Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,926,403 C→T I51I (ATC→ATT)  sdaC → putative serine transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,926,4030CT94.0% 786.4 / 22.6 235I51I (ATC→ATT) sdaCputative serine transporter
Reads supporting (aligned to +/- strand):  ref base C (9/5);  new base T (102/119);  total (111/124)
Fisher's exact test for biased strand distribution p-value = 2.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.36e-01

Only 100 of 244 total aligned reads displayed.

CAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCC  >  NC_000913/2926312‑2926492
                                                                                           |                                                                                         
 agacaCCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATtcc                                                                                         >  2:1728452/1‑93 (MQ=255)
   acacCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGc                                                                                       <  1:5837920/93‑1 (MQ=255)
   acacCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGc                                                                                       <  2:3855440/93‑1 (MQ=255)
   acacCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGAGTTGGCGGTATGATTCCGc                                                                                       <  2:6324643/93‑1 (MQ=255)
     acCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTg                                                                                     >  1:2908994/1‑93 (MQ=255)
      cgaTGTGGATGCTGGTCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGa                                                                                    <  2:5595966/91‑1 (MQ=255)
      ccATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGa                                                                                    <  2:3279854/93‑1 (MQ=255)
        aTGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGatc                                                                                  <  1:2103787/93‑1 (MQ=255)
          gtgGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGatcat                                                                                >  2:3785489/1‑93 (MQ=255)
          gtgGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGatcat                                                                                >  1:3213994/1‑93 (MQ=255)
          gtgGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGatcat                                                                                >  2:6260570/1‑93 (MQ=255)
            ggATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGAtcatca                                                                              >  2:1077969/1‑93 (MQ=255)
             gATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATcatcat                                                                             <  1:4506757/93‑1 (MQ=255)
             gATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGCTGGCGGTATGATTCCGCTGATcatcat                                                                             >  2:4801998/1‑93 (MQ=255)
              gtGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATg                                                                            <  2:3147853/92‑1 (MQ=255)
              aTGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATg                                                                            <  1:2721012/93‑1 (MQ=255)
              aTGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATg                                                                            >  2:1398317/1‑93 (MQ=255)
              aTGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATg                                                                            <  2:2261857/93‑1 (MQ=255)
              aTGCTGGCCCTTTACGGCACGTCAATCGGCGCGGGCGTGCTGTGCCTGCCAATAAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATg                                                                            <  2:26730/93‑1 (MQ=255)
               tGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATgg                                                                           <  1:4789052/93‑1 (MQ=255)
               tGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATgg                                                                           >  2:323998/1‑93 (MQ=255)
                 cTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCt                                                                         >  1:4281810/1‑93 (MQ=255)
                 cTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCt                                                                         <  2:2858031/93‑1 (MQ=255)
                 cTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCt                                                                         >  2:6151708/1‑93 (MQ=255)
                   gggCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTAt                                                                       <  2:3654320/93‑1 (MQ=255)
                   gggCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTAt                                                                       >  2:5769810/1‑93 (MQ=255)
                    ggCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATc                                                                      >  2:3728732/1‑93 (MQ=255)
                    ggCCTTTACCGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATc                                                                      <  2:1626880/93‑1 (MQ=255)
                      ccTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCt                                                                    <  1:3616815/93‑1 (MQ=255)
                       cTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCtt                                                                   <  2:4945465/93‑1 (MQ=255)
                       cTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCtt                                                                   <  2:1899323/93‑1 (MQ=255)
                        tttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTg                                                                  >  2:4697739/1‑93 (MQ=255)
                        tttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTg                                                                  >  1:1170377/1‑93 (MQ=255)
                         ttACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGc                                                                 <  2:4483138/93‑1 (MQ=255)
                             ggcacggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTc                                                             <  1:1354881/93‑1 (MQ=255)
                              gcacggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTcc                                                            <  1:2536811/93‑1 (MQ=255)
                              gcacggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTcc                                                            <  1:6239999/93‑1 (MQ=255)
                              gcacggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTAGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTcc                                                            <  1:4556379/93‑1 (MQ=255)
                                acggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCg                                                          >  2:3424438/1‑93 (MQ=255)
                                 cggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGa                                                         <  2:1451320/93‑1 (MQ=255)
                                 cggcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGa                                                         >  1:3239950/1‑93 (MQ=255)
                                   gcaATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATg                                                       >  1:3528794/1‑93 (MQ=255)
                                     aaTCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGAc                                                     <  2:4346923/93‑1 (MQ=255)
                                      aTCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACg                                                    >  2:922754/1‑93 (MQ=255)
                                          gcgcGGGCTTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGtttt                                                <  2:2037779/93‑1 (MQ=255)
                                          gcgcGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGtttt                                                <  1:1014939/93‑1 (MQ=255)
                                           cgcgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGttttt                                               <  2:3916056/93‑1 (MQ=255)
                                           cgcgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGttttt                                               <  1:5398600/93‑1 (MQ=255)
                                            gcgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGtttttt                                              <  1:6353893/93‑1 (MQ=255)
                                            gcgGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGtttttt                                              >  2:1587320/1‑93 (MQ=255)
                                              gggCGTGCTGTTCCTGCCAATCTACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGc                                            >  2:3976024/1‑93 (MQ=255)
                                              gggCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGc                                            <  1:1258075/93‑1 (MQ=255)
                                               ggCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCt                                           <  2:2943045/93‑1 (MQ=255)
                                                gCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTc                                          >  2:5306745/1‑93 (MQ=255)
                                                gCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTc                                          >  1:3988770/1‑93 (MQ=255)
                                                gCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTc                                          <  2:1023075/93‑1 (MQ=255)
                                                 cGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCa                                         >  1:2790719/1‑93 (MQ=255)
                                                   tGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCATTGCGTTCCCGATGACGTTTTTTGCTCAcc                                       >  2:3028846/1‑93 (MQ=255)
                                                    gCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACcg                                      >  1:2037629/1‑93 (MQ=255)
                                                      tGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACcgcg                                    >  1:4223107/1‑93 (MQ=255)
                                                       gTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCgg                                   >  2:829344/1‑93 (MQ=255)
                                                        ttCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGc                                  <  2:1491569/93‑1 (MQ=255)
                                                           cTGCCAATCAACGCCGGTGTTGGAGGCATGATTGCGATGATCATCATGGGTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTg                               >  1:833874/1‑93 (MQ=255)
                                                            tGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGa                              <  1:5462914/93‑1 (MQ=255)
                                                             gCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAc                             <  1:1928741/93‑1 (MQ=255)
                                                             gCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAc                             >  1:2332528/1‑93 (MQ=255)
                                                             gCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAc                             <  2:455488/93‑1 (MQ=255)
                                                             gCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAc                             >  1:3900002/1‑93 (MQ=255)
                                                               cAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTc                           <  2:876334/93‑1 (MQ=255)
                                                               cAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTc                           >  1:5764276/1‑93 (MQ=255)
                                                                aaTCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCg                          >  1:2848182/1‑93 (MQ=255)
                                                                 aTCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTTCTTACCGCGGCCCTACTCGc                         >  2:2347884/1‑93 (MQ=255)
                                                                 aTCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGc                         >  2:5111282/1‑93 (MQ=255)
                                                                  tCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCt                        >  2:3190594/1‑93 (MQ=255)
                                                                  tCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCt                        <  2:3345968/93‑1 (MQ=255)
                                                                  tCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCt                        <  1:4996482/93‑1 (MQ=255)
                                                                    aaCGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTc                      <  2:5398785/93‑1 (MQ=255)
                                                                     aCGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCg                     >  1:3843335/1‑93 (MQ=255)
                                                                     aCGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCg                     >  1:958136/1‑93 (MQ=255)
                                                                        ccGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTAc                  <  1:1534792/93‑1 (MQ=255)
                                                                         cGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACt                 >  2:1166993/1‑93 (MQ=255)
                                                                            tgtTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTc              <  1:4671872/93‑1 (MQ=255)
                                                                            tgtTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTc              <  1:4818062/93‑1 (MQ=255)
                                                                              ttGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTg            <  1:3698688/93‑1 (MQ=255)
                                                                              ttGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTg            >  1:4411586/1‑93 (MQ=255)
                                                                              ttGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTg            <  2:4915051/93‑1 (MQ=255)
                                                                               tGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTgg           <  1:4600439/93‑1 (MQ=255)
                                                                                ggCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGt          <  2:4842566/93‑1 (MQ=255)
                                                                                 gCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTa         <  2:624632/93‑1 (MQ=255)
                                                                                  gggTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaa        <  1:3096809/92‑1 (MQ=255)
                                                                                   ggTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaa       <  1:1244018/93‑1 (MQ=255)
                                                                                   ggTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaa       >  2:5695539/1‑93 (MQ=255)
                                                                                    gTATGATTCCTCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaa      <  1:1093945/93‑1 (MQ=255)
                                                                                    gTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaa      >  2:275394/1‑93 (MQ=255)
                                                                                     tATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaaa     <  1:6458253/93‑1 (MQ=255)
                                                                                     tATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaaa     >  1:347213/1‑93 (MQ=255)
                                                                                     tATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTaaaaa     >  1:4958494/1‑93 (MQ=255)
                                                                                       tGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAcc   <  2:5055200/93‑1 (MQ=255)
                                                                                       tGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAcc   >  1:908074/1‑93 (MQ=255)
                                                                                        gATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAccc  >  2:5980047/1‑93 (MQ=255)
                                                                                           |                                                                                         
CAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCC  >  NC_000913/2926312‑2926492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGC  >  NC_000913/2926310‑2926496
                                                                                             |                                                                                             
GACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATT                                                                                               <  SRR4302537.692544/94‑1 (MQ=60)
GACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATT                                                                                               >  SRR4302537.784497/1‑94 (MQ=60)
 ACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTC                                                                                              <  SRR4302537.749250/94‑1 (MQ=60)
  CAGACACCATGTGGCTGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCC                                                                                             <  SRR4302537.3583609/94‑1 (MQ=60)
  CAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCC                                                                                             <  SRR4302537.5054220/94‑1 (MQ=60)
   AGACACCATGTGGATGCTGGGCCTTTACGGGACGGCAATCGGCGCGGGCGGGCTGTTCCTGCCAATCAACGCCGGTGTGGGCGGTATGATTCCG                                                                                            >  SRR4302537.6038359/1‑94 (MQ=60)
   AGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCG                                                                                            >  SRR4302537.4674922/1‑94 (MQ=60)
    GACACCATGTGGACGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGC                                                                                           <  SRR4302537.3361288/94‑1 (MQ=60)
     ACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCT                                                                                          <  SRR4302537.5877933/94‑1 (MQ=60)
     ACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCT                                                                                          >  SRR4302537.4810618/1‑94 (MQ=60)
     ACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCT                                                                                          >  SRR4302537.2644301/1‑94 (MQ=60)
      CACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTG                                                                                         <  SRR4302537.4837603/94‑1 (MQ=60)
      CACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTG                                                                                         >  SRR4302537.2265968/1‑94 (MQ=60)
      CACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTG                                                                                         >  SRR4302537.2929432/1‑94 (MQ=60)
       ACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGA                                                                                        >  SRR4302537.3260777/1‑94 (MQ=60)
        CCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGAT                                                                                       <  SRR4302537.4559596/94‑1 (MQ=60)
         CATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATC                                                                                      >  SRR4302537.2416299/1‑94 (MQ=60)
          ATGTGGATTCTGGGCCTTTACGCCACCGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCA                                                                                     <  SRR4302537.2702909/94‑1 (MQ=60)
          ATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCA                                                                                     <  SRR4302537.2118617/94‑1 (MQ=60)
          ATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCA                                                                                     <  SRR4302537.3980287/94‑1 (MQ=60)
           TGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCAT                                                                                    >  SRR4302537.3236612/1‑94 (MQ=60)
             TGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCA                                                                                  <  SRR4302537.2748812/94‑1 (MQ=60)
              GGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCCTCAT                                                                                 >  SRR4302537.1130421/1‑94 (MQ=60)
               GATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATG                                                                                <  SRR4302537.4537922/94‑1 (MQ=60)
                ATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGG                                                                               <  SRR4302537.4942386/94‑1 (MQ=60)
                ATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGG                                                                               <  SRR4302537.2740014/94‑1 (MQ=60)
                 TGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGC                                                                              <  SRR4302537.4822107/94‑1 (MQ=60)
                  GCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCT                                                                             >  SRR4302537.4311577/1‑94 (MQ=60)
                  GCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCT                                                                             <  SRR4302537.344154/94‑1 (MQ=60)
                   CTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTA                                                                            <  SRR4302537.5221728/94‑1 (MQ=60)
                     GGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATC                                                                          >  SRR4302537.5816315/1‑94 (MQ=60)
                     GGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGCGTTGGCGGTATGATTCCGCTGATCATCATGGCTATC                                                                          >  SRR4302537.296508/1‑94 (MQ=60)
                      GGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCC                                                                         >  SRR4302537.1194646/1‑94 (MQ=60)
                      GGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCC                                                                         >  SRR4302537.4929117/1‑94 (MQ=60)
                        CCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTT                                                                       <  SRR4302537.3642314/94‑1 (MQ=60)
                        CCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTT                                                                       >  SRR4302537.2073147/1‑94 (MQ=60)
                         CTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTG                                                                      >  SRR4302537.1178521/1‑94 (MQ=60)
                          TTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGC                                                                     <  SRR4302537.1975082/94‑1 (MQ=60)
                           TTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCG                                                                    <  SRR4302537.287263/94‑1 (MQ=60)
                             ACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTT                                                                  <  SRR4302537.4435704/94‑1 (MQ=60)
                               GGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCC                                                                <  SRR4302537.1364324/94‑1 (MQ=60)
                                GCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCC                                                               <  SRR4302537.3619704/94‑1 (MQ=60)
                                GCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCC                                                               <  SRR4302537.2554612/94‑1 (MQ=60)
                                GCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCC                                                               <  SRR4302537.6282899/94‑1 (MQ=60)
                                GCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTAGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCC                                                               <  SRR4302537.4587925/94‑1 (MQ=60)
                                  ACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGA                                                             >  SRR4302537.3262787/1‑94 (MQ=60)
                                   CGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGAT                                                            <  SRR4302537.5766741/94‑1 (MQ=60)
                                    GGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATG                                                           >  SRR4302537.3553749/1‑94 (MQ=60)
                                      CAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCTGCTGATCATCATGGCTATCCTTGCGTTCCCGATGAC                                                         >  SRR4302537.930391/1‑94 (MQ=60)
                                       AATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACG                                                        >  SRR4302537.1717176/1‑94 (MQ=60)
                                       AATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACG                                                        >  SRR4302537.1299856/1‑94 (MQ=60)
                                         TCGGCGCGGGCGTGCTTTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTT                                                      <  SRR4302537.4640787/94‑1 (MQ=60)
                                          CGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTT                                                     >  SRR4302537.5739911/1‑94 (MQ=60)
                                           GGCGCGGGCGTGCTGTTCCTTCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTT                                                    >  SRR4302537.3745372/1‑94 (MQ=60)
                                            GCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTT                                                   <  SRR4302537.1021928/94‑1 (MQ=60)
                                             CGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTT                                                  <  SRR4302537.5435452/94‑1 (MQ=60)
                                             CGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTT                                                  >  SRR4302537.3822408/1‑94 (MQ=60)
                                              GCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTG                                                 <  SRR4302537.6397265/94‑1 (MQ=60)
                                               CGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGC                                                >  SRR4302537.6378989/1‑94 (MQ=60)
                                               CGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGC                                                >  SRR4302537.1266687/1‑94 (MQ=60)
                                                GGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCT                                               <  SRR4302537.1266833/94‑1 (MQ=60)
                                                 GGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTC                                              <  SRR4302537.741346/94‑1 (MQ=60)
                                                 GGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTC                                              >  SRR4302537.4016701/1‑94 (MQ=60)
                                                  GCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCA                                             <  SRR4302537.1084544/94‑1 (MQ=60)
                                                  GCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCA                                             >  SRR4302537.2810225/1‑94 (MQ=60)
                                                   CGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTTCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCAC                                            >  SRR4302537.4592201/1‑94 (MQ=60)
                                                     TGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCG                                          >  SRR4302537.2051838/1‑94 (MQ=60)
                                                     TGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATAATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCG                                          <  SRR4302537.4355124/94‑1 (MQ=60)
                                                       CTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCG                                        >  SRR4302537.4252521/1‑94 (MQ=60)
                                                        TGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGG                                       >  SRR4302537.294852/1‑94 (MQ=60)
                                                         GTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGC                                      >  SRR4302537.893183/1‑94 (MQ=60)
                                                          TTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCC                                     >  SRR4302537.3507418/1‑94 (MQ=60)
                                                           TCCTGCCAATCACCGCCGGTGTTGGCGGTATGATTCCGCTCATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCT                                    <  SRR4302537.5931468/94‑1 (MQ=60)
                                                            CCTGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG                                   >  SRR4302537.933628/1‑94 (MQ=60)
                                                            CCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG                                   >  SRR4302537.3893880/1‑94 (MQ=60)
                                                            CCTGCCAATCAACGCCGGTGTTGGAGGCATGATTGCGATGATCATCATGGGTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTG                                   >  SRR4302537.839581/1‑94 (MQ=60)
                                                              TGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAC                                 >  SRR4302537.3927267/1‑94 (MQ=60)
                                                              TGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAC                                 <  SRR4302537.5500179/94‑1 (MQ=60)
                                                              TGCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGAC                                 >  SRR4302537.2348973/1‑94 (MQ=60)
                                                               GCCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACT                                <  SRR4302537.1942125/94‑1 (MQ=60)
                                                                CCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTC                               >  SRR4302537.2865955/1‑94 (MQ=60)
                                                                CCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTC                               <  SRR4302537.6416476/94‑1 (MQ=60)
                                                                CCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTC                               >  SRR4302537.2242137/1‑94 (MQ=60)
                                                                CCAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTC                               >  SRR4302537.5803759/1‑94 (MQ=60)
                                                                 CAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG                              >  SRR4302537.2868125/1‑94 (MQ=60)
                                                                 CAATCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCG                              >  SRR4302537.5250079/1‑94 (MQ=60)
                                                                  AATCAACGCCGATGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGC                             <  SRR4302537.4568882/94‑1 (MQ=60)
                                                                   ATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGGTTGTTGCTCACCGAGGCCTCACTCGAT                            >  SRR4302537.2644775/1‑94 (MQ=60)
                                                                    TCAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTT                           <  SRR4302537.319827/94‑1 (MQ=60)
                                                                    TCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTT                           <  SRR4302537.5030915/94‑1 (MQ=60)
                                                                     CAACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTC                          >  SRR4302537.2858690/1‑94 (MQ=60)
                                                                      AACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCG                         >  SRR4302537.964746/1‑94 (MQ=60)
                                                                      AACGCCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCG                         >  SRR4302537.3870252/1‑94 (MQ=60)
                                                                          CCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACT                     <  SRR4302537.4995647/94‑1 (MQ=60)
                                                                          CCGGTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACT                     <  SRR4302537.1545512/94‑1 (MQ=60)
                                                                          CCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACT                     <  SRR4302537.1424082/94‑1 (MQ=60)
                                                                             GTGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTC                  <  SRR4302537.3939696/94‑1 (MQ=60)
                                                                              TGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCT                 <  SRR4302537.4851330/94‑1 (MQ=60)
                                                                              TGTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCT                 <  SRR4302537.4704198/94‑1 (MQ=60)
                                                                               GTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTG                <  SRR4302537.1226520/94‑1 (MQ=60)
                                                                               GTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTG                <  SRR4302537.4498153/94‑1 (MQ=60)
                                                                               GTTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTG                >  SRR4302537.4442030/1‑94 (MQ=60)
                                                                                TTGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGG               <  SRR4302537.3724713/94‑1 (MQ=60)
                                                                                 TGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACTTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGT              <  SRR4302537.1355905/94‑1 (MQ=60)
                                                                                 TGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGT              >  SRR4302537.412193/1‑94 (MQ=60)
                                                                                 TGGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGT              <  SRR4302537.4632282/94‑1 (MQ=60)
                                                                                  GGCGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTA             >  SRR4302537.3688970/1‑94 (MQ=60)
                                                                                    GGGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAA           <  SRR4302537.3118420/94‑1 (MQ=60)
                                                                                     GGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAA          <  SRR4302537.1252687/94‑1 (MQ=60)
                                                                                     GGTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAA          >  SRR4302537.1689675/1‑94 (MQ=60)
                                                                                      GTATGATTCCTCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAA         <  SRR4302537.1101500/94‑1 (MQ=60)
                                                                                      GTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAA         >  SRR4302537.4992675/1‑94 (MQ=60)
                                                                                      GTATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAA         >  SRR4302537.349626/1‑94 (MQ=60)
                                                                                       TATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAC        <  SRR4302537.6502021/94‑1 (MQ=60)
                                                                                       TATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAAC        <  SRR4302537.5436114/94‑1 (MQ=60)
                                                                                        ATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACC       >  SRR4302537.667976/1‑94 (MQ=60)
                                                                                        ATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACC       <  SRR4302537.302211/94‑1 (MQ=60)
                                                                                        ATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACC       >  SRR4302537.914349/1‑94 (MQ=60)
                                                                                        ATGATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACC       <  SRR4302537.4252575/94‑1 (MQ=60)
                                                                                           ATTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGG    >  SRR4302537.3580105/1‑94 (MQ=60)
                                                                                            TTCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGG   <  SRR4302537.1895702/94‑1 (MQ=60)
                                                                                             TCCGCTGATCATCATGTCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGC  <  SRR4302537.4813962/94‑1 (MQ=60)
                                                                                             TCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGC  >  SRR4302537.2666279/1‑94 (MQ=60)
                                                                                             |                                                                                             
GACAGACACCATGTGGATGCTGGGCCTTTACGGCACGGCAATCGGCGCGGGCGTGCTGTTCCTGCCAATCAACGCCGGTGTTGGCGGTATGATCCCGCTGATCATCATGGCTATCCTTGCGTTCCCGATGACGTTTTTTGCTCACCGCGGCCTGACTCGCTTCGTACTGTCTGGTAAAAACCCGGGC  >  NC_000913/2926310‑2926496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑