Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,766,427 |
2 bp→AC |
coding (697‑698/864 nt) |
b2632 → |
putative GTP‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,766,427 | 0 | T | A | 99.5%
| 643.3
/ NA
| 189 | W233T (TGG→ACG) | b2632 | putative GTP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (80/108); minor base C (0/1); total (80/109) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| * | NC_000913 | 2,766,428 | 0 | G | C | 100.0%
| 629.5
/ NA
| 189 | W233T (TGG→ACG) | b2632 | putative GTP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (80/109); total (80/109) |
Only 100 of 196 total aligned reads displayed.
AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATT > NC_000913/2766340‑2766510
||
aGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCGGGTAGTAGCGCTACTGCAACATCCCTTTCGAACACCGGTa < 2:5589786/93‑1 (MQ=25)
aGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTa > 2:6173797/1‑93 (MQ=25)
aGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTa > 1:3872563/1‑93 (MQ=25)
gggTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAg > 2:1199950/1‑93 (MQ=21)
gggTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAg > 2:2755785/1‑93 (MQ=21)
gTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGca < 1:6351037/93‑2 (MQ=25)
tGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGccc < 1:930921/93‑1 (MQ=25)
tGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGccc < 1:2090548/93‑1 (MQ=21)
ggCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGa < 1:4456115/93‑1 (MQ=25)
cAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTATCCCGGGAGc > 1:1978095/1‑93 (MQ=21)
agagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCa > 2:3604812/1‑93 (MQ=25)
gagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAg < 1:6110714/93‑1 (MQ=25)
gagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAg > 2:6006242/1‑93 (MQ=21)
gagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAg < 1:4832448/93‑1 (MQ=25)
gagCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAg > 2:4149319/1‑93 (MQ=21)
cGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCa < 1:3212908/93‑1 (MQ=255)
atgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGt < 1:382206/93‑1 (MQ=255)
tgatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTg > 2:4245947/1‑93 (MQ=255)
gatTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGa > 2:2275106/1‑93 (MQ=255)
atTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGAc < 2:1352323/93‑1 (MQ=255)
ttAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACg > 2:3957378/1‑93 (MQ=255)
aGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGAtt > 2:4183021/1‑93 (MQ=255)
gtgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGAttt < 1:5479856/93‑1 (MQ=255)
gtgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGAttt < 1:2630531/93‑1 (MQ=255)
tgtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTc < 1:1126226/93‑1 (MQ=255)
gtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCg < 1:2911661/93‑1 (MQ=255)
gtCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCg > 2:2866636/1‑93 (MQ=255)
tCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCgg < 1:2917824/93‑1 (MQ=255)
tCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCgg < 2:1743971/93‑1 (MQ=255)
tGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTg > 2:6374202/1‑93 (MQ=255)
tGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTg > 1:936505/1‑93 (MQ=255)
gCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGa > 1:4569720/1‑93 (MQ=255)
gCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGa < 2:1474177/93‑1 (MQ=255)
cgcgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGaaa > 2:698573/1‑93 (MQ=255)
gcgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAAc < 2:6280830/93‑1 (MQ=255)
gcgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAAc < 1:1348670/93‑1 (MQ=255)
cgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAAcc < 2:5457453/93‑1 (MQ=255)
cgTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAAcc < 2:2658221/93‑1 (MQ=255)
gAGGCCAGCAGCCTGATAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTa < 2:2820113/93‑1 (MQ=255)
gAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTa < 2:3862252/93‑1 (MQ=255)
aggccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAg < 2:1589316/90‑1 (MQ=255)
aggccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAg < 2:5292943/90‑1 (MQ=255)
aggccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAg < 2:475148/90‑1 (MQ=255)
aggccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAg < 1:398481/90‑1 (MQ=255)
ggccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAgg < 1:6173797/91‑2 (MQ=255)
ggccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAgg > 2:2345574/3‑92 (MQ=255)
agccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAgg < 1:5336830/91‑2 (MQ=255)
gccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAggt < 2:1550760/92‑3 (MQ=255)
ccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAggtg > 2:4674359/1‑90 (MQ=255)
ccAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAggtg < 2:3354458/93‑4 (MQ=255)
cagcagCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAggtgc > 1:360978/1‑89 (MQ=255)
agcCCGGTAGTAGCGCTACTGCAACATGCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATa < 1:4324469/93‑1 (MQ=255)
agcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATa < 1:816981/93‑1 (MQ=255)
gcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAc < 2:4976464/93‑1 (MQ=255)
gcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAc < 2:4329129/93‑1 (MQ=255)
gcCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAc > 2:2172082/1‑93 (MQ=255)
cccGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACt > 1:52609/1‑93 (MQ=255)
cccGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACt > 2:2028932/1‑93 (MQ=255)
ccGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGCGCCATACTc > 2:1039678/1‑93 (MQ=255)
cGGTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCg < 2:3003326/93‑1 (MQ=255)
ggTAGTAGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGa > 1:3664450/1‑93 (MQ=255)
gtagtaGCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGAt < 2:3633334/93‑1 (MQ=255)
tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa < 2:2684559/93‑1 (MQ=255)
tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa < 2:1844720/93‑1 (MQ=255)
tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa < 1:2862001/93‑1 (MQ=255)
tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa > 2:113737/1‑93 (MQ=255)
tagtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATa < 1:571262/93‑1 (MQ=255)
agtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAc < 2:3405532/93‑1 (MQ=255)
agtagCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAc > 1:1555864/1‑93 (MQ=255)
agCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGt > 2:4709971/1‑93 (MQ=255)
agCGCTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGt < 1:1898842/93‑1 (MQ=255)
gcgcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTa > 1:4217595/1‑93 (MQ=255)
gcgcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTa < 1:3038262/93‑1 (MQ=255)
cgcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTaa < 1:2651962/93‑1 (MQ=255)
cgcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTaa < 2:6109901/93‑1 (MQ=255)
gcTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAg < 2:5909727/93‑1 (MQ=255)
cTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGc > 2:830673/1‑93 (MQ=255)
cTACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGc < 2:337589/93‑1 (MQ=255)
tACTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCa > 1:2375916/1‑93 (MQ=255)
aCTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAc < 1:1215115/93‑1 (MQ=255)
cTGCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCAcc > 1:1044869/1‑93 (MQ=255)
gCAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCtt < 2:2551629/93‑1 (MQ=255)
gaaCATCCCTTTCGAACAGCGGCACCCCGGTAGCAGGCAGTTGACGATTTGGGTTAAACGGTATGTGCCATTCTCGAGACGGTAAGCACCttt < 2:2930937/92‑1 (MQ=255)
cAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCttt < 2:905717/93‑1 (MQ=255)
cAACATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCttt < 1:2595794/93‑1 (MQ=255)
aaCATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTc > 2:5015934/1‑93 (MQ=255)
aaCATCCCTTTCGAACAACGGTAACCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGCTACGGTAAGCACCTTTc > 2:3029056/1‑93 (MQ=255)
cATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTccc < 2:1681372/93‑1 (MQ=255)
cATCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTccc > 1:4392536/1‑93 (MQ=255)
aTCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTcccc < 1:106206/93‑1 (MQ=255)
tCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCt > 2:5342257/1‑93 (MQ=255)
tCCCTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCt > 1:5080015/1‑93 (MQ=255)
cccTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCtt > 1:2515491/1‑93 (MQ=255)
ccTTTCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTa > 1:5760696/1‑93 (MQ=255)
cTTTCGAACAACGCTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAt < 2:3471816/93‑1 (MQ=255)
tttCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAtt < 2:4377649/93‑1 (MQ=255)
tttCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAtt < 2:5245858/93‑1 (MQ=255)
tttCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAtt < 2:2059946/93‑1 (MQ=255)
tttCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAtt > 1:655792/1‑93 (MQ=255)
tttCGAACAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAtt > 1:3579655/1‑93 (MQ=255)
||
AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGACATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATT > NC_000913/2766340‑2766510
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGA‑CATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATT > NC_000913/2766340‑2766510
|
AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAG < SRR4302537.4160152/94‑1 (MQ=60)
AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAG > SRR4302537.4590773/1‑94 (MQ=60)
AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAG > SRR4302537.5555123/1‑94 (MQ=60)
GGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGC < SRR4302537.881560/94‑1 (MQ=60)
GTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCC > SRR4302537.1316828/1‑94 (MQ=60)
GTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCC > SRR4302537.1651738/1‑94 (MQ=60)
TGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCG < SRR4302537.937336/94‑1 (MQ=60)
TGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCG < SRR4302537.2105290/94‑1 (MQ=60)
GATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGG < SRR4302537.2935714/94‑1 (MQ=60)
ATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGG > SRR4302537.2839662/1‑94 (MQ=60)
ATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGG < SRR4302537.2961851/94‑1 (MQ=60)
ATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGG < SRR4302537.6201509/94‑1 (MQ=60)
GGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAG < SRR4302537.4486888/94‑1 (MQ=60)
GGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAG < SRR4302537.4057300/94‑1 (MQ=60)
GCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTATCCCGGGAGC > SRR4302537.1991841/1‑94 (MQ=60)
AGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAG < SRR4302537.1379360/94‑1 (MQ=60)
AGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAG < SRR4302537.1101530/94‑1 (MQ=60)
AGAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAG < SRR4302537.360531/94‑1 (MQ=60)
GAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGG < SRR4302537.4865816/94‑1 (MQ=60)
GAGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGG < SRR4302537.6152709/94‑1 (MQ=60)
AGCGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGC > SRR4302537.5780242/1‑94 (MQ=60)
CGGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCAC < SRR4302537.3235512/94‑1 (MQ=60)
GGATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCC‑TTCGGACCAACGGTAGCCCGGGAGCAGGCACG > SRR4302537.1061488/1‑94 (MQ=60)
GATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGT > SRR4302537.941236/1‑94 (MQ=60)
ATGATTAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTG < SRR4302537.384853/94‑1 (MQ=60)
TAAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGAT > SRR4302537.2193946/1‑94 (MQ=60)
AAGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATT > SRR4302537.3888056/1‑94 (MQ=60)
AGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTATCCCGGGAGCAGGCACGTGACGATTT > SRR4302537.4000275/1‑94 (MQ=60)
AGTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCCGGCACGTGACGATTT > SRR4302537.93560/1‑94 (MQ=60)
GTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTC < SRR4302537.5517267/94‑1 (MQ=60)
GTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTC < SRR4302537.2648950/94‑1 (MQ=60)
GTGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTC < SRR4302537.3801959/94‑1 (MQ=60)
TGTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCG < SRR4302537.1134034/94‑1 (MQ=60)
GTCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGG < SRR4302537.2932116/94‑1 (MQ=60)
TCTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGT < SRR4302537.2938326/94‑1 (MQ=60)
CTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTG > SRR4302537.1926590/1‑94 (MQ=60)
CTGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTG > SRR4302537.942957/1‑94 (MQ=60)
TGCCGCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGA > SRR4302537.4601346/1‑94 (MQ=60)
CGCGTGAGGCCAGCAGTCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAAC < SRR4302537.2029884/94‑1 (MQ=60)
GCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACC < SRR4302537.4927992/94‑1 (MQ=60)
GCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACC < SRR4302537.1358069/94‑1 (MQ=60)
GCGTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACC < SRR4302537.3172100/94‑1 (MQ=60)
GTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGT > SRR4302537.5988160/1‑94 (MQ=60)
GTGAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGT > SRR4302537.4469660/1‑94 (MQ=60)
GAGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAG < SRR4302537.5453318/94‑1 (MQ=60)
AGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGG < SRR4302537.1134855/94‑1 (MQ=60)
AGGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGG < SRR4302537.401246/94‑1 (MQ=60)
agCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGT < SRR4302537.5373420/92‑1 (MQ=60)
GGCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGT < SRR4302537.6216317/94‑1 (MQ=60)
gccgGCAGCCCGGTAGTAGCGCTACTGCAACAGCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGgtg < SRR4302537.147445/90‑4 (MQ=60)
CCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGgtgc > SRR4302537.363489/1‑90 (MQ=60)
CAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGgtgcc > SRR4302537.851948/1‑89 (MQ=60)
GCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCAT < SRR4302537.881190/94‑1 (MQ=60)
AGCCCGGTAGTAGCGCTACTGCAACATGCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAC < SRR4302537.4354534/94‑1 (MQ=60)
AGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAC < SRR4302537.822594/94‑1 (MQ=60)
AGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATAC > SRR4302537.816561/1‑94 (MQ=60)
GCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACT > SRR4302537.52997/1‑94 (MQ=60)
CCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCG < SRR4302537.2616685/94‑1 (MQ=60)
CCGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGCGACGATTTCGGTGAAACCGTAGGTGCCATACTTG > SRR4302537.4378953/1‑94 (MQ=60)
CGGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGA > SRR4302537.3690244/1‑94 (MQ=60)
GGTAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGAT < SRR4302537.6442703/94‑1 (MQ=60)
TAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAC < SRR4302537.2882067/94‑1 (MQ=60)
TAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAC > SRR4302537.1566720/1‑94 (MQ=60)
TAGTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATAC < SRR4302537.575184/94‑1 (MQ=60)
GTAGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGG > SRR4302537.5331502/1‑94 (MQ=60)
AGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTA < SRR4302537.1912032/94‑1 (MQ=60)
AGCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTA > SRR4302537.4246994/1‑94 (MQ=60)
GCGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAA < SRR4302537.3059432/94‑1 (MQ=60)
CGCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAG < SRR4302537.2670508/94‑1 (MQ=60)
GCTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGC < SRR4302537.2416545/94‑1 (MQ=60)
CTACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCA > SRR4302537.2392656/1‑94 (MQ=60)
ACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACC > SRR4302537.1052081/1‑94 (MQ=60)
ACTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACC < SRR4302537.1223568/94‑1 (MQ=60)
CTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCT > SRR4302537.6376705/1‑94 (MQ=60)
CTGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCT < SRR4302537.4633392/94‑1 (MQ=60)
TGCAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTT < SRR4302537.3666078/94‑1 (MQ=60)
CAACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTC < SRR4302537.2613954/94‑1 (MQ=60)
AACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCC < SRR4302537.291004/94‑1 (MQ=60)
AACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCC > SRR4302537.3465382/1‑94 (MQ=60)
ACATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCC > SRR4302537.4422844/1‑94 (MQ=60)
ATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCT < SRR4302537.5129857/94‑1 (MQ=60)
ATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCT < SRR4302537.106973/94‑1 (MQ=60)
ATCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCT > SRR4302537.5114985/1‑94 (MQ=60)
TCCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTT > SRR4302537.2533168/1‑94 (MQ=60)
CCCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTA > SRR4302537.5800156/1‑94 (MQ=60)
CCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAT > SRR4302537.5278092/1‑94 (MQ=60)
CCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAT < SRR4302537.2590667/94‑1 (MQ=60)
CCTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTAT < SRR4302537.2660826/94‑1 (MQ=60)
CTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATT > SRR4302537.660263/1‑94 (MQ=60)
CTTTCGAA‑CAACGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGGTGCCATACTCGATACGGTAAGCACCTTTCCCCTTATT > SRR4302537.3604887/1‑94 (MQ=60)
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AGGGTGATGGCAGAGCGGATGATTAAGTGTCTGCCGCGTGAGCCCAGCAGCCCGGTAGTAGCGCTACTGCAACATCCCTTTCGGA‑CATGGGTAGCCCGGGAGCAGGCACGTGACGATTTCGGTGAAACCGTAGATACCATACTCGATACGGTAAGCACCTTTCCCCTTATT > NC_000913/2766340‑2766510
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
