Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,906,235	C→T	G485D (GGT→GAT)	pyrG ←	CTP synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,906,235	0	C	T	100.0%	1023.1 / NA	286	G485D (GGT→GAT)	pyrG	CTP synthetase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (112/174); total (112/174)

Only 100 of 288 total aligned reads displayed.

GGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGG  >  NC_000913/2906146‑2906324

   aCTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCAt                                                                                     >  2:734182/1‑93 (MQ=255)

     tGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCt                                                                                   <  1:1520529/93‑1 (MQ=255)

      ggCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCtt                                                                                  >  2:3750951/1‑93 (MQ=255)

        cAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCa                                                                                >  2:1752284/1‑93 (MQ=255)

           gCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATc                                                                             >  2:5135000/1‑93 (MQ=255)

           gCCACGAACCACGGGTGATTCAGAACTTCGATGATCTCGACCAACTGATCATCCCAGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATc                                                                             <  1:2949330/93‑1 (MQ=255)

            ccACGAACCACTGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCt                                                                            <  2:1824539/93‑1 (MQ=255)

            ccACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCt                                                                            >  1:205299/1‑93 (MQ=255)

             cACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTg                                                                           <  1:6026033/93‑1 (MQ=255)

             cACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTg                                                                           <  1:4972040/93‑1 (MQ=255)

              aCGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGt                                                                          >  1:3024985/1‑93 (MQ=255)

               cGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGtt                                                                         <  1:747214/93‑1 (MQ=255)

               cGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGtt                                                                         >  1:1350614/1‑93 (MQ=255)

               cGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGtt                                                                         <  1:832028/93‑1 (MQ=255)

                 aaCCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTc                                                                       <  2:5742768/93‑1 (MQ=255)

                 aaCCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTc                                                                       <  2:2237211/93‑1 (MQ=255)

                  aCCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCa                                                                      >  1:3794076/1‑93 (MQ=255)

                  aCCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCa                                                                      <  1:5636466/93‑1 (MQ=255)

                   ccACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCaa                                                                     <  1:1184815/93‑1 (MQ=255)

                   ccACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCaa                                                                     >  2:4131009/1‑93 (MQ=255)

                    cACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAAc                                                                    <  2:3174010/93‑1 (MQ=255)

                    cACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAAc                                                                    <  1:3074379/93‑1 (MQ=255)

                    cACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAAc                                                                    <  1:1291887/93‑1 (MQ=255)

                     ccGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACa                                                                   <  1:1633719/92‑1 (MQ=255)

                     aCGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACa                                                                   <  1:5767247/93‑1 (MQ=255)

                     aCGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACa                                                                   <  2:5695937/93‑1 (MQ=255)

                       gggTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGc                                                                 <  2:1090908/93‑1 (MQ=255)

                        ggTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCa                                                                <  2:319279/93‑1 (MQ=255)

                         gTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCag                                                               >  1:6202322/1‑92 (MQ=255)

                         gTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCAt                                                               <  2:3619794/93‑1 (MQ=255)

                            aTTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCAtgtt                                                            <  1:42137/93‑1 (MQ=255)

                               cGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATgttgtt                                                         <  2:3813084/93‑1 (MQ=255)

                                ggAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGttgttg                                                        <  1:5148758/93‑1 (MQ=255)

                                 gAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGa                                                       >  2:2660817/1‑93 (MQ=255)

                                 gAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGa                                                       <  2:928992/93‑1 (MQ=255)

                                 gAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGa                                                       <  1:4646123/93‑1 (MQ=255)

                                  aaCTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGAc                                                      <  1:3494705/93‑1 (MQ=255)

                                    cTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACtt                                                    <  2:3517255/93‑1 (MQ=255)

                                    cTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACtt                                                    <  1:4725386/93‑1 (MQ=255)

                                        gatgatCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTa                                                >  2:5201153/1‑93 (MQ=255)

                                        gatgatCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTa                                                >  2:4208160/1‑93 (MQ=255)

                                        gatgatCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTa                                                <  1:5936987/93‑1 (MQ=255)

                                          tgatCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAAc                                              <  2:5288647/93‑1 (MQ=255)

                                           gatCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACg                                             <  2:1704488/93‑1 (MQ=255)

                                            atCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACgg                                            <  2:1218703/93‑1 (MQ=255)

                                             tctcGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGt                                           <  2:5954919/93‑1 (MQ=255)

                                              ctcGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTg                                          <  1:3436539/93‑1 (MQ=255)

                                                cGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGAc                                        <  1:4878920/93‑1 (MQ=255)

                                                 gACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACg                                       >  1:3309503/1‑93 (MQ=255)

                                                  aCCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGa                                      <  1:3159511/93‑1 (MQ=255)

                                                  aCCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGa                                      <  2:4622458/93‑1 (MQ=255)

                                                  aCCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGa                                      <  2:5023273/93‑1 (MQ=255)

                                                  aCCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGa                                      <  1:3590825/93‑1 (MQ=255)

                                                   ccAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGAt                                     <  1:1832132/93‑1 (MQ=255)

                                                   ccAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGAt                                     >  2:4818469/1‑93 (MQ=255)

                                                    cAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATg                                    >  1:3892088/1‑93 (MQ=255)

                                                     aaCTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGa                                   <  1:5042023/93‑1 (MQ=255)

                                                      aCTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGAc                                  <  2:3219484/93‑1 (MQ=255)

                                                      aCTGATCAGCGCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACATCGTAACGGTAACGATGAc                                  <  2:6282220/93‑1 (MQ=255)

                                                        tGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGc                                <  2:2552799/93‑1 (MQ=255)

                                                        tGATCAGCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAGCAGCATGTTGTTGACTTCGTAACGGTGACGATGACGc                                <  2:2819327/93‑1 (MQ=255)

                                                         gATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCt                               >  2:845407/1‑93 (MQ=255)

                                                         gATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCt                               >  2:38765/1‑93 (MQ=255)

                                                          atcatcCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTc                              >  2:2025480/1‑93 (MQ=255)

                                                          atcatcCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTc                              >  1:2542964/1‑93 (MQ=255)

                                                             atcCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTcaac                           <  1:4227780/93‑1 (MQ=255)

                                                              tcCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTcaaca                          >  1:4136637/1‑93 (MQ=255)

                                                              tcCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTcaaca                          >  1:4102961/1‑93 (MQ=255)

                                                              tcCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTcaaca                          >  1:584643/1‑93 (MQ=255)

                                                                cccGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTcaacact                        <  2:4073030/93‑3 (MQ=255)

                                                                 ccGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGGCGCTCAACAAtt                       >  2:2364040/1‑93 (MQ=255)

                                                                 ccGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAAtt                       <  2:4553553/93‑1 (MQ=255)

                                                                  cGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTg                      >  2:1738531/1‑93 (MQ=255)

                                                                   ggAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGt                     >  2:1208582/1‑93 (MQ=255)

                                                                    gAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTc                    >  2:4889532/1‑93 (MQ=255)

                                                                     aaCGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCg                   <  2:1452135/93‑1 (MQ=255)

                                                                     aaCGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCg                   <  1:4505766/93‑1 (MQ=255)

                                                                      aCGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCgg                  <  2:5476833/93‑1 (MQ=255)

                                                                         gCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGgcgc               >  1:6411208/1‑93 (MQ=255)

                                                                         gCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGgcgc               >  1:4441860/1‑93 (MQ=255)

                                                                           ccGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCAt             <  1:2271336/93‑1 (MQ=255)

                                                                            cGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCAtt            <  1:2633096/93‑1 (MQ=255)

                                                                            cGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCAtt            >  2:2050749/1‑93 (MQ=255)

                                                                             gCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTg           >  2:3555617/1‑93 (MQ=255)

                                                                             gCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTg           >  2:3030951/1‑93 (MQ=255)

                                                                              cAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGt          >  1:5224053/1‑93 (MQ=255)

                                                                              cAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGt          <  2:4285756/93‑1 (MQ=255)

                                                                               aaCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTa         <  2:4430793/93‑1 (MQ=255)

                                                                               aaCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTa         <  1:2775229/93‑1 (MQ=255)

                                                                               aaCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTa         <  1:1713249/93‑1 (MQ=255)

                                                                                aCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAc        >  2:3977916/1‑93 (MQ=255)

                                                                                aCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAc        <  2:1656165/93‑1 (MQ=255)

                                                                                aCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAc        >  1:5509939/1‑93 (MQ=255)

                                                                                aCGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAc        <  2:626134/93‑1 (MQ=255)

                                                                                 cgcgCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACa       <  1:2833040/93‑1 (MQ=255)

                                                                                   cgcAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGc     <  2:6444672/93‑1 (MQ=255)

                                                                                   cgcAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGc     <  1:5328698/93‑1 (MQ=255)

                                                                                    gcAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCt    >  2:5389560/1‑93 (MQ=255)

                                                                                    gcAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCt    <  1:1008075/93‑1 (MQ=255)

                                                                                      aGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTgg  <  1:5486439/93‑1 (MQ=255)

GGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGG  >  NC_000913/2906146‑2906324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAA  >  NC_000913/2906142‑2906328

GGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGAT                                                                                               <  SRR4302537.2903824/94‑1 (MQ=60)

 GATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATC                                                                                              <  SRR4302537.2125496/94‑1 (MQ=60)

 GATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATC                                                                                              <  SRR4302537.6290020/94‑1 (MQ=60)

  ATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCT                                                                                             <  SRR4302537.728335/94‑1 (MQ=60)

  ATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCT                                                                                             <  SRR4302537.6160033/94‑1 (MQ=60)

  ATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCT                                                                                             <  SRR4302537.3304979/94‑1 (MQ=60)

  ATGGAACGGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCT                                                                                             <  SRR4302537.1249834/94‑1 (MQ=60)

   TGAAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTG                                                                                            <  SRR4302537.422780/94‑1 (MQ=60)

     GAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCA                                                                                          >  SRR4302537.4252471/1‑94 (MQ=60)

     GAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCA                                                                                          >  SRR4302537.3467862/1‑94 (MQ=60)

      AACTGGCAAGCCACGAACCACGGCTGATTCGGAACTTAGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCAT                                                                                         <  SRR4302537.6252781/94‑1 (MQ=60)

        CTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCT                                                                                       <  SRR4302537.6186186/94‑1 (MQ=60)

        CTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCT                                                                                       <  SRR4302537.2572757/94‑1 (MQ=60)

         TGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTT                                                                                      <  SRR4302537.1531151/94‑1 (MQ=60)

            CAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAA                                                                                   >  SRR4302537.1931316/1‑94 (MQ=60)

             AAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGACCTGCATCTTCAAT                                                                                  >  SRR4302537.3571701/1‑94 (MQ=60)

              AGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATC                                                                                 >  SRR4302537.3401477/1‑94 (MQ=60)

              AGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATC                                                                                 >  SRR4302537.92836/1‑94 (MQ=60)

               GCCACGACCCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCT                                                                                <  SRR4302537.1083170/94‑1 (MQ=60)

               GCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCT                                                                                >  SRR4302537.4456090/1‑94 (MQ=60)

               GCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCT                                                                                >  SRR4302537.206771/1‑94 (MQ=60)

               GCCACGAACCACGGGTGATTCAGAACTTCGATGATCTCGACCAACTGATCATCCCAGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCT                                                                                <  SRR4302537.2970023/94‑1 (MQ=60)

               ACCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCT                                                                                <  SRR4302537.6070471/94‑1 (MQ=60)

                CCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTG                                                                               >  SRR4302537.3882176/1‑94 (MQ=60)

                CCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTG                                                                               <  SRR4302537.1801272/94‑1 (MQ=60)

                CCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTG                                                                               <  SRR4302537.3604603/94‑1 (MQ=60)

                 CACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGT                                                                              <  SRR4302537.5006310/94‑1 (MQ=60)

                 CACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGT                                                                              >  SRR4302537.3046074/1‑94 (MQ=60)

                 CACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGT                                                                              <  SRR4302537.6067441/94‑1 (MQ=60)

                  CCGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTT                                                                             <  SRR4302537.2175979/94‑1 (MQ=60)

                  ACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTT                                                                             <  SRR4302537.3066876/94‑1 (MQ=60)

                  ACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTT                                                                             >  SRR4302537.1360023/1‑94 (MQ=60)

                   CGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTT                                                                            <  SRR4302537.752311/94‑1 (MQ=60)

                   CGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTT                                                                            <  SRR4302537.837718/94‑1 (MQ=60)

                   CGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTT                                                                            >  SRR4302537.4149795/1‑94 (MQ=60)

                     AACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCA                                                                          >  SRR4302537.1287305/1‑94 (MQ=60)

                     AACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCA                                                                          >  SRR4302537.3820704/1‑94 (MQ=60)

                      ACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAA                                                                         <  SRR4302537.5675040/94‑1 (MQ=60)

                       CCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAAC                                                                        <  SRR4302537.7382/94‑1 (MQ=60)

                       CCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAAC                                                                        <  SRR4302537.1193050/94‑1 (MQ=60)

                       CCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTCTCAAC                                                                        >  SRR4302537.1708059/1‑94 (MQ=60)

                        CACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACA                                                                       >  SRR4302537.2955964/1‑94 (MQ=60)

                        CACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACA                                                                       <  SRR4302537.3095799/94‑1 (MQ=60)

                        CACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACA                                                                       <  SRR4302537.1300870/94‑1 (MQ=60)

                         CCGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAG                                                                      <  SRR4302537.1645165/94‑1 (MQ=60)

                         ACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAG                                                                      <  SRR4302537.5806774/94‑1 (MQ=60)

                           GGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCA                                                                    <  SRR4302537.3686558/94‑1 (MQ=60)

                           GGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCA                                                                    >  SRR4302537.5798929/1‑94 (MQ=60)

                           GGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCA                                                                    <  SRR4302537.2826806/94‑1 (MQ=60)

                            GGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCAG                                                                   >  SRR4302537.6245069/1‑94 (MQ=60)

                              TGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGT                                                                 >  SRR4302537.2438400/1‑94 (MQ=60)

                               GATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTT                                                                <  SRR4302537.4917217/94‑1 (MQ=60)

                                ATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTG                                                               <  SRR4302537.42453/94‑1 (MQ=60)

                                ATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTG                                                               <  SRR4302537.2327346/94‑1 (MQ=60)

                                  TCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTT                                                             <  SRR4302537.4650645/94‑1 (MQ=60)

                                    GGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGA                                                           <  SRR4302537.5184238/94‑1 (MQ=60)

                                    GGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGA                                                           <  SRR4302537.730512/94‑1 (MQ=60)

                                    GGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTCCATCTTCAATCTGATTCAACAGCATGTTGTTGA                                                           >  SRR4302537.1655184/1‑94 (MQ=60)

                                     GAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGAC                                                          <  SRR4302537.4678246/94‑1 (MQ=60)

                                      AACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACT                                                         <  SRR4302537.34329/94‑1 (MQ=60)

                                      AACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACT                                                         >  SRR4302537.1254214/1‑94 (MQ=60)

                                      AACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACT                                                         <  SRR4302537.3519429/94‑1 (MQ=60)

                                      AACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACT                                                         <  SRR4302537.3053268/94‑1 (MQ=60)

                                       ACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTT                                                        <  SRR4302537.1643678/94‑1 (MQ=60)

                                        CTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTC                                                       <  SRR4302537.4758050/94‑1 (MQ=60)

                                        CTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTC                                                       <  SRR4302537.3244270/94‑1 (MQ=60)

                                         TTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCG                                                      >  SRR4302537.5480253/1‑94 (MQ=60)

                                            GATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAA                                                   <  SRR4302537.5977732/94‑1 (MQ=60)

                                            GATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAA                                                   >  SRR4302537.2628833/1‑94 (MQ=60)

                                             ATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAAC                                                  <  SRR4302537.5945361/94‑1 (MQ=60)

                                             ATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAAC                                                  <  SRR4302537.771242/94‑1 (MQ=60)

                                              TGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACG                                                 <  SRR4302537.5860642/94‑1 (MQ=60)

                                               GATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGG                                                >  SRR4302537.5717371/1‑94 (MQ=60)

                                               GATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTCGTTGACTTCGTAACGG                                                >  SRR4302537.5992861/1‑94 (MQ=60)

                                                ATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGT                                               <  SRR4302537.1596274/94‑1 (MQ=60)

                                                ATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGT                                               <  SRR4302537.2823316/94‑1 (MQ=60)

                                                 TCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTG                                              >  SRR4302537.802774/1‑94 (MQ=60)

                                                 TCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTG                                              <  SRR4302537.4270379/94‑1 (MQ=60)

                                                  CTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGA                                             <  SRR4302537.3460860/94‑1 (MQ=60)

                                                  CTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGA                                             >  SRR4302537.4253301/1‑94 (MQ=60)

                                                   TCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGAC                                            <  SRR4302537.2759277/94‑1 (MQ=60)

                                                    CGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACG                                           <  SRR4302537.3937721/94‑1 (MQ=60)

                                                    CGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACG                                           <  SRR4302537.4912625/94‑1 (MQ=60)

                                                    CGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACG                                           >  SRR4302537.3332911/1‑94 (MQ=60)

                                                    CGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACG                                           <  SRR4302537.6019005/94‑1 (MQ=60)

                                                    CGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACG                                           <  SRR4302537.5058961/94‑1 (MQ=60)

                                                      ACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGAT                                         <  SRR4302537.3616134/94‑1 (MQ=60)

                                                      ACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGAT                                         <  SRR4302537.1404015/94‑1 (MQ=60)

                                                      ACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGAT                                         <  SRR4302537.3181687/94‑1 (MQ=60)

                                                       CCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATG                                        <  SRR4302537.1844892/94‑1 (MQ=60)

                                                       CCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATG                                        >  SRR4302537.3919303/1‑94 (MQ=60)

                                                         AACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGAC                                      <  SRR4302537.5076737/94‑1 (MQ=60)

                                                          ACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACG                                     <  SRR4302537.3024236/94‑1 (MQ=60)

                                                          ACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACG                                     <  SRR4302537.1352388/94‑1 (MQ=60)

                                                          ACTGATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACG                                     >  SRR4302537.4602296/1‑94 (MQ=60)

                                                             GATCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTC                                  >  SRR4302537.2560787/1‑94 (MQ=60)

                                                               TCATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAA                                <  SRR4302537.3246898/94‑1 (MQ=60)

                                                                 ATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACA                              >  SRR4302537.588634/1‑94 (MQ=60)

                                                                 ATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACA                              >  SRR4302537.4165497/1‑94 (MQ=60)

                                                                 ATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACA                              >  SRR4302537.4131616/1‑94 (MQ=60)

                                                                 ATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACA                              >  SRR4302537.494246/1‑94 (MQ=60)

                                                                 ATCCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACA                              <  SRR4302537.4257216/94‑1 (MQ=60)

                                                                   CCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAAT                            >  SRR4302537.2857306/1‑94 (MQ=60)

                                                                   CCCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAAT                            >  SRR4302537.5539644/1‑94 (MQ=60)

                                                                    CCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATT                           >  SRR4302537.4481471/1‑94 (MQ=60)

                                                                    CCCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATT                           <  SRR4302537.5108599/94‑1 (MQ=60)

                                                                     CCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTG                          <  SRR4302537.871135/94‑1 (MQ=60)

                                                                     CCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTG                          <  SRR4302537.5258757/94‑1 (MQ=60)

                                                                     CCGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTG                          >  SRR4302537.5326865/1‑94 (MQ=60)

                                                                      CGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGT                         >  SRR4302537.3517593/1‑94 (MQ=60)

                                                                      CGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGT                         <  SRR4302537.5938173/94‑1 (MQ=60)

                                                                      CGGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTAGTAACGGTGACGATGACGCTCAACAATTGT                         >  SRR4302537.1352235/1‑94 (MQ=60)

                                                                       GGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTC                        <  SRR4302537.5528783/94‑1 (MQ=60)

                                                                       GGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTC                        >  SRR4302537.1817092/1‑94 (MQ=60)

                                                                       GGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTC                        >  SRR4302537.4707453/1‑94 (MQ=60)

                                                                       GGAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTC                        >  SRR4302537.5148779/1‑94 (MQ=60)

                                                                        GAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCG                       >  SRR4302537.3751079/1‑94 (MQ=60)

                                                                        GAACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCG                       <  SRR4302537.4131089/94‑1 (MQ=60)

                                                                         AACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGG                      <  SRR4302537.4536922/94‑1 (MQ=60)

                                                                         AACGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGG                      >  SRR4302537.4743849/1‑94 (MQ=60)

                                                                           CGGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCG                    >  SRR4302537.3039232/1‑94 (MQ=60)

                                                                            GGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGC                   >  SRR4302537.6454826/1‑94 (MQ=60)

                                                                            GGCCCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGC                   >  SRR4302537.4472536/1‑94 (MQ=60)

                                                                               CCGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATT                <  SRR4302537.2287377/94‑1 (MQ=60)

                                                                                CGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTG               >  SRR4302537.4908975/1‑94 (MQ=60)

                                                                                CGCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTG               <  SRR4302537.2651525/94‑1 (MQ=60)

                                                                                 GCAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGT              >  SRR4302537.5259979/1‑94 (MQ=60)

                                                                                  CAACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTA             <  SRR4302537.5570630/94‑1 (MQ=60)

                                                                                   AACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAC            <  SRR4302537.4811137/94‑1 (MQ=60)

                                                                                   AACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAC            <  SRR4302537.55600/94‑1 (MQ=60)

                                                                                   AACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAC            >  SRR4302537.5547566/1‑94 (MQ=60)

                                                                                   AACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAC            <  SRR4302537.2794631/94‑1 (MQ=60)

                                                                                   AACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTAC            <  SRR4302537.1725210/94‑1 (MQ=60)

                                                                                    ACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACA           <  SRR4302537.4162155/94‑1 (MQ=60)

                                                                                    ACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACA           >  SRR4302537.5317526/1‑94 (MQ=60)

                                                                                    ACGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACA           <  SRR4302537.2029113/94‑1 (MQ=60)

                                                                                     CGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAG          <  SRR4302537.2680146/94‑1 (MQ=60)

                                                                                     CGCGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAG          <  SRR4302537.2852844/94‑1 (MQ=60)

                                                                                       CGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGCCGATAACGTCCAACAATTTTCGCCGCATTGTACA‑CTG       >  SRR4302537.5232374/1‑94 (MQ=60)

                                                                                       CGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCT        <  SRR4302537.1498578/94‑1 (MQ=60)

                                                                                       CGCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCT        <  SRR4302537.5365256/94‑1 (MQ=60)

                                                                                        GCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTG       <  SRR4302537.1015031/94‑1 (MQ=60)

                                                                                        GCAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTG       >  SRR4302537.3835753/1‑94 (MQ=60)

                                                                                         CAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGG      >  SRR4302537.6247343/1‑94 (MQ=60)

                                                                                         CAGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGG      >  SRR4302537.4517536/1‑94 (MQ=60)

                                                                                          AGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGG     >  SRR4302537.4215320/1‑94 (MQ=60)

                                                                                          AGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGC     <  SRR4302537.3161051/94‑1 (MQ=60)

                                                                                          AGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGC     <  SRR4302537.5523890/94‑1 (MQ=60)

                                                                                          AGATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGC     <  SRR4302537.5515953/94‑1 (MQ=60)

                                                                                           GATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCG    <  SRR4302537.674447/94‑1 (MQ=60)

                                                                                            ATCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGA   >  SRR4302537.3265664/1‑94 (MQ=60)

                                                                                             TCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAA  <  SRR4302537.242394/94‑1 (MQ=60)

GGATGGAACTGGCAAGCCACGAACCACGGGTGATTCGGAACTTCGATGATCTCGACCAACTGATCATCCCCGGAACGGCCCGCAACGCGCAGACCTGCATCTTCAATCTGTTTCAACAGCATGTTGTTGACTTCGTAACGGTGACGATGACGCTCAACAATTGTCGGCGCATTGTACAGCTGGCGAA  >  NC_000913/2906142‑2906328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`