Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,865,844	A→G	G311G (GGT→GGC)	nlpD ←	lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,865,844	0	A	G	100.0%	890.2 / NA	254	G311G (GGT→GGC)	nlpD	lipoprotein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (130/124); total (130/124)

Only 100 of 257 total aligned reads displayed.

CTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAT  >  NC_000913/2865754‑2865933

cTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGcc                                                                                         <  2:1543187/93‑1 (MQ=255)

cTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGcc                                                                                         <  2:1856432/93‑1 (MQ=255)

 ttAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCg                                                                                        >  1:2685467/1‑93 (MQ=255)

  tAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGt                                                                                       <  1:441039/93‑1 (MQ=255)

  tAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGt                                                                                       >  2:4334780/1‑93 (MQ=255)

  tAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGt                                                                                       <  1:2764253/93‑1 (MQ=255)

   aaCTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTa                                                                                      >  2:2013536/1‑93 (MQ=255)

     cttcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGc                                                                                    <  2:1838200/93‑1 (MQ=255)

     cttcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGc                                                                                    >  2:5175583/1‑93 (MQ=255)

      ttcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGcc                                                                                   >  1:5225049/1‑93 (MQ=255)

       tcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCcg                                                                                  <  2:987572/93‑1 (MQ=255)

       tcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCcg                                                                                  <  2:3973869/93‑1 (MQ=255)

       tcttGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCcg                                                                                  >  2:4399162/1‑93 (MQ=255)

         ttgttgTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCcgcg                                                                                >  1:1057369/1‑93 (MQ=255)

         ttgttgTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCcgcg                                                                                <  1:2264697/93‑1 (MQ=255)

          tgttgtTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCgcgc                                                                               <  2:2984821/93‑1 (MQ=255)

          tgttgtTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCgcgc                                                                               <  2:1475199/93‑1 (MQ=255)

           gttgttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCa                                                                              >  2:4583878/1‑93 (MQ=255)

               ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAgcgc                                                                          <  2:6316328/93‑1 (MQ=255)

               ttCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAgcgc                                                                          >  2:4100810/1‑93 (MQ=255)

                 cccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGt                                                                        <  1:4518810/93‑1 (MQ=255)

                  ccGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGtt                                                                       <  2:3281349/93‑1 (MQ=255)

                     gACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTTcc                                                                    <  2:1660379/93‑1 (MQ=255)

                     gACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTAcc                                                                    >  2:1823718/1‑93 (MQ=255)

                     gACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTAcc                                                                    >  1:5572619/1‑93 (MQ=255)

                     gACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTAcc                                                                    >  2:5679437/1‑93 (MQ=255)

                      aCCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCa                                                                   >  2:1261907/1‑93 (MQ=255)

                      aCCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCa                                                                   >  2:343907/1‑93 (MQ=255)

                      aCCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCa                                                                   >  2:81893/1‑93 (MQ=255)

                       ccAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAg                                                                  <  1:4877635/93‑1 (MQ=255)

                        cAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGc                                                                 <  1:5474808/93‑1 (MQ=255)

                        cAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGc                                                                 <  2:4692096/93‑1 (MQ=255)

                         aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCa                                                                >  1:3580285/1‑93 (MQ=255)

                         aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCa                                                                >  1:1869479/1‑93 (MQ=255)

                         aGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCa                                                                >  1:1963106/1‑93 (MQ=255)

                             ttGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATaaa                                                            >  1:3334228/1‑93 (MQ=255)

                             ttGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATaaa                                                            <  1:2319492/93‑1 (MQ=255)

                              tgtgTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAaac                                                           <  1:1744835/93‑1 (MQ=255)

                              tgtgTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAaac                                                           <  1:3515047/93‑1 (MQ=255)

                               gtgtCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAaaca                                                          >  1:4831284/1‑93 (MQ=255)

                                  tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcg                                                       >  2:1193363/1‑93 (MQ=255)

                                  tCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcg                                                       >  1:1800275/1‑93 (MQ=255)

                                    gTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcgcg                                                     >  1:368603/1‑93 (MQ=255)

                                    gTTATGGCCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAcgcg                                                     <  2:2263635/93‑1 (MQ=255)

                                     ttATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                                                    >  2:2550719/1‑93 (MQ=255)

                                     ttATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCgg                                                    >  2:2204074/1‑93 (MQ=255)

                                       aTGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGcc                                                  >  1:5926211/1‑93 (MQ=255)

                                       aTGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGcc                                                  <  2:1356941/93‑1 (MQ=255)

                                         gggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCAt                                                <  2:6156007/93‑1 (MQ=255)

                                         gggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCAt                                                >  1:5755292/1‑93 (MQ=255)

                                          ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATc                                               >  1:4091870/1‑93 (MQ=255)

                                          ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATc                                               <  2:388026/93‑1 (MQ=255)

                                          ggCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATc                                               <  2:4923323/93‑1 (MQ=255)

                                             gTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGc                                            <  1:5330900/93‑1 (MQ=255)

                                                   aCTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTcgc                                      <  1:1441484/93‑1 (MQ=255)

                                                    cTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTcgcg                                     >  1:499873/1‑93 (MQ=255)

                                                     tCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGa                                    >  1:407282/1‑93 (MQ=255)

                                                     tCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGa                                    <  1:2045417/93‑1 (MQ=255)

                                                       aGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATa                                  <  1:906682/93‑1 (MQ=255)

                                                       aGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATa                                  >  1:2501142/1‑93 (MQ=255)

                                                        ggTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATaa                                 >  1:1177947/1‑93 (MQ=255)

                                                        ggTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATaa                                 >  1:3890340/1‑93 (MQ=255)

                                                         gTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAAt                                <  1:6133265/93‑1 (MQ=255)

                                                          tAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAAtt                               >  1:6231270/1‑93 (MQ=255)

                                                          tAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAAtt                               <  2:5605977/93‑1 (MQ=255)

                                                           aaTCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTg                              >  2:739799/1‑93 (MQ=255)

                                                            atcatcATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAGTTGc                             <  2:3128360/93‑1 (MQ=255)

                                                            atcatcATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGc                             <  1:338093/93‑1 (MQ=255)

                                                            atcatcATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGc                             <  2:3661832/93‑1 (MQ=255)

                                                             tcatcaTTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGcc                            <  2:1079216/93‑1 (MQ=255)

                                                              catcatTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCt                           <  2:4159834/93‑1 (MQ=255)

                                                               atcatTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTg                          >  1:3845222/1‑93 (MQ=255)

                                                               atcatTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTg                          <  2:4749535/93‑1 (MQ=255)

                                                               agcatTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTg                          <  1:1335215/91‑1 (MQ=255)

                                                                tcatTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGt                         >  1:2608758/1‑93 (MQ=255)

                                                                tcatTATGTTTGATGATAATCAGATTGCAGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGt                         >  1:5379999/1‑93 (MQ=255)

                                                                 catTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTc                        <  2:5471978/93‑1 (MQ=255)

                                                                  atTATGTTTGATGATCATCAGATTGCCGTAGCCGGGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTcc                       <  1:2858721/93‑1 (MQ=255)

                                                                   ttATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCt                      >  2:5032042/1‑93 (MQ=255)

                                                                   ttATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCt                      <  1:2994653/93‑1 (MQ=255)

                                                                    tATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCtt                     <  2:3599027/93‑1 (MQ=255)

                                                                    tATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCtt                     <  2:2327930/93‑1 (MQ=255)

                                                                    tATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCtt                     <  1:2831768/93‑1 (MQ=255)

                                                                      tGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtg                   >  2:1445774/1‑93 (MQ=255)

                                                                      tGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtg                   >  1:834128/1‑93 (MQ=255)

                                                                       gTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgc                  <  1:71025/93‑1 (MQ=255)

                                                                       gTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgc                  <  2:2948665/93‑1 (MQ=255)

                                                                        tttGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgct                 >  2:5910416/1‑93 (MQ=255)

                                                                        tttGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgct                 >  2:6014259/1‑93 (MQ=255)

                                                                        tttGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgct                 >  1:6066159/1‑93 (MQ=255)

                                                                         ttGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTtgctg                >  1:4683657/1‑93 (MQ=255)

                                                                             tgatAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGctgcctg            >  1:5706915/1‑93 (MQ=255)

                                                                              gatAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCTATAATTGCCTGTCCTTTGctgcctgc           <  2:5356369/93‑1 (MQ=255)

                                                                                tAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGa         >  1:2509317/1‑93 (MQ=255)

                                                                                  aTCAGATTGCCGTAGCCGCACAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGata       >  2:6325153/1‑93 (MQ=255)

                                                                                   tCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGTTCGCGATAATTGCCTGTCCTTTGCTGGCTGCGatat      >  1:6115281/1‑93 (MQ=255)

                                                                                   tCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGatat      >  2:1750663/1‑93 (MQ=255)

                                                                                      gATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCaa   >  1:3068078/1‑93 (MQ=255)

                                                                                      gATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCaa   <  2:2615633/93‑1 (MQ=255)

                                                                                       aTTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAt  >  1:5038307/1‑93 (MQ=255)

CTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAT  >  NC_000913/2865754‑2865933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCC  >  NC_000913/2865751‑2865937

CGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTG                                                                                               <  SRR4302537.30546/94‑1 (MQ=60)

CGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTG                                                                                               >  SRR4302537.487431/1‑94 (MQ=60)

 GCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGC                                                                                              >  SRR4302537.5439447/1‑94 (MQ=60)

 GCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGC                                                                                              <  SRR4302537.1243567/94‑1 (MQ=60)

 GCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGC                                                                                              >  SRR4302537.4571268/1‑94 (MQ=60)

 GCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGCGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGC                                                                                              >  SRR4302537.6358692/1‑94 (MQ=60)

  CCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCC                                                                                             >  SRR4302537.3443104/1‑94 (MQ=60)

  CCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCC                                                                                             <  SRR4302537.439580/94‑1 (MQ=60)

   CTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCG                                                                                            >  SRR4302537.2704211/1‑94 (MQ=60)

   CTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCG                                                                                            >  SRR4302537.679216/1‑94 (MQ=60)

   CTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTAAGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCG                                                                                            >  SRR4302537.3919065/1‑94 (MQ=60)

   CTNAACNTCTTGTTGTTCCCGGNNCAGCATTGTGTCGTTATGGGCNTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCG                                                                                            <  SRR4302537.5198062/94‑1 (MQ=60)

     TAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTA                                                                                          <  SRR4302537.444100/94‑1 (MQ=60)

     TAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTA                                                                                          <  SRR4302537.2783560/94‑1 (MQ=60)

     TAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTA                                                                                          <  SRR4302537.5668448/94‑1 (MQ=60)

     TAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTA                                                                                          <  SRR4302537.1849546/94‑1 (MQ=60)

     TAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTA                                                                                          <  SRR4302537.3254595/94‑1 (MQ=60)

      AACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAG                                                                                         >  SRR4302537.5316287/1‑94 (MQ=60)

       ACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGC                                                                                        >  SRR4302537.284479/1‑94 (MQ=60)

        CTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCC                                                                                       >  SRR4302537.5260981/1‑94 (MQ=60)

           CTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCG                                                                                    >  SRR4302537.4805289/1‑94 (MQ=60)

           CTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCG                                                                                    >  SRR4302537.1064662/1‑94 (MQ=60)

            TTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGC                                                                                   >  SRR4302537.6232592/1‑94 (MQ=60)

            TTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGC                                                                                   <  SRR4302537.2280685/94‑1 (MQ=60)

            TTGTTGTTCCCGGACAAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGC                                                                                   >  SRR4302537.2698216/1‑94 (MQ=60)

             TGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCA                                                                                  <  SRR4302537.2521733/94‑1 (MQ=60)

                TGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCG                                                                               <  SRR4302537.957246/94‑1 (MQ=60)

                TGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCG                                                                               <  SRR4302537.1335906/94‑1 (MQ=60)

                 GTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGG                                                                              >  SRR4302537.787819/1‑94 (MQ=60)

                    CCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTT                                                                           <  SRR4302537.4550067/94‑1 (MQ=60)

                    CCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTT                                                                           >  SRR4302537.5863956/1‑94 (MQ=60)

                    CCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTT                                                                           >  SRR4302537.1549898/1‑94 (MQ=60)

                     CCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTA                                                                          <  SRR4302537.2787484/94‑1 (MQ=60)

                       GGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACC                                                                        >  SRR4302537.5468816/1‑94 (MQ=60)

                       GGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACC                                                                        >  SRR4302537.5610710/1‑94 (MQ=60)

                         ACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAG                                                                      <  SRR4302537.3898810/94‑1 (MQ=60)

                          CCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGC                                                                     <  SRR4302537.4911332/94‑1 (MQ=60)

                           CAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCA                                                                    >  SRR4302537.3605525/1‑94 (MQ=60)

                           CAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCA                                                                    <  SRR4302537.5512172/94‑1 (MQ=60)

                           CAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCA                                                                    >  SRR4302537.1976755/1‑94 (MQ=60)

                           CAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCA                                                                    >  SRR4302537.1882493/1‑94 (MQ=60)

                             GCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATA                                                                  >  SRR4302537.2024297/1‑94 (MQ=60)

                              CATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAA                                                                 >  SRR4302537.2081424/1‑94 (MQ=60)

                               ATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAA                                                                >  SRR4302537.3357818/1‑94 (MQ=60)

                                TTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAAC                                                               <  SRR4302537.5788669/94‑1 (MQ=60)

                                TTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAAC                                                               <  SRR4302537.5439536/94‑1 (MQ=60)

                                TTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAAC                                                               <  SRR4302537.2335870/94‑1 (MQ=60)

                                 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACA                                                              >  SRR4302537.4864649/1‑94 (MQ=60)

                                 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACA                                                              >  SRR4302537.868834/1‑94 (MQ=60)

                                 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACA                                                              <  SRR4302537.6154130/94‑1 (MQ=60)

                                 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACA                                                              <  SRR4302537.5199305/94‑1 (MQ=60)

                                 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACA                                                              <  SRR4302537.3539915/94‑1 (MQ=60)

                                 TGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACA                                                              <  SRR4302537.1756999/94‑1 (MQ=60)

                                   TGTCGTTATGGGTGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAC                                                            <  SRR4302537.5514806/94‑1 (MQ=60)

                                    GTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACG                                                           <  SRR4302537.5646768/94‑1 (MQ=60)

                                    GTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACG                                                           <  SRR4302537.4562155/94‑1 (MQ=60)

                                    GTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACG                                                           >  SRR4302537.1812837/1‑94 (MQ=60)

                                      CGTTATGGGCGTAGGCACTCAGTTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCG                                                         <  SRR4302537.1866384/94‑1 (MQ=60)

                                      CGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCG                                                         >  SRR4302537.371161/1‑94 (MQ=60)

                                         TATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCC                                                      >  SRR4302537.5966881/1‑94 (MQ=60)

                                         TATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCC                                                      <  SRR4302537.6174235/94‑1 (MQ=60)

                                           TGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCAT                                                    >  SRR4302537.5794709/1‑94 (MQ=60)

                                            GGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATC                                                   >  SRR4302537.4120447/1‑94 (MQ=60)

                                            GGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATC                                                   <  SRR4302537.6487514/94‑1 (MQ=60)

                                               CGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGC                                                >  SRR4302537.4534726/1‑94 (MQ=60)

                                                GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCG                                               <  SRR4302537.5367467/94‑1 (MQ=60)

                                                GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCG                                               <  SRR4302537.2880712/94‑1 (MQ=60)

                                                GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCG                                               <  SRR4302537.3541848/94‑1 (MQ=60)

                                                GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCG                                               >  SRR4302537.5974244/1‑94 (MQ=60)

                                                GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCG                                               <  SRR4302537.4900082/94‑1 (MQ=60)

                                                GTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCG                                               <  SRR4302537.850373/94‑1 (MQ=60)

                                                 TAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGG                                              >  SRR4302537.2268447/1‑94 (MQ=60)

                                                    GCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCG                                           >  SRR4302537.949144/1‑94 (MQ=60)

                                                      ACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCG                                         >  SRR4302537.1381030/1‑94 (MQ=60)

                                                      ACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCG                                         >  SRR4302537.30637/1‑94 (MQ=60)

                                                      ACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCG                                         >  SRR4302537.503310/1‑94 (MQ=60)

                                                      ACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCG                                         <  SRR4302537.1451531/94‑1 (MQ=60)

                                                       CTCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGA                                        >  SRR4302537.410105/1‑94 (MQ=60)

                                                        TCAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGAT                                       <  SRR4302537.2059750/94‑1 (MQ=60)

                                                         CAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATA                                      >  SRR4302537.2518738/1‑94 (MQ=60)

                                                         CAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATA                                      >  SRR4302537.5818487/1‑94 (MQ=60)

                                                         CAGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATA                                      >  SRR4302537.1561594/1‑94 (MQ=60)

                                                          AGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAA                                     <  SRR4302537.912946/94‑1 (MQ=60)

                                                          AGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAA                                     >  SRR4302537.3917547/1‑94 (MQ=60)

                                                          AGGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAA                                     >  SRR4302537.1186137/1‑94 (MQ=60)

                                                           GGTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAAT                                    >  SRR4302537.1894134/1‑94 (MQ=60)

                                                            GTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATT                                   <  SRR4302537.6175426/94‑1 (MQ=60)

                                                            GTAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATT                                   >  SRR4302537.6274133/1‑94 (MQ=60)

                                                             TAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTG                                  <  SRR4302537.5407215/94‑1 (MQ=60)

                                                             TAATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTG                                  <  SRR4302537.4084821/94‑1 (MQ=60)

                                                              AATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGC                                 >  SRR4302537.5998339/1‑94 (MQ=60)

                                                              AATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGC                                 >  SRR4302537.285634/1‑94 (MQ=60)

                                                              AATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGC                                 <  SRR4302537.3382651/94‑1 (MQ=60)

                                                              AATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAAAGCGGCCATCTGCGGTCGCGATAATTGC                                 >  SRR4302537.3550880/1‑94 (MQ=60)

                                                               ATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCC                                <  SRR4302537.2535377/94‑1 (MQ=60)

                                                               ATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCC                                <  SRR4302537.340438/94‑1 (MQ=60)

                                                               ATCATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCC                                <  SRR4302537.3096371/94‑1 (MQ=60)

                                                                 CATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTG                              >  SRR4302537.3872145/1‑94 (MQ=60)

                                                                 CATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTG                              >  SRR4302537.2313664/1‑94 (MQ=60)

                                                                  ATCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGT                             >  SRR4302537.2627003/1‑94 (MQ=60)

                                                                  ATCATTATGTTTGATGATAATCAGATTGCAGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGT                             >  SRR4302537.5416791/1‑94 (MQ=60)

                                                                  AGCATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGT                             <  SRR4302537.1344517/94‑1 (MQ=60)

                                                                    CATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCC                           <  SRR4302537.1786657/94‑1 (MQ=60)

                                                                     ATTATGTTTGATGATCATCAGATTGCCGTAGCCGGGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCT                          <  SRR4302537.2878766/94‑1 (MQ=60)

                                                                     ATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCT                          >  SRR4302537.6169153/1‑94 (MQ=60)

                                                                     ATTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCT                          >  SRR4302537.2772501/1‑94 (MQ=60)

                                                                      TTATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTT                         <  SRR4302537.3015542/94‑1 (MQ=60)

                                                                       TATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTT                        <  SRR4302537.2851553/94‑1 (MQ=60)

                                                                        ATGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTG                       >  SRR4302537.839836/1‑94 (MQ=60)

                                                                         TGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGGATACACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGC                      >  SRR4302537.4219146/1‑94 (MQ=60)

                                                                         TGTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGC                      >  SRR4302537.1180548/1‑94 (MQ=60)

                                                                          GTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCT                     >  SRR4302537.2990777/1‑94 (MQ=60)

                                                                          GTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCT                     <  SRR4302537.71544/94‑1 (MQ=60)

                                                                          GTTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCT                     >  SRR4302537.6107830/1‑94 (MQ=60)

                                                                           TTTGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTG                    >  SRR4302537.4716054/1‑94 (MQ=60)

                                                                             TGATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCC                  <  SRR4302537.410293/94‑1 (MQ=60)

                                                                               ATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTG                >  SRR4302537.2374097/1‑94 (MQ=60)

                                                                               ATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTG                >  SRR4302537.5745968/1‑94 (MQ=60)

                                                                               ATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTG                >  SRR4302537.2530845/1‑94 (MQ=60)

                                                                               ATGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTG                <  SRR4302537.450314/94‑1 (MQ=60)

                                                                                TGATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGC               <  SRR4302537.3718831/94‑1 (MQ=60)

                                                                                 GATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCG              <  SRR4302537.5337675/94‑1 (MQ=60)

                                                                                  ATAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGA             >  SRR4302537.2526970/1‑94 (MQ=60)

                                                                                   TAATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGAT            <  SRR4302537.4991050/94‑1 (MQ=60)

                                                                                    AATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATA           >  SRR4302537.2382861/1‑94 (MQ=60)

                                                                                    AATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATA           <  SRR4302537.2766037/94‑1 (MQ=60)

                                                                                    AATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATA           >  SRR4302537.2013853/1‑94 (MQ=60)

                                                                                     ATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGTTCGCGATAATTGCCTGTCCTTTGCTGGCTGCGATAT          >  SRR4302537.6157302/1‑94 (MQ=60)

                                                                                     ATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATAT          >  SRR4302537.3671326/1‑94 (MQ=60)

                                                                                     ATCAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATAT          <  SRR4302537.5036428/94‑1 (MQ=60)

                                                                                       CAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCA        <  SRR4302537.1312069/94‑1 (MQ=60)

                                                                                       CAGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCA        <  SRR4302537.3814985/94‑1 (MQ=60)

                                                                                        AGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAA       >  SRR4302537.3089454/1‑94 (MQ=60)

                                                                                        AGATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCAATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAA       <  SRR4302537.3526786/94‑1 (MQ=60)

                                                                                         GATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAT      <  SRR4302537.498885/94‑1 (MQ=60)

                                                                                         GATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAT      >  SRR4302537.5072991/1‑94 (MQ=60)

                                                                                         GATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAAT      <  SRR4302537.4287694/94‑1 (MQ=60)

                                                                                          ATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATC     >  SRR4302537.6228685/1‑94 (MQ=60)

                                                                                          ATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATC     <  SRR4302537.4854575/94‑1 (MQ=60)

                                                                                          ATTGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATC     >  SRR4302537.3224084/1‑94 (MQ=60)

                                                                                            TGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCC   >  SRR4302537.3728165/1‑94 (MQ=60)

                                                                                            TGCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCC   <  SRR4302537.1405099/94‑1 (MQ=60)

                                                                                             GCCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCC  >  SRR4302537.6411527/1‑94 (MQ=60)

CGCCTTAACTTCTTGTTGTTCCCGGACCAGCATTGTGTCGTTATGGGCGTAGGCACTCAGGTAATCATCATTATGTTTGATGATAATCAGATTACCGTAGCCGCGCAGCGCGTTACCAGCATAAACAACGCGGCCATCTGCGGTCGCGATAATTGCCTGTCCTTTGCTGCCTGCGATATCAATCCCC  >  NC_000913/2865751‑2865937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`