Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,821,415	T→C	A126A (GCA→GCG)	recA ←	RecA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,821,415	0	T	C	100.0%	718.3 / NA	207	A126A (GCA→GCG)	recA	RecA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (104/103); total (104/103)

Only 100 of 211 total aligned reads displayed.

GATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTC  >  NC_000913/2821325‑2821504

  tttCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCt                                                                                       >  1:1381800/1‑93 (MQ=255)

   ttCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTg                                                                                      <  2:3307160/93‑1 (MQ=255)

   ttCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTg                                                                                      >  2:3450528/1‑93 (MQ=255)

      cGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTc                                                                                   >  1:3531265/1‑93 (MQ=255)

      cGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTc                                                                                   <  2:4219259/93‑1 (MQ=255)

       gCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCg                                                                                  <  2:2415803/93‑1 (MQ=255)

        cTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGc                                                                                 >  2:4791056/1‑93 (MQ=255)

         tttCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGcc                                                                                >  2:2677494/1‑93 (MQ=255)

         tttCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGcc                                                                                <  2:3038177/93‑1 (MQ=255)

         tttCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGcc                                                                                >  1:765929/1‑93 (MQ=255)

         tttCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGcc                                                                                <  1:1618435/93‑1 (MQ=255)

         tttCGGCGTCAGTGCCGCCACGAAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGcc                                                                                <  1:3352131/93‑1 (MQ=255)

          ttCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCg                                                                               <  2:6412437/93‑1 (MQ=255)

            cGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGgt                                                                             <  1:2456280/93‑1 (MQ=255)

            cGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGgt                                                                             <  2:2212147/93‑1 (MQ=255)

              gCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGgtgt                                                                           <  2:4535455/93‑1 (MQ=255)

              gCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGgtgt                                                                           >  2:1782840/1‑93 (MQ=255)

                gTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTcc                                                                         <  2:1300903/93‑1 (MQ=255)

                 tCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCg                                                                        >  1:4518275/1‑93 (MQ=255)

                  cAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCgg                                                                       >  1:1800561/1‑93 (MQ=255)

                   aGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGc                                                                      <  1:4089816/93‑1 (MQ=255)

                    gtcccgccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCt                                                                     <  2:2297892/90‑1 (MQ=255)

                      gccgccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTgg                                                                   <  1:3717437/93‑1 (MQ=255)

                      gccgccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTgg                                                                   <  1:4611264/93‑1 (MQ=255)

                         gccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAg                                                                >  2:5916442/1‑93 (MQ=255)

                         gccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGATGGGAg                                                                >  1:2990291/1‑93 (MQ=255)

                          ccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGc                                                               >  1:719310/1‑93 (MQ=255)

                          ccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGc                                                               >  1:3856324/1‑93 (MQ=255)

                          ccACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGc                                                               <  1:1198328/93‑1 (MQ=255)

                           cACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGcc                                                              >  2:1754807/1‑92 (MQ=255)

                           cACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGca                                                              <  1:2791763/93‑1 (MQ=255)

                              ggAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCGTGCTCGCCGGTGTCCGGCTCGGAGCAcag                                                           >  1:1064550/1‑93 (MQ=255)

                               gAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCAcagc                                                          <  2:1530528/93‑1 (MQ=255)

                                aGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCAcagca                                                         <  1:3870983/93‑1 (MQ=255)

                                aGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCAcagca                                                         >  2:624213/1‑93 (MQ=255)

                                  tCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAgg                                                       >  1:6040471/1‑93 (MQ=255)

                                    aaCGACGATAACGTCTACTGCGCCAGCACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGtt                                                     <  2:5219530/93‑1 (MQ=255)

                                    aaCGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGtt                                                     <  2:889508/93‑1 (MQ=255)

                                    aaCGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGtt                                                     <  1:4924732/93‑1 (MQ=255)

                                     acgacgATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTg                                                    >  2:3195952/1‑93 (MQ=255)

                                     acgacgATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTg                                                    <  2:1030866/93‑1 (MQ=255)

                                     acgacgATAACGTCTACTGCGCCAGAACGCGACAGGGCGTCACAGATTTCCAGCGCCTGCTCGTCGGAGTCCGGCTGGGAGCACAGCAGGCTg                                                    >  1:5647783/1‑93 (MQ=255)

                                      cgacgaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGt                                                   <  2:5299933/93‑1 (MQ=255)

                                       gacgaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTc                                                  >  1:6125886/1‑93 (MQ=255)

                                         cgaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGa                                                <  2:5538422/93‑1 (MQ=255)

                                         cgaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGa                                                >  1:167291/1‑93 (MQ=255)

                                          gaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGat                                               >  2:4933980/1‑93 (MQ=255)

                                          gaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGat                                               >  1:211390/1‑93 (MQ=255)

                                          gaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGat                                               >  2:754919/1‑93 (MQ=255)

                                          gaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTAGGAGCACAGCAGGTTGTCGat                                               <  1:5793062/93‑1 (MQ=255)

                                          gaTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGACTGGGAGCACAGCAGGTTGTCGat                                               >  1:421240/1‑93 (MQ=255)

                                           aTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGata                                              >  1:2318900/1‑93 (MQ=255)

                                           aTAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGata                                              <  1:3228353/93‑1 (MQ=255)

                                            tAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGatat                                             >  2:2631349/1‑93 (MQ=255)

                                             aaCGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATc                                            <  1:5497676/93‑1 (MQ=255)

                                             aaCGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATc                                            >  1:5237201/1‑93 (MQ=255)

                                              aCGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCg                                           <  2:3645462/93‑1 (MQ=255)

                                              aCGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCg                                           <  1:1479892/93‑1 (MQ=255)

                                               cGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGa                                          <  2:6159354/93‑1 (MQ=255)

                                                 tCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACg                                        >  1:5135629/1‑93 (MQ=255)

                                                 tCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACg                                        >  2:4316516/1‑93 (MQ=255)

                                                  cTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGc                                       >  1:1956708/1‑93 (MQ=255)

                                                  cTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGc                                       >  1:448690/1‑93 (MQ=255)

                                                  cTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGGTGTCGATATCGACGc                                       >  1:3283483/1‑93 (MQ=255)

                                                   tACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGcc                                      <  1:1175104/93‑1 (MQ=255)

                                                    aCTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGccc                                     <  1:4766892/93‑1 (MQ=255)

                                                    aCTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATACCGACGccc                                     <  2:6271179/93‑1 (MQ=255)

                                                         gcCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGttt                                >  2:3955679/1‑93 (MQ=255)

                                                         gcCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGttt                                >  2:6388572/1‑93 (MQ=255)

                                                          ccAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTa                               >  2:6169365/1‑93 (MQ=255)

                                                          ccAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTa                               >  1:6360830/1‑93 (MQ=255)

                                                           cAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTAc                              >  2:1146962/1‑93 (MQ=255)

                                                            aGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACg                             <  2:656165/93‑1 (MQ=255)

                                                             aaaCGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTTGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGt                            <  2:5263683/92‑1 (MQ=255)

                                                              aaCGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTg                           <  2:1084940/93‑1 (MQ=255)

                                                                cgcgCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCg                         <  2:5827537/93‑1 (MQ=255)

                                                                 gcgcCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGt                        <  1:5923544/93‑1 (MQ=255)

                                                                  cgcCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTa                       >  1:1730934/1‑93 (MQ=255)

                                                                    ccAGGGCGTCAGAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGa                     <  1:2863556/93‑1 (MQ=255)

                                                                    ccAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGa                     >  2:4951900/1‑93 (MQ=255)

                                                                       gggCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTg                  >  1:2281830/1‑93 (MQ=255)

                                                                         gCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTggg                <  1:2731867/93‑1 (MQ=255)

                                                                          cGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGt               >  1:6052643/1‑93 (MQ=255)

                                                                           gTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGGGCACAGCAGGTTGTCGGTATCGCCGCCCAGTTTACGTGCCTGGATTggggc              >  2:2856983/1‑91 (MQ=255)

                                                                            tCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTcc             >  1:4976034/1‑93 (MQ=255)

                                                                             cacaGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCa            <  1:1005688/93‑1 (MQ=255)

                                                                              acaGATTGCCAGCGCCTGGTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAg           <  1:874065/93‑1 (MQ=255)

                                                                               caGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgc          <  1:3934514/93‑1 (MQ=255)

                                                                               caGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgc          <  2:5657575/93‑1 (MQ=255)

                                                                               caGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgc          >  2:4889723/1‑93 (MQ=255)

                                                                                aGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgcg         >  2:3757774/1‑93 (MQ=255)

                                                                                 gATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgcgc        >  1:3425033/1‑93 (MQ=255)

                                                                                 gATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgcgc        >  2:1957495/1‑93 (MQ=255)

                                                                                 gATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAgcgc        <  1:6251472/93‑1 (MQ=255)

                                                                                   tttCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCgt      <  2:5057605/93‑1 (MQ=255)

                                                                                   tttCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCgt      >  1:4294478/1‑93 (MQ=255)

                                                                                   tttCCAGCGCCTGCTCGCCGGTGTCCGACTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCgt      <  2:2098074/93‑1 (MQ=255)

                                                                                       cAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTc  <  2:2473900/93‑1 (MQ=255)

                                                                                       cAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTc  <  2:5496549/93‑1 (MQ=255)

                                                                                       cAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTc  <  2:5437417/93‑1 (MQ=255)

GATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTC  >  NC_000913/2821325‑2821504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCGATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCA  >  NC_000913/2821322‑2821508

TTCGATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGC                                                                                               <  SRR4302537.5001925/94‑1 (MQ=60)

 TCGATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCG                                                                                              >  SRR4302537.3473563/1‑94 (MQ=60)

    ATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCT                                                                                           >  SRR4302537.1391441/1‑94 (MQ=60)

     TTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTG                                                                                          >  SRR4302537.4309629/1‑94 (MQ=60)

     TTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTG                                                                                          <  SRR4302537.4788243/94‑1 (MQ=60)

      tacctCTTTCGGCGACAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGC                                                                                         <  SRR4302537.5708141/89‑1 (MQ=60)

        CCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTC                                                                                       >  SRR4302537.3813226/1‑94 (MQ=60)

        CCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTC                                                                                       >  SRR4302537.3556226/1‑94 (MQ=60)

        CCGCTTTCGGCGTCAGTACCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTC                                                                                       >  SRR4302537.1731034/1‑94 (MQ=60)

         CGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCG                                                                                      <  SRR4302537.5954996/94‑1 (MQ=60)

          GCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGC                                                                                     >  SRR4302537.3235501/1‑94 (MQ=60)

          GCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGC                                                                                     >  SRR4302537.6243563/1‑94 (MQ=60)

           CTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCC                                                                                    >  SRR4302537.771175/1‑94 (MQ=60)

            TTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCG                                                                                   <  SRR4302537.1629741/94‑1 (MQ=60)

            TTTCGGCGTCAGTGCCGCCACGAAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCG                                                                                   <  SRR4302537.3375872/94‑1 (MQ=60)

             TTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGG                                                                                  >  SRR4302537.3892259/1‑94 (MQ=60)

              TCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGT                                                                                 >  SRR4302537.1087787/1‑94 (MQ=60)

              TCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGT                                                                                 <  SRR4302537.224411/94‑1 (MQ=60)

               CGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTG                                                                                <  SRR4302537.2473555/94‑1 (MQ=60)

                GGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGT                                                                               >  SRR4302537.327257/1‑94 (MQ=60)

                   GTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCG                                                                            >  SRR4302537.4549529/1‑94 (MQ=60)

                    TCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGG                                                                           >  SRR4302537.1813125/1‑94 (MQ=60)

                    TCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGG                                                                           <  SRR4302537.744759/94‑1 (MQ=60)

                      AGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCT                                                                         <  SRR4302537.4118378/94‑1 (MQ=60)

                      AGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCT                                                                         <  SRR4302537.3911210/94‑1 (MQ=60)

                       GTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTG                                                                        <  SRR4302537.5024847/94‑1 (MQ=60)

                        TGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGG                                                                       <  SRR4302537.2826112/94‑1 (MQ=60)

                        TGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGG                                                                       <  SRR4302537.4122752/94‑1 (MQ=60)

                        TCCCGCCACGGAGTCAACGACGATAACGTCTCCGGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGG                                                                       <  SRR4302537.1455003/94‑1 (MQ=60)

                         GCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGG                                                                      <  SRR4302537.4643195/94‑1 (MQ=60)

                         GCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGG                                                                      <  SRR4302537.3743565/94‑1 (MQ=60)

                          CCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGA                                                                     <  SRR4302537.3636958/94‑1 (MQ=60)

                          CCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGA                                                                     <  SRR4302537.611015/94‑1 (MQ=60)

                           CGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAG                                                                    <  SRR4302537.2664694/94‑1 (MQ=60)

                           CGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAG                                                                    >  SRR4302537.6342233/1‑94 (MQ=60)

                           CGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAG                                                                    >  SRR4302537.106418/1‑94 (MQ=60)

                           CGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGATGGGAG                                                                    >  SRR4302537.3011170/1‑94 (MQ=60)

                            GCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGC                                                                   >  SRR4302537.3883315/1‑94 (MQ=60)

                            GCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGC                                                                   <  SRR4302537.5586715/94‑1 (MQ=60)

                            GCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGC                                                                   >  SRR4302537.724225/1‑94 (MQ=60)

                             CCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCA                                                                  <  SRR4302537.1206655/94‑1 (MQ=60)

                              CACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCAC                                                                 <  SRR4302537.2811276/94‑1 (MQ=60)

                                CGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCGTGCTCGCCGGTGTCCGGCTCGGAGCACAG                                                               >  SRR4302537.1071883/1‑94 (MQ=60)

                                 GGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGC                                                              <  SRR4302537.994426/94‑1 (MQ=60)

                                   AGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAG                                                            <  SRR4302537.3898072/94‑1 (MQ=60)

                                    GTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGG                                                           >  SRR4302537.6081969/1‑94 (MQ=60)

                                       AACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTG                                                        >  SRR4302537.6456110/1‑94 (MQ=60)

                                       AACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTG                                                        <  SRR4302537.1914116/94‑1 (MQ=60)

                                       AACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTG                                                        <  SRR4302537.1353432/94‑1 (MQ=60)

                                       AACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTG                                                        <  SRR4302537.4958687/94‑1 (MQ=60)

                                       AACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTG                                                        <  SRR4302537.5743570/94‑1 (MQ=60)

                                       AACGACGATAACGTCTACTGCGCCAGAACGCGACAGGGCGTCACAGATTTCCAGCGCCTGCTCGTCGGAGTCCGGCTGGGAGCACAGCAGGCTG                                                        >  SRR4302537.5686439/1‑94 (MQ=60)

                                        ACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGT                                                       <  SRR4302537.246454/94‑1 (MQ=60)

                                         CGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTG                                                      >  SRR4302537.4984357/1‑94 (MQ=60)

                                         CGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTC                                                      >  SRR4302537.6167992/1‑94 (MQ=60)

                                         CGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTC                                                      <  SRR4302537.3315885/94‑1 (MQ=60)

                                           ACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGA                                                    >  SRR4302537.168484/1‑94 (MQ=60)

                                            CGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGAT                                                   >  SRR4302537.4467694/1‑94 (MQ=60)

                                            CGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGAT                                                   >  SRR4302537.212901/1‑94 (MQ=60)

                                            CGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGACTGGGAGCACAGCAGGTTGTCGAT                                                   >  SRR4302537.424160/1‑94 (MQ=60)

                                             GATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATA                                                  >  SRR4302537.2335275/1‑94 (MQ=60)

                                             GATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTAGGAGCACAGCAGGTTGTCGATA                                                  <  SRR4302537.5832776/94‑1 (MQ=60)

                                              ATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATAT                                                 <  SRR4302537.3251104/94‑1 (MQ=60)

                                              ATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATAT                                                 >  SRR4302537.5012737/1‑94 (MQ=60)

                                               TAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATC                                                >  SRR4302537.5273236/1‑94 (MQ=60)

                                                AACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCG                                               <  SRR4302537.5180513/94‑1 (MQ=60)

                                                AACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCG                                               <  SRR4302537.5535209/94‑1 (MQ=60)

                                                 ACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGA                                              <  SRR4302537.1490184/94‑1 (MQ=60)

                                                 ACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGGTGTCGATATCGA                                              >  SRR4302537.4908879/1‑94 (MQ=60)

                                                   GTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACG                                            >  SRR4302537.5171013/1‑94 (MQ=60)

                                                   GTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACG                                            <  SRR4302537.3525633/94‑1 (MQ=60)

                                                    TCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGC                                           >  SRR4302537.1970323/1‑94 (MQ=60)

                                                    TCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGC                                           >  SRR4302537.451799/1‑94 (MQ=60)

                                                    TCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGGTGTCGATATCGACGC                                           >  SRR4302537.3306666/1‑94 (MQ=60)

                                                      TACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCC                                         <  SRR4302537.1183275/94‑1 (MQ=60)

                                                      TACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCC                                         <  SRR4302537.6091496/94‑1 (MQ=60)

                                                       ACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCA                                        <  SRR4302537.844678/94‑1 (MQ=60)

                                                       ACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCA                                        <  SRR4302537.4799812/94‑1 (MQ=60)

                                                        CTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGACTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAG                                       <  SRR4302537.1667155/94‑1 (MQ=60)

                                                         TGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGT                                      <  SRR4302537.6211130/94‑1 (MQ=60)

                                                            GCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTA                                   >  SRR4302537.1803120/1‑94 (MQ=60)

                                                            GCCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTA                                   >  SRR4302537.6404228/1‑94 (MQ=60)

                                                             CCAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTAC                                  <  SRR4302537.4569845/94‑1 (MQ=60)

                                                              CAGAACGCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACG                                 >  SRR4302537.5463666/1‑94 (MQ=60)

                                                                    GCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTA                           <  SRR4302537.5964188/94‑1 (MQ=60)

                                                                    GCGCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTA                           >  SRR4302537.1743015/1‑94 (MQ=60)

                                                                      GCCAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGA                         >  SRR4302537.3989570/1‑94 (MQ=60)

                                                                       CCAGGGCGTCAGAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGAT                        <  SRR4302537.2883632/94‑1 (MQ=60)

                                                                       CCAGGGCGTCACAGATTCCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGAT                        <  SRR4302537.2103247/94‑1 (MQ=60)

                                                                        CAGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATT                       >  SRR4302537.2923365/1‑94 (MQ=60)

                                                                         AGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTG                      >  SRR4302537.2297933/1‑94 (MQ=60)

                                                                         AGGGCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTG                      >  SRR4302537.2316764/1‑94 (MQ=60)

                                                                            GCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGT                   <  SRR4302537.2750934/94‑1 (MQ=60)

                                                                            GCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGT                   <  SRR4302537.1187929/94‑1 (MQ=60)

                                                                            GCGTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGT                   >  SRR4302537.6094219/1‑94 (MQ=60)

                                                                              GTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCC                 >  SRR4302537.3386671/1‑94 (MQ=60)

                                                                              GTCACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCC                 >  SRR4302537.5010331/1‑94 (MQ=60)

                                                                                CACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAG               <  SRR4302537.1012628/94‑1 (MQ=60)

                                                                                 ACAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGC              <  SRR4302537.6039198/94‑1 (MQ=60)

                                                                                 ACAGATTGCCAGCGCCTGGTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGC              <  SRR4302537.880078/94‑1 (MQ=60)

                                                                                  CAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCG             <  SRR4302537.3042986/94‑1 (MQ=60)

                                                                                  CAGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCG             <  SRR4302537.3962010/94‑1 (MQ=60)

                                                                                   AGATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGC            >  SRR4302537.3449277/1‑94 (MQ=60)

                                                                                    GATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCG           <  SRR4302537.6294418/94‑1 (MQ=60)

                                                                                     ATTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGT          >  SRR4302537.4324336/1‑94 (MQ=60)

                                                                                      TTTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTG         <  SRR4302537.406521/94‑1 (MQ=60)

                                                                                       TTCCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGT        <  SRR4302537.1892042/94‑1 (MQ=60)

                                                                                         CCAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTC      <  SRR4302537.2788301/94‑1 (MQ=60)

                                                                                          CAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCA     <  SRR4302537.4518680/94‑1 (MQ=60)

                                                                                          CAGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCA     <  SRR4302537.1496009/94‑1 (MQ=60)

                                                                                           AGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAG    >  SRR4302537.1910553/1‑94 (MQ=60)

                                                                                           AGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAG    >  SRR4302537.33687/1‑94 (MQ=60)

                                                                                           AGCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGAGTTCAG    <  SRR4302537.417235/94‑1 (MQ=60)

                                                                                            GCGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGC   >  SRR4302537.3835377/1‑94 (MQ=60)

                                                                                             CGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCA  >  SRR4302537.339612/1‑94 (MQ=60)

TTCGATTTCCGCTTTCGGCGTCAGTGCCGCCACGGAGTCAACGACGATAACGTCTACTGCGCCAGAACGCGCCAGGGCGTCACAGATTTCCAGTGCCTGCTCGCCGGTGTCCGGCTGGGAGCACAGCAGGTTGTCGATATCGACGCCCAGTTTACGTGCGTAGATTGGGTCCAGCGCGTGTTCAGCA  >  NC_000913/2821322‑2821508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`