Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,827,236	T→C	V56A (GTG→GCG)	srlR →	SrlR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,827,236	0	T	C	100.0%	889.2 / NA	257	V56A (GTG→GCG)	srlR	SrlR
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (117/140); total (117/140)

Only 100 of 274 total aligned reads displayed.

CGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGTGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCG  >  NC_000913/2827146‑2827325

 gcAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAgcggt                                                                                        <  1:802718/93‑1 (MQ=255)

 gcAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAgcggt                                                                                        >  1:1103386/1‑93 (MQ=255)

 gcAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAgcggt                                                                                        <  2:1539239/93‑1 (MQ=255)

 gcAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAgcggt                                                                                        >  2:2532130/1‑93 (MQ=255)

   aaTACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGgtgt                                                                                      <  2:47719/93‑1 (MQ=255)

   aaTACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGgtgt                                                                                      <  2:2279651/93‑1 (MQ=255)

   aaTACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGgtgt                                                                                      >  1:2961887/1‑93 (MQ=255)

     tACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGCGCGGTGTTg                                                                                    >  2:1007466/1‑93 (MQ=255)

     tACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTg                                                                                    >  1:3296941/1‑93 (MQ=255)

       cTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGaa                                                                                  >  1:4024500/1‑93 (MQ=255)

       cTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGaa                                                                                  <  1:3601711/93‑1 (MQ=255)

       cTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGaa                                                                                  >  1:3031835/1‑93 (MQ=255)

        tttGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAAt                                                                                 <  1:6355295/93‑1 (MQ=255)

         ttGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATa                                                                                <  1:4836488/93‑1 (MQ=255)

         ttGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATa                                                                                >  1:5772923/1‑93 (MQ=255)

           gACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATaaa                                                                              <  1:6380025/93‑1 (MQ=255)

            acacCACAGGCACAACCATTCGCAAGGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAag                                                                             >  2:3414581/1‑93 (MQ=255)

            acacCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAag                                                                             >  1:114216/1‑93 (MQ=255)

              accacAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAagag                                                                           >  2:5425594/1‑93 (MQ=255)

              accacAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAagag                                                                           >  1:1482956/1‑93 (MQ=255)

               ccacAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAgg                                                                          <  2:1078356/93‑1 (MQ=255)

                cacaGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGa                                                                         >  2:3195930/1‑93 (MQ=255)

                cacaGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGa                                                                         <  1:4153844/93‑1 (MQ=255)

                 acaGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGaa                                                                        <  1:6109306/93‑1 (MQ=255)

                  caGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAat                                                                       >  1:3113146/1‑93 (MQ=255)

                  caGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAat                                                                       <  2:6055868/93‑1 (MQ=255)

                  caGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAat                                                                       <  2:1227868/93‑1 (MQ=255)

                   aGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatc                                                                      >  2:130283/1‑93 (MQ=255)

                    ggCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatcc                                                                     <  2:3625961/93‑1 (MQ=255)

                     gCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccg                                                                    <  2:2626839/93‑1 (MQ=255)

                      cacaACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccga                                                                   <  2:3154074/93‑1 (MQ=255)

                       acaACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgat                                                                  <  2:3383893/93‑1 (MQ=255)

                       acaACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgat                                                                  <  2:1997193/93‑1 (MQ=255)

                       acaACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgat                                                                  >  1:977176/1‑93 (MQ=255)

                        caACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgatc                                                                 >  1:3988708/1‑93 (MQ=255)

                         aaCCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgatcc                                                                >  2:2942612/1‑93 (MQ=255)

                         aaCCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgatcc                                                                <  1:3702150/93‑1 (MQ=255)

                          aCCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAatccgatccg                                                               <  2:2059436/93‑1 (MQ=255)

                            cATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGcc                                                             <  2:5238113/93‑1 (MQ=255)

                             aTTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCt                                                            >  1:3623426/1‑93 (MQ=255)

                                cGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATc                                                         <  2:3988708/93‑1 (MQ=255)

                                  cAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGACGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGa                                                       <  1:3468887/93‑1 (MQ=255)

                                   aaaGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGAt                                                      <  2:243281/93‑1 (MQ=255)

                                      gATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCAt                                                   >  2:4093657/1‑93 (MQ=255)

                                       aTCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATa                                                  <  1:5297763/93‑1 (MQ=255)

                                        tCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATaa                                                 >  1:153487/1‑93 (MQ=255)

                                          tGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATaaaa                                               >  2:433901/1‑93 (MQ=255)

                                          tGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATaaaa                                               >  2:6147044/1‑93 (MQ=255)

                                           ggTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAac                                              >  2:2487495/1‑93 (MQ=255)

                                            gTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAaca                                             >  1:5002401/1‑93 (MQ=255)

                                            gTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAaca                                             >  2:712907/1‑93 (MQ=255)

                                             tCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAacac                                            <  1:5997994/93‑1 (MQ=255)

                                              cATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACt                                           <  2:566715/93‑1 (MQ=255)

                                              cATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACt                                           >  1:4057503/1‑93 (MQ=255)

                                                ttCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCTGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACtca                                         <  1:4688371/93‑1 (MQ=255)

                                                ttCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACtca                                         <  1:2091744/93‑1 (MQ=255)

                                                  cTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACtcatc                                       <  1:3380976/93‑1 (MQ=255)

                                                  cTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACtcatc                                       <  2:4912238/93‑1 (MQ=255)

                                                  cTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACtcatc                                       <  2:6003394/93‑1 (MQ=255)

                                                   tGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCCGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACtcatca                                      <  1:4450631/93‑1 (MQ=255)

                                                    ggAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCaa                                     <  1:121952/93‑1 (MQ=255)

                                                     gagcATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCGGATCCGCCTATCGATCATAAAACACTCATCAac                                    <  2:1746963/90‑1 (MQ=255)

                                                     gAACATGCCGGAACCGTCATTCGCACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCAGATCCGCCTATCGATCATAAAACACTCATCAac                                    >  1:3859672/1‑93 (MQ=255)

                                                      aaCATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAaca                                   <  1:4372233/93‑1 (MQ=255)

                                                      aaCATGCCGAAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAaca                                   <  1:572486/93‑1 (MQ=255)

                                                       aCATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAacac                                  <  1:5903552/93‑1 (MQ=255)

                                                        cATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACAcc                                 >  1:1381449/1‑93 (MQ=255)

                                                         aTGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACAccc                                >  2:1573736/1‑93 (MQ=255)

                                                         aTGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACAccc                                <  2:4486782/93‑1 (MQ=255)

                                                              ggAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACaag                           >  2:5496920/1‑93 (MQ=255)

                                                               gAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACaaga                          >  2:5333824/1‑93 (MQ=255)

                                                                aaCCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACaagaa                         >  1:4884232/1‑93 (MQ=255)

                                                                 aCCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACaagaaa                        >  2:5817929/1‑93 (MQ=255)

                                                                 aCCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACaagaaa                        <  1:665732/93‑1 (MQ=255)

                                                                  ccGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACaagaaag                       <  1:3763762/93‑1 (MQ=255)

                                                                     tCATTCGTACTTATGGCGGAGCGGAGTTGAATCAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGc                    >  1:2838583/1‑93 (MQ=255)

                                                                      cATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCt                   <  1:238997/93‑1 (MQ=255)

                                                                      cATTCGTACTTAGGGCGGAGCGGTGTAGAATAAAGACGAGTCCGATCGGCCTATCGATCATAAAACGCTCATCAACGCCCACAAGAAAGAGCt                   <  2:5530851/93‑1 (MQ=255)

                                                                       aTTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCGGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTg                  >  2:6276864/1‑93 (MQ=255)

                                                                       aTTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTg                  >  1:2685175/1‑93 (MQ=255)

                                                                       aTTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTg                  >  1:6263088/1‑93 (MQ=255)

                                                                         tCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGAt                <  1:2031049/93‑1 (MQ=255)

                                                                         tCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGAt                >  1:2462088/1‑93 (MQ=255)

                                                                         tCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGAt                >  2:5404144/1‑93 (MQ=255)

                                                                          cGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGAtt               <  1:4564340/93‑1 (MQ=255)

                                                                           gTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTg              >  2:91125/1‑93 (MQ=255)

                                                                           gTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTg              >  2:6468448/1‑93 (MQ=255)

                                                                             aCTTATGGCGGAGCGGCGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCa            >  2:5143075/1‑93 (MQ=255)

                                                                               ttATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGa          <  2:215620/93‑1 (MQ=255)

                                                                               ttATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGa          <  1:5413963/93‑1 (MQ=255)

                                                                                 aTGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAg        >  2:3480102/1‑93 (MQ=255)

                                                                                  tGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGc       <  2:1805272/93‑1 (MQ=255)

                                                                                  tGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGc       >  2:5080945/1‑93 (MQ=255)

                                                                                  tGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGc       <  1:1406246/93‑1 (MQ=255)

                                                                                  tGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGc       <  2:3045603/93‑1 (MQ=255)

                                                                                   ggCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCt      <  1:4196077/93‑1 (MQ=255)

                                                                                    gCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTg     <  1:1942337/93‑1 (MQ=255)

                                                                                      ggAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGcc   >  2:3717846/1‑93 (MQ=255)

                                                                                      ggAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGcc   >  2:786777/1‑93 (MQ=255)

                                                                                       gAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCg  >  1:5534268/1‑93 (MQ=255)

CGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGTGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCG  >  NC_000913/2827146‑2827325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGGCGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGTGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAG  >  NC_000913/2827143‑2827329

TGGCGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGC                                                                                               >  SRR4302537.5379213/1‑94 (MQ=60)

TGGCGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGC                                                                                               <  SRR4302537.1789764/94‑1 (MQ=60)

 GGCGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCG                                                                                              <  SRR4302537.3171437/94‑1 (MQ=60)

  GCGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGG                                                                                             <  SRR4302537.328250/94‑1 (MQ=60)

   CGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGT                                                                                            >  SRR4302537.1111006/1‑94 (MQ=60)

   CGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGT                                                                                            >  SRR4302537.4229793/1‑94 (MQ=60)

   CGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGT                                                                                            >  SRR4302537.4919058/1‑94 (MQ=60)

   CGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGT                                                                                            <  SRR4302537.5851806/94‑1 (MQ=60)

    GCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTG                                                                                           <  SRR4302537.808228/94‑1 (MQ=60)

     CAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGT                                                                                          <  SRR4302537.4077690/94‑1 (MQ=60)

     CAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGT                                                                                          >  SRR4302537.2982681/1‑94 (MQ=60)

     CAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGCAACCGTCATTCGTACTTATGGCGGAGCGGTGT                                                                                          <  SRR4302537.3751592/94‑1 (MQ=60)

       ATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTG                                                                                        >  SRR4302537.3320243/1‑94 (MQ=60)

       ATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTG                                                                                        >  SRR4302537.1533787/1‑94 (MQ=60)

       ATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGCTG                                                                                        >  SRR4302537.2502013/1‑94 (MQ=60)

         ACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAA                                                                                      >  SRR4302537.1356615/1‑94 (MQ=60)

         ACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAA                                                                                      >  SRR4302537.3052970/1‑94 (MQ=60)

         ACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAA                                                                                      >  SRR4302537.4052675/1‑94 (MQ=60)

          CTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAAT                                                                                     >  SRR4302537.888487/1‑94 (MQ=60)

          CTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAAT                                                                                     <  SRR4302537.3627097/94‑1 (MQ=60)

           TTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATA                                                                                    <  SRR4302537.6398676/94‑1 (MQ=60)

           TTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATA                                                                                    >  SRR4302537.5812489/1‑94 (MQ=60)

           CTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATA                                                                                    <  SRR4302537.1421877/94‑1 (MQ=60)

            TTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAA                                                                                   <  SRR4302537.2740221/94‑1 (MQ=60)

            TTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAA                                                                                   <  SRR4302537.4869883/94‑1 (MQ=60)

              GACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAG                                                                                 >  SRR4302537.149925/1‑94 (MQ=60)

              GACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAG                                                                                 <  SRR4302537.6423524/94‑1 (MQ=60)

              GACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAG                                                                                 <  SRR4302537.5479632/94‑1 (MQ=60)

              GACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAG                                                                                 >  SRR4302537.115050/1‑94 (MQ=60)

              GACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAG                                                                                 <  SRR4302537.3659710/94‑1 (MQ=60)

               ACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGA                                                                                >  SRR4302537.4024133/1‑94 (MQ=60)

                CACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAG                                                                               >  SRR4302537.1493269/1‑94 (MQ=60)

                CACCACAGCCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAG                                                                               >  SRR4302537.716514/1‑94 (MQ=60)

                  CCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGA                                                                             <  SRR4302537.5335573/94‑1 (MQ=60)

                   CACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAA                                                                            <  SRR4302537.3635754/94‑1 (MQ=60)

                   CACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAA                                                                            <  SRR4302537.4182849/94‑1 (MQ=60)

                   CACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAA                                                                            <  SRR4302537.3850200/94‑1 (MQ=60)

                    ACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAAT                                                                           >  SRR4302537.3134887/1‑94 (MQ=60)

                    ACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAAT                                                                           <  SRR4302537.920950/94‑1 (MQ=60)

                    ACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAAT                                                                           <  SRR4302537.4851894/94‑1 (MQ=60)

                    ACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAAT                                                                           <  SRR4302537.6151290/94‑1 (MQ=60)

                    ACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAAT                                                                           <  SRR4302537.5136634/94‑1 (MQ=60)

                     CAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATC                                                                          <  SRR4302537.2992959/94‑1 (MQ=60)

                      AGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCC                                                                         <  SRR4302537.6370304/94‑1 (MQ=60)

                      AGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCC                                                                         >  SRR4302537.6059920/1‑94 (MQ=60)

                       GGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCG                                                                        <  SRR4302537.1810447/94‑1 (MQ=60)

                         CACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGAT                                                                      <  SRR4302537.63764/94‑1 (MQ=60)

                         CACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGAT                                                                      <  SRR4302537.4198528/94‑1 (MQ=60)

                         CACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGAT                                                                      >  SRR4302537.983918/1‑94 (MQ=60)

                         CACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGAT                                                                      <  SRR4302537.4515412/94‑1 (MQ=60)

                         CACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGAT                                                                      >  SRR4302537.2079333/1‑94 (MQ=60)

                          ACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATC                                                                     <  SRR4302537.6179697/94‑1 (MQ=60)

                          ACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATC                                                                     >  SRR4302537.4016639/1‑94 (MQ=60)

                           CAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGTAGCGGGGTTGAATAAAGAGGAATCCGATCC                                                                    >  SRR4302537.2318496/1‑94 (MQ=60)

                           CAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCC                                                                    <  SRR4302537.2469806/94‑1 (MQ=60)

                            AACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAGCCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCG                                                                   <  SRR4302537.3088256/94‑1 (MQ=60)

                            AACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCTTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCG                                                                   <  SRR4302537.3728191/94‑1 (MQ=60)

                            AACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCG                                                                   >  SRR4302537.3894227/1‑94 (MQ=60)

                               CATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCT                                                                >  SRR4302537.3648964/1‑94 (MQ=60)

                               CATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCT                                                                >  SRR4302537.3648965/1‑94 (MQ=60)

                                ATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTA                                                               >  SRR4302537.4829226/1‑94 (MQ=60)

                                 TTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTAT                                                              >  SRR4302537.469139/1‑94 (MQ=60)

                                   CGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTCCTTATGGCGGAGCGGTGTTGAATGAAGAGGAATCCGATCAGCCTATCG                                                            >  SRR4302537.585211/1‑94 (MQ=60)

                                   CGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCG                                                            <  SRR4302537.34273/94‑1 (MQ=60)

                                   CGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCG                                                            <  SRR4302537.3580610/94‑1 (MQ=60)

                                   CGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCG                                                            <  SRR4302537.1438400/94‑1 (MQ=60)

                                   CGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCG                                                            <  SRR4302537.2972151/94‑1 (MQ=60)

                                     CAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGAT                                                          <  SRR4302537.1118837/94‑1 (MQ=60)

                                     CAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGACGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGAT                                                          <  SRR4302537.3493426/94‑1 (MQ=60)

                                      AAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATC                                                         <  SRR4302537.1403986/94‑1 (MQ=60)

                                      AAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATA                                                         >  SRR4302537.3382270/1‑94 (MQ=60)

                                       AAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCA                                                        >  SRR4302537.5674502/1‑94 (MQ=60)

                                         GATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATA                                                      >  SRR4302537.6174868/1‑94 (MQ=60)

                                         GATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATA                                                      >  SRR4302537.1900235/1‑94 (MQ=60)

                                          ATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAA                                                     <  SRR4302537.5334155/94‑1 (MQ=60)

                                          ATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAA                                                     <  SRR4302537.6513606/94‑1 (MQ=60)

                                          ATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAA                                                     >  SRR4302537.2876774/1‑94 (MQ=60)

                                          ATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAA                                                     >  SRR4302537.154580/1‑94 (MQ=60)

                                            CTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAA                                                   >  SRR4302537.2454683/1‑94 (MQ=60)

                                             TGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAAC                                                  <  SRR4302537.4276334/94‑1 (MQ=60)

                                              TGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACA                                                 <  SRR4302537.5142328/94‑1 (MQ=60)

                                              GGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACA                                                 >  SRR4302537.5036859/1‑94 (MQ=60)

                                               GTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACAC                                                <  SRR4302537.3240621/94‑1 (MQ=60)

                                                TCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACT                                               <  SRR4302537.6039199/94‑1 (MQ=60)

                                                TCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACT                                               >  SRR4302537.4085855/1‑94 (MQ=60)

                                                 CATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTC                                              >  SRR4302537.6398803/1‑94 (MQ=60)

                                                 CATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTA                                              >  SRR4302537.2039022/1‑94 (MQ=60)

                                                  ATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCA                                             >  SRR4302537.1196387/1‑94 (MQ=60)

                                                   TTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCTGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCAT                                            <  SRR4302537.4720804/94‑1 (MQ=60)

                                                   TTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCAT                                            <  SRR4302537.4114765/94‑1 (MQ=60)

                                                   TTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCAT                                            <  SRR4302537.5787740/94‑1 (MQ=60)

                                                   TTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCAT                                            <  SRR4302537.2106494/94‑1 (MQ=60)

                                                    TCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATACAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATC                                           >  SRR4302537.804001/1‑94 (MQ=60)

                                                     CTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCA                                          <  SRR4302537.3404930/94‑1 (MQ=60)

                                                      TGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCCGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAA                                         <  SRR4302537.4481372/94‑1 (MQ=60)

                                                       GGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAAC                                        <  SRR4302537.122828/94‑1 (MQ=60)

                                                       GGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCAACAAC                                        >  SRR4302537.6142013/1‑94 (MQ=60)

                                                       GGAACATGCCGGAACCGTCATTCGCACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCAGATCCGCCTATCGATCATAAAACACTCATCAAC                                        >  SRR4302537.3886691/1‑94 (MQ=60)

                                                         AACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACAC                                      >  SRR4302537.5949035/1‑94 (MQ=60)

                                                         AACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACAC                                      <  SRR4302537.4402439/94‑1 (MQ=60)

                                                         AACATGCCGAAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACAC                                      <  SRR4302537.576416/94‑1 (MQ=60)

                                                          ACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACC                                     <  SRR4302537.5944065/94‑1 (MQ=60)

                                                          ACATGCCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACC                                     >  SRR4302537.1391087/1‑94 (MQ=60)

                                                               CCGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCAGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAA                                >  SRR4302537.2000833/1‑94 (MQ=60)

                                                                CGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAG                               <  SRR4302537.378558/94‑1 (MQ=60)

                                                                CGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAG                               >  SRR4302537.5738983/1‑94 (MQ=60)

                                                                CGGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAG                               <  SRR4302537.3452090/94‑1 (MQ=60)

                                                                 GGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGA                              >  SRR4302537.4444793/1‑94 (MQ=60)

                                                                 GGAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGA                              >  SRR4302537.2350917/1‑94 (MQ=60)

                                                                  GAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAA                             >  SRR4302537.4917961/1‑94 (MQ=60)

                                                                  GAACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAA                             >  SRR4302537.580354/1‑94 (MQ=60)

                                                                   AACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAA                            <  SRR4302537.2091848/94‑1 (MQ=60)

                                                                    ACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAG                           <  SRR4302537.997685/94‑1 (MQ=60)

                                                                    ACCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAG                           <  SRR4302537.670271/94‑1 (MQ=60)

                                                                    ACCGTCATGCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAG                           <  SRR4302537.3289607/94‑1 (MQ=60)

                                                                     CCGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGA                          <  SRR4302537.3790192/94‑1 (MQ=60)

                                                                      CGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAG                         >  SRR4302537.4910418/1‑94 (MQ=60)

                                                                      CGTCATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAG                         <  SRR4302537.5370765/94‑1 (MQ=60)

                                                                       GTCATTCGTACTTATGGCGGAGCGGAGTTGAATCAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGC                        >  SRR4302537.2858445/1‑94 (MQ=60)

                                                                         CATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTG                      <  SRR4302537.240686/94‑1 (MQ=60)

                                                                         CATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTG                      >  SRR4302537.6306082/1‑94 (MQ=60)

                                                                         CATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTG                      <  SRR4302537.4037548/94‑1 (MQ=60)

                                                                         CATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTG                      >  SRR4302537.2703919/1‑94 (MQ=60)

                                                                          ATTCGTACTTATGGCGGAGCGGTGTTGAATTAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGA                     >  SRR4302537.4692300/1‑94 (MQ=60)

                                                                          ATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGA                     >  SRR4302537.3025952/1‑94 (MQ=60)

                                                                          ATTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGA                     >  SRR4302537.4119207/1‑94 (MQ=60)

                                                                           TTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGAT                    >  SRR4302537.2479403/1‑94 (MQ=60)

                                                                           TTCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGAT                    <  SRR4302537.1207252/94‑1 (MQ=60)

                                                                            TCGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATT                   <  SRR4302537.2045207/94‑1 (MQ=60)

                                                                             CGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTG                  <  SRR4302537.4595936/94‑1 (MQ=60)

                                                                             CGTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTG                  >  SRR4302537.1365560/1‑94 (MQ=60)

                                                                              GTACTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGC                 >  SRR4302537.3324946/1‑94 (MQ=60)

                                                                                 CTTATGGCGGAGCGGTGTTGAATAAAGGGGAATGCGATCCGCCTATCGATCATAAAACAGTCATCAGCACCCACAAGAAAGAGCTGATTGCAGA              >  SRR4302537.3440706/1‑94 (MQ=60)

                                                                                 CTTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGA              >  SRR4302537.6508630/1‑94 (MQ=60)

                                                                                  TTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAA             <  SRR4302537.5450875/94‑1 (MQ=60)

                                                                                  TTATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAA             <  SRR4302537.2730279/94‑1 (MQ=60)

                                                                                   TATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAG            >  SRR4302537.4211028/1‑94 (MQ=60)

                                                                                   TATGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAG            <  SRR4302537.4559695/94‑1 (MQ=60)

                                                                                     TGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCT          <  SRR4302537.1416037/94‑1 (MQ=60)

                                                                                     TGGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCT          <  SRR4302537.3955842/94‑1 (MQ=60)

                                                                                      GGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTG         <  SRR4302537.4225382/94‑1 (MQ=60)

                                                                                      GGCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTG         >  SRR4302537.3635168/1‑94 (MQ=60)

                                                                                       GCGGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGC        <  SRR4302537.1955839/94‑1 (MQ=60)

                                                                                         GGAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCG      >  SRR4302537.5572043/1‑94 (MQ=60)

                                                                                          GAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGT     <  SRR4302537.4931771/94‑1 (MQ=60)

                                                                                          GAGCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGT     >  SRR4302537.4088296/1‑94 (MQ=60)

                                                                                            GCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTA   <  SRR4302537.5091302/94‑1 (MQ=60)

                                                                                            GCGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTA   <  SRR4302537.2442335/94‑1 (MQ=60)

                                                                                             CGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAG  <  SRR4302537.5762056/94‑1 (MQ=60)

                                                                                             CGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAG  >  SRR4302537.3520930/1‑94 (MQ=60)

TGGCGCAATACTTTGACACCACAGGCACAACCATTCGCAAAGATCTGGTCATTCTGGAACATGCCGGAACCGTCATTCGTACTTATGGCGGAGTGGTGTTGAATAAAGAGGAATCCGATCCGCCTATCGATCATAAAACACTCATCAACACCCACAAGAAAGAGCTGATTGCAGAAGCTGCCGTTAG  >  NC_000913/2827143‑2827329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`