Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,785,180 |
Δ1 bp |
coding (413/495 nt) |
b2655 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,785,180 | 0 | T | . | 100.0%
| 1089.1
/ NA
| 230 | coding (413/495 nt) | b2655 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (117/113); total (117/113) |
Only 100 of 233 total aligned reads displayed.
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA > NC_000913/2785092‑2785267
|
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc > 2:1247471/1‑93 (MQ=255)
aCCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAc > 2:5986900/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:470861/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:4515399/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:4201450/1‑93 (MQ=255)
ccTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACg > 2:2192199/1‑93 (MQ=255)
cTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACgg > 2:3797343/1‑93 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc < 1:768666/93‑1 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc < 1:3142751/93‑1 (MQ=255)
aCCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAc < 2:3720578/93‑1 (MQ=255)
ccAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGAcc < 1:1854983/93‑1 (MQ=255)
cagcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCa < 1:1015821/93‑1 (MQ=255)
cagcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCa > 2:4313314/1‑93 (MQ=255)
cagcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCa < 2:4097782/93‑1 (MQ=255)
agcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAg < 1:2396019/93‑1 (MQ=255)
gcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGa > 2:3686956/1‑93 (MQ=255)
gcagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGa > 2:1771366/1‑93 (MQ=255)
cagATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaa < 1:717967/93‑1 (MQ=255)
agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa > 1:1700719/1‑93 (MQ=255)
agATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGaaa < 2:5946714/93‑1 (MQ=255)
gATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAc > 2:2368174/1‑93 (MQ=255)
gATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAc < 2:5395794/93‑1 (MQ=255)
tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc < 1:5587489/93‑1 (MQ=255)
tCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTc > 2:5792448/1‑93 (MQ=255)
agagAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTccc > 1:1823617/1‑93 (MQ=255)
agagAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTccc < 1:403811/93‑1 (MQ=255)
gagaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCg > 1:1831023/1‑93 (MQ=255)
gagaAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCg > 1:2748413/1‑93 (MQ=255)
aaaaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaag < 1:666856/93‑1 (MQ=255)
aaaTATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaaga < 1:4431494/93‑1 (MQ=255)
atatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaag < 1:5332849/93‑1 (MQ=255)
tatGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCgaagaaga > 2:5125866/1‑93 (MQ=255)
tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa > 1:1770015/1‑93 (MQ=255)
tGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaa < 2:4617058/93‑1 (MQ=255)
gTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaaa > 2:3345457/1‑93 (MQ=255)
gTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGaaaa < 1:2778839/93‑1 (MQ=255)
tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg > 1:2586741/1‑93 (MQ=255)
tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg < 1:3262330/93‑1 (MQ=255)
tCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAg < 1:4981666/93‑1 (MQ=255)
cTGAATTTGCACGTCGCCATTATGGGTCTATACAAGTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAACCTCCCGAAGAAGAAAAgg < 1:2460887/93‑1 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg > 2:3383567/1‑93 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg < 2:4956105/93‑1 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg < 1:2884844/93‑1 (MQ=255)
tGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAggg > 1:3337161/1‑93 (MQ=255)
aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt < 1:4937354/93‑1 (MQ=255)
aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt < 1:6312562/93‑1 (MQ=255)
aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt > 2:2109090/1‑93 (MQ=255)
aaTTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGtt < 1:300479/93‑1 (MQ=255)
tttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAATGGTTAc > 2:648878/1‑93 (MQ=255)
tttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTAc < 2:5717943/93‑1 (MQ=255)
ttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACt < 2:288945/93‑1 (MQ=255)
ttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACt > 1:1551501/1‑93 (MQ=255)
ttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACt < 2:5325759/93‑1 (MQ=255)
ttGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACt < 2:5491762/93‑1 (MQ=255)
cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt > 1:5097278/1‑93 (MQ=255)
cGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGttt > 2:2805528/1‑93 (MQ=255)
ttGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCa > 2:3860900/1‑93 (MQ=255)
ttGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCa < 1:2167595/93‑1 (MQ=255)
tGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAt < 1:4606630/93‑1 (MQ=255)
gCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATg > 2:1587012/1‑93 (MQ=255)
gCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATg < 1:5042590/93‑1 (MQ=255)
ccATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGc < 1:2109964/93‑1 (MQ=255)
cATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCt > 2:4945015/1‑93 (MQ=255)
aTTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCtt > 2:607736/1‑93 (MQ=255)
tGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCa > 1:3057615/1‑93 (MQ=255)
tGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCa > 2:2277699/1‑93 (MQ=255)
ggTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAc > 2:1053791/1‑93 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc < 1:1107355/93‑1 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc < 1:4781093/93‑1 (MQ=255)
gTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAcc < 2:2795752/93‑1 (MQ=255)
tatataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAccc > 1:553207/1‑93 (MQ=255)
atataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCg > 1:3885530/1‑93 (MQ=255)
tataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGa < 1:3457997/93‑1 (MQ=255)
ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa < 1:5896805/93‑1 (MQ=255)
ataCAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGaa > 2:1027906/1‑93 (MQ=255)
cAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGCTACTGGTTTCATGCTTATCAACCCGAAGAt > 1:6365093/1‑93 (MQ=255)
agaTCCCTCCAGTGATAACTTTCCGCG‑CCGACGTACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGCTTCATGCTTATCAACGCGAAGATc > 2:6182045/3‑93 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc < 1:5743027/93‑1 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc < 1:5148342/93‑1 (MQ=255)
aaaTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATc > 1:4159689/1‑93 (MQ=255)
aTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCtt > 1:2639666/1‑93 (MQ=255)
cccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTg > 2:5785699/1‑93 (MQ=255)
ccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt > 2:1410132/1‑93 (MQ=255)
ccTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGt > 1:6170809/1‑93 (MQ=255)
cTCCAGTGACAACTTTCCGCG‑CTGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTa < 1:1774722/93‑1 (MQ=255)
cTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTa < 1:4264463/93‑1 (MQ=255)
cTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGGTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTa > 1:5924646/1‑93 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCATCCCGAAGATCTTTGTAcc > 2:2470791/1‑93 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc > 2:2999577/1‑93 (MQ=255)
ccAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAcc > 2:2581634/1‑93 (MQ=255)
gTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatc > 2:1955367/1‑93 (MQ=255)
tGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcc > 2:2939517/1‑93 (MQ=255)
gACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatcca < 1:3557677/93‑1 (MQ=255)
aCAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAccatccat > 2:392409/1‑93 (MQ=255)
cAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATa > 2:3565019/1‑93 (MQ=255)
aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt < 1:2950782/93‑1 (MQ=255)
aCTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAt > 1:1363074/1‑93 (MQ=255)
cTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATc < 2:3410543/93‑1 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa < 1:4098446/93‑1 (MQ=255)
tCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCaa > 2:677439/1‑93 (MQ=255)
|
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAA > NC_000913/2785092‑2785267
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > NC_000913/2785087‑2785273
|
ATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGC > SRR4302537.1227264/1‑94 (MQ=60)
TGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGCC < SRR4302537.751349/94‑1 (MQ=60)
CCACCTACCAGCAGATCAGAGTAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCACTCCAGTGACAACTTTCCGCG‑CCGA > SRR4302537.357120/1‑94 (MQ=60)
CCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGA > SRR4302537.1945542/1‑94 (MQ=60)
CACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGAC < SRR4302537.164682/94‑1 (MQ=60)
ACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACG < SRR4302537.1458108/94‑1 (MQ=60)
CCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGG > SRR4302537.2989829/1‑94 (MQ=60)
CTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGA > SRR4302537.6449198/1‑94 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC < SRR4302537.3164809/94‑1 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC > SRR4302537.1806610/1‑94 (MQ=60)
ACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACC < SRR4302537.773937/94‑1 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA > SRR4302537.4486833/1‑94 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA < SRR4302537.2768079/94‑1 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA < SRR4302537.1867882/94‑1 (MQ=60)
CCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCA < SRR4302537.5766288/94‑1 (MQ=60)
CAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAG > SRR4302537.2437916/1‑94 (MQ=60)
CAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAG < SRR4302537.1022817/94‑1 (MQ=60)
AGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGA < SRR4302537.2412892/94‑1 (MQ=60)
GCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAA > SRR4302537.1590640/1‑94 (MQ=60)
CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA < SRR4302537.722872/94‑1 (MQ=60)
CAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAA > SRR4302537.1712609/1‑94 (MQ=60)
AGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAAC > SRR4302537.4051317/1‑94 (MQ=60)
ATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTC > SRR4302537.5057461/1‑94 (MQ=60)
TCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCC < SRR4302537.5625696/94‑1 (MQ=60)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCG > SRR4302537.2266620/1‑94 (MQ=60)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCC > SRR4302537.1836327/1‑94 (MQ=60)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCC < SRR4302537.852430/94‑1 (MQ=60)
CAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCC > SRR4302537.6459784/1‑94 (MQ=60)
AGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG > SRR4302537.1843773/1‑94 (MQ=60)
AGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG > SRR4302537.2767584/1‑94 (MQ=60)
AGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG < SRR4302537.406614/94‑1 (MQ=60)
AGAGAAAATATGTCTGAATTTGCACGGTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCG > SRR4302537.5114569/1‑94 (MQ=60)
GAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAG < SRR4302537.6404257/94‑1 (MQ=60)
AAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGA > SRR4302537.5956600/1‑94 (MQ=60)
AAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGA < SRR4302537.671411/94‑1 (MQ=60)
AAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAA > SRR4302537.130384/1‑94 (MQ=60)
AAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAA > SRR4302537.4199103/1‑94 (MQ=60)
AAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAA < SRR4302537.4462096/94‑1 (MQ=60)
ATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGA > SRR4302537.4264902/1‑94 (MQ=60)
ATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGA > SRR4302537.2436384/1‑94 (MQ=60)
ATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGA < SRR4302537.5369424/94‑1 (MQ=60)
ATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAA > SRR4302537.1782340/1‑94 (MQ=60)
GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG > SRR4302537.2604839/1‑94 (MQ=60)
GTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAG < SRR4302537.2798271/94‑1 (MQ=60)
TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG < SRR4302537.3285341/94‑1 (MQ=60)
TCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGG < SRR4302537.5016001/94‑1 (MQ=60)
CTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGG > SRR4302537.3360781/1‑94 (MQ=60)
CTGAATTTGCACGTCGCCATTATGGGTCTATACAAGTCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAACCTCCCGAAGAAGAAAAGGG < SRR4302537.2478191/94‑1 (MQ=60)
TGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGT < SRR4302537.2905090/94‑1 (MQ=60)
GAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTT > SRR4302537.1029600/1‑94 (MQ=60)
AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA < SRR4302537.4971408/94‑1 (MQ=60)
AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA < SRR4302537.302574/94‑1 (MQ=60)
AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA < SRR4302537.5234398/94‑1 (MQ=60)
AATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTA < SRR4302537.6355772/94‑1 (MQ=60)
TTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACT > SRR4302537.1562324/1‑94 (MQ=60)
TTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTG < SRR4302537.3974265/94‑1 (MQ=60)
TGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG > SRR4302537.2514620/1‑94 (MQ=60)
TGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGG < SRR4302537.2051076/94‑1 (MQ=60)
CACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTT > SRR4302537.170708/1‑94 (MQ=60)
ACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTT > SRR4302537.3523070/1‑94 (MQ=60)
ACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTT > SRR4302537.5132379/1‑94 (MQ=60)
CGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTC > SRR4302537.366081/1‑94 (MQ=60)
TTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAT > SRR4302537.3209506/1‑94 (MQ=60)
TTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAT < SRR4302537.2182863/94‑1 (MQ=60)
TTGCCATTATGGGTATATACAAATCCCTCCAGCGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCAT < SRR4302537.1936501/94‑1 (MQ=60)
TGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG < SRR4302537.6219538/94‑1 (MQ=60)
TGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATG < SRR4302537.4638529/94‑1 (MQ=60)
GCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGC > SRR4302537.29537/1‑94 (MQ=60)
GCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGC < SRR4302537.5077316/94‑1 (MQ=60)
CCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCT < SRR4302537.2124838/94‑1 (MQ=60)
CCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCT > SRR4302537.4746650/1‑94 (MQ=60)
CATTATGGGTATATACAAATCCCTCCAGTTACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTT > SRR4302537.739379/1‑94 (MQ=60)
CATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTT > SRR4302537.1860622/1‑94 (MQ=60)
ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA < SRR4302537.5052613/94‑1 (MQ=60)
ATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTA < SRR4302537.5164902/94‑1 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA > SRR4302537.3078920/1‑94 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA > SRR4302537.2659321/1‑94 (MQ=60)
ATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCA > SRR4302537.2800616/1‑94 (MQ=60)
TGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAA < SRR4302537.1785362/94‑1 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC < SRR4302537.3447930/94‑1 (MQ=60)
GGGTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAAC < SRR4302537.4903010/94‑1 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC > SRR4302537.557013/1‑94 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC < SRR4302537.1115005/94‑1 (MQ=60)
GTATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCC < SRR4302537.4814100/94‑1 (MQ=60)
TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG > SRR4302537.1818267/1‑94 (MQ=60)
TATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCG > SRR4302537.3912710/1‑94 (MQ=60)
ATATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGA < SRR4302537.2641528/94‑1 (MQ=60)
TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA > SRR4302537.5403877/1‑94 (MQ=60)
TATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAA < SRR4302537.3482447/94‑1 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG < SRR4302537.5738623/94‑1 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG < SRR4302537.5937265/94‑1 (MQ=60)
ATACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAG < SRR4302537.4349318/94‑1 (MQ=60)
ACAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGCTACTGGTTTCATGCTTATCAACCCGAAGAT > SRR4302537.6408508/1‑94 (MQ=60)
CAAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATC > SRR4302537.4188739/1‑94 (MQ=60)
CAAAGCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATC < SRR4302537.2137796/94‑1 (MQ=60)
AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT < SRR4302537.5183819/94‑1 (MQ=60)
AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT > SRR4302537.3058779/1‑94 (MQ=60)
AAATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCT < SRR4302537.5782348/94‑1 (MQ=60)
AATCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTT > SRR4302537.2658136/1‑94 (MQ=60)
TCCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTG > SRR4302537.2675816/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT > SRR4302537.6213301/1‑94 (MQ=60)
CCCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGT < SRR4302537.5336749/94‑1 (MQ=60)
CCTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGGTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTA > SRR4302537.5965303/1‑94 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CTGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC < SRR4302537.1787078/94‑1 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC < SRR4302537.69275/94‑1 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC > SRR4302537.964499/1‑94 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC < SRR4302537.4294095/94‑1 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC > SRR4302537.3455334/1‑94 (MQ=60)
CTCCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC < SRR4302537.2908253/94‑1 (MQ=60)
CACCAGTGACATCTTTCCGC‑ACCGACGGGCCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAC < SRR4302537.4766469/94‑1 (MQ=60)
CCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCA > SRR4302537.5885888/1‑94 (MQ=60)
CCAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCA < SRR4302537.6025316/94‑1 (MQ=60)
CAGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCAT > SRR4302537.5967388/1‑94 (MQ=60)
AGTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATC > SRR4302537.5594382/1‑94 (MQ=60)
GTGACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCC < SRR4302537.3358204/94‑1 (MQ=60)
GACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCAT < SRR4302537.3582780/94‑1 (MQ=60)
GACAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTAACATCCAT > SRR4302537.3164202/1‑94 (MQ=60)
CAACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAA > SRR4302537.4133445/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302537.1839819/1‑94 (MQ=60)
AACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAAT > SRR4302537.1372569/1‑94 (MQ=60)
ACTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATC < SRR4302537.2971485/94‑1 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC > SRR4302537.1775020/1‑94 (MQ=60)
CTTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCC > SRR4302537.3081026/1‑94 (MQ=60)
TTTCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCA < SRR4302537.4990187/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302537.4105071/94‑1 (MQ=60)
TCCGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAAT < SRR4302537.4127059/94‑1 (MQ=60)
CGCG‑CCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGG > SRR4302537.5216019/1‑94 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > SRR4302537.5082636/1‑94 (MQ=60)
GCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG < SRR4302537.3427696/94‑1 (MQ=60)
|
ATGCCACCTACCAGCAGATCAGAGAAAATATGTCTGAATTTGCACGTTGCCATTATGGGTATATACAAATCCCTCCAGTGACAACTTTCCGCGTCCGACGGACCAGAAACTCCCGAAGAAGAAAAGGGTTACTGGTTTCATGCTTATCAACCCGAAGATCTTTGTACCATCCATAATCCAATGGGAG > NC_000913/2785087‑2785273
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
