60)
                                        GATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGA                                                      >  SRR4302537.4695661/1‑94 (MQ=60)
                                        GATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGA                                                      <  SRR4302537.4504684/94‑1 (MQ=60)
                                         ATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAA                                                     >  SRR4302537.553964/1‑94 (MQ=60)
                                         ATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAA                                                     <  SRR4302537.5190516/94‑1 (MQ=60)
                                         ATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAA                                                     >  SRR4302537.2084100/1‑94 (MQ=60)
                                         ATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAA                                                     >  SRR4302537.4192839/1‑94 (MQ=60)
                                           AGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAAT                                                   <  SRR4302537.4709257/94‑1 (MQ=60)
                                           AGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAAT                                                   <  SRR4302537.2669340/94‑1 (MQ=60)
                                            GGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATC                                                  <  SRR4302537.5252994/94‑1 (MQ=60)
                                             GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCA                                                 <  SRR4302537.4081097/94‑1 (MQ=60)
                                             GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCA                                                 >  SRR4302537.6394997/1‑94 (MQ=60)
                                              CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTGAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAA                                                >  SRR4302537.6350668/1‑94 (MQ=60)
                                              CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAA                                                >  SRR4302537.6218742/1‑94 (MQ=60)
                                              CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAA                                                >  SRR4302537.1668238/1‑94 (MQ=60)
                                               CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAA                                               <  SRR4302537.3333743/94‑1 (MQ=60)
                                               CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCAGGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAA                                               <  SRR4302537.4191232/94‑1 (MQ=60)
                                                CAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAG                                              <  SRR4302537.4458668/94‑1 (MQ=60)
                                                CAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAG                                              <  SRR4302537.6485430/94‑1 (MQ=60)
                                                 AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGC                                             <  SRR4302537.5987316/94‑1 (MQ=60)
                                                  ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCC                                            <  SRR4302537.4822682/94‑1 (MQ=60)
                                                   CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCG                                           >  SRR4302537.2052355/1‑94 (MQ=60)
                                                   CGAAAACCTCTATTGTTTACGTGGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCG                                           <  SRR4302537.4856351/94‑1 (MQ=60)
                                                    GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGC                                          >  SRR4302537.2706082/1‑94 (MQ=60)
                                                    GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGC                                          >  SRR4302537.5744642/1‑94 (MQ=60)
                                                      AAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCA                                        >  SRR4302537.4647521/1‑94 (MQ=60)
                                                      AAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCA                                        >  SRR4302537.5882183/1‑94 (MQ=60)
                                                      AAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCA                                        >  SRR4302537.4285829/1‑94 (MQ=60)
                                                       AAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA                                       >  SRR4302537.2852172/1‑94 (MQ=60)
                                                       AAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA                                       >  SRR4302537.2711595/1‑94 (MQ=60)
                                                        AGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAC                                      >  SRR4302537.5006613/1‑94 (MQ=60)
                                                        AGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAA                                      >  SRR4302537.5939770/1‑94 (MQ=60)
                                                        AGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAA                                      >  SRR4302537.2997365/1‑94 (MQ=60)
                                                        AGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAA                                      >  SRR4302537.2727273/1‑94 (MQ=60)
                                                         GCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAAC                                     >  SRR4302537.5873850/1‑94 (MQ=60)
                                                         GCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAAC                                     <  SRR4302537.4803449/94‑1 (MQ=60)
                                                          CTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACC                                    >  SRR4302537.3654061/1‑94 (MQ=60)
                                                           TCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCT                                   <  SRR4302537.1303848/94‑1 (MQ=60)
                                                           TCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCT                                   <  SRR4302537.6049876/94‑1 (MQ=60)
                                                           TCTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCT                                   >  SRR4302537.3512524/1‑94 (MQ=60)
                                                            CTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTA                                  >  SRR4302537.1493123/1‑94 (MQ=60)
                                                            CTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTA                                  >  SRR4302537.1665104/1‑94 (MQ=60)
                                                            CTATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGGTAACTGATACGGAAATCAAAGCCGCCAAACCTA                                  >  SRR4302537.5861953/1‑94 (MQ=60)
                                                             TATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAA                                 >  SRR4302537.1474847/1‑94 (MQ=60)
                                                              ATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCACACCTAAA                                >  SRR4302537.2900229/1‑94 (MQ=60)
                                                              ATTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAA                                <  SRR4302537.5877602/94‑1 (MQ=60)
                                                               TTGTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAG                               >  SRR4302537.6493322/1‑94 (MQ=60)
                                                                TGTTTAGGTTGGCCCTAACCGCAGGGAGGCTCCCCATGCAAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGA                              <  SRR4302537.206435/94‑1 (MQ=60)
                                                                 GTTTACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGAT                             <  SRR4302537.4939461/94‑1 (MQ=60)
                                                                    TACGTTGGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCC                          >  SRR4302537.1957551/1‑94 (MQ=60)
                                                                          GGGCCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTAC                    >  SRR4302537.2610074/1‑94 (MQ=60)
                                                                             CCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAG                 >  SRR4302537.1329824/1‑94 (MQ=60)
                                                                             CCTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAG                 >  SRR4302537.1817369/1‑94 (MQ=60)
                                                                              CTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGC                >  SRR4302537.1401630/1‑94 (MQ=60)
                                                                              CTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGC                >  SRR4302537.1378617/1‑94 (MQ=60)
                                                                              CTAAACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGC                >  SRR4302537.3831294/1‑94 (MQ=60)
                                                                               TAAACGCAGGGAGGCTCCCCATGGCAAGAAAACCCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCT               <  SRR4302537.3090580/94‑1 (MQ=60)
                                                                                 ACCGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTT             <  SRR4302537.5861779/94‑1 (MQ=60)
                                                                                 AACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTT             <  SRR4302537.4887099/94‑1 (MQ=60)
                                                                                  ACGCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTA            <  SRR4302537.4403767/94‑1 (MQ=60)
                                                                                    GCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATG          <  SRR4302537.3929308/94‑1 (MQ=60)
                                                                                    GCAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATG          >  SRR4302537.1294924/1‑94 (MQ=60)
                                                                                    GCAGGGAGGCTCCCAATGGCAAGAAAAACAAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATG          <  SRR4302537.3305092/94‑1 (MQ=60)
                                                                                     CAGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGA         >  SRR4302537.3541658/1‑94 (MQ=60)
                                                                                      AGGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGAC        >  SRR4302537.1067440/1‑94 (MQ=60)
                                                                                      AGGGAGCCTCCCCATGCAAAAAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGAC        <  SRR4302537.3331722/94‑1 (MQ=60)
                                                                                       GGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACG       >  SRR4302537.2845396/1‑94 (MQ=60)
                                                                                       GGGAGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACG       >  SRR4302537.5218512/1‑94 (MQ=60)
                                                                                       GGGAGGCTCCCCAGGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACG       <  SRR4302537.553310/94‑1 (MQ=60)
                                                                                         GAGACGCCCAAGGGCAACAAAAACCAAGCCGTTAACTGATACGAAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGT     <  SRR4302537.2243110/94‑1 (MQ=60)
                                                                                          AGGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTG    >  SRR4302537.2597167/1‑94 (MQ=60)
                                                                                           GGCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGA   <  SRR4302537.3425509/94‑1 (MQ=60)
                                                                                            GCTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGAC  >  SRR4302537.4019432/1‑94 (MQ=60)
                                                                                            |                                                                                             
CCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAAACCTAAAGATGCCGATTACCAGCTTTATGACGGTGAC  >  NC_000913/2754081‑2754266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑