Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,939,218	G→A	C16C (TGC→TGT)	ygdE ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,939,218	0	G	A	99.2%	870.0 / NA	249	C16C (TGC→TGT)	ygdE	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (119/128); total (121/128)
Fisher's exact test for biased strand distribution p-value = 2.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 261 total aligned reads displayed.

ACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCGCACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACA  >  NC_000913/2939128‑2939307

  aTTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACAct                                                                                       >  1:1296582/1‑93 (MQ=255)

   ttCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACActc                                                                                      >  1:5521345/1‑93 (MQ=255)

   ttCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACActc                                                                                      <  2:1993299/93‑1 (MQ=255)

    tCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACActct                                                                                     <  2:3816200/93‑1 (MQ=255)

    tCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACActct                                                                                     >  2:1055576/1‑93 (MQ=255)

    tCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACActct                                                                                     <  1:4541331/93‑1 (MQ=255)

     taTAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCtt                                                                                    <  1:3432440/92‑1 (MQ=255)

      aTAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCttt                                                                                   >  2:2816757/1‑93 (MQ=255)

        aaaTGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCttttt                                                                                 <  1:6323600/93‑1 (MQ=255)

         aaTGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGTACACTCTTTTTc                                                                                >  1:1108536/1‑93 (MQ=255)

          aTGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCa                                                                               >  2:3998068/1‑93 (MQ=255)

           tGACATACCCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCaa                                                                              <  2:16147/93‑1 (MQ=255)

            gACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCaaa                                                                             <  1:2530379/93‑1 (MQ=255)

             aCATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACCCTCTTTTTCAAAg                                                                            <  1:1905585/93‑1 (MQ=255)

             aCATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAg                                                                            <  1:5077573/93‑1 (MQ=255)

             aCATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAg                                                                            >  1:4349017/1‑93 (MQ=255)

              cATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGc                                                                           >  1:648703/1‑93 (MQ=255)

               aTAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGcc                                                                          <  1:85622/93‑1 (MQ=255)

               aTAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGcc                                                                          >  2:1220676/1‑93 (MQ=255)

                tAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGccc                                                                         >  2:2642277/1‑93 (MQ=255)

                  aCCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCgg                                                                       >  2:5996733/1‑93 (MQ=255)

                  aCCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCgg                                                                       <  2:301324/93‑1 (MQ=255)

                   cccGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCggt                                                                      >  1:3559974/1‑92 (MQ=255)

                   cccGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGa                                                                      <  1:5788301/93‑1 (MQ=255)

                   cccGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGa                                                                      <  1:4978627/93‑1 (MQ=255)

                   cccGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGa                                                                      <  2:4477949/93‑1 (MQ=255)

                    ccGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAc                                                                     <  2:2933682/93‑1 (MQ=255)

                      gccttCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTCTATCCGTCATTTCTGCGGCACACTCTTTTTCCAAGCCCGGCCgc                                                                   >  1:2789560/4‑92 (MQ=255)

                       cATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGc                                                                  >  1:6385882/1‑93 (MQ=255)

                       cATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGc                                                                  <  1:784360/93‑1 (MQ=255)

                         ttCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGcac                                                                >  1:2843921/1‑93 (MQ=255)

                          tctcTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGcaca                                                               <  1:1431174/93‑1 (MQ=255)

                          tctcTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGcaca                                                               >  2:2754565/1‑93 (MQ=255)

                          tctcTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGcaca                                                               >  2:4616471/1‑93 (MQ=255)

                          tctcTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGcaca                                                               >  1:5667916/1‑93 (MQ=255)

                            tctTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGc                                                             >  1:2417315/1‑93 (MQ=255)

                             ctTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCa                                                            >  1:2425770/1‑93 (MQ=255)

                                 cACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATAc                                                        <  2:4404422/93‑1 (MQ=255)

                                  aCGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACa                                                       >  1:6153915/1‑93 (MQ=255)

                                  aCGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACa                                                       <  2:4732296/93‑1 (MQ=255)

                                    gcgGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAAc                                                     <  1:3732253/93‑1 (MQ=255)

                                    gcgGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAAc                                                     <  2:5094664/93‑1 (MQ=255)

                                    gcgGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAAc                                                     >  2:1813672/1‑93 (MQ=255)

                                      gggCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCt                                                   <  2:6425323/93‑1 (MQ=255)

                                      gggCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCt                                                   <  2:3273346/93‑1 (MQ=255)

                                       ggCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCtt                                                  >  2:626303/1‑93 (MQ=255)

                                        gCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTa                                                 >  1:3642070/1‑93 (MQ=255)

                                        gCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTa                                                 <  2:430775/93‑1 (MQ=255)

                                           aaaCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACGCTCTTTTTCGAAGCCCGGACGGCACAGCAATACAACCTTATTc                                              <  2:3722019/93‑1 (MQ=255)

                                           aaaCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTc                                              >  1:5967525/1‑93 (MQ=255)

                                           aaaCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTc                                              <  1:1044163/93‑1 (MQ=255)

                                            aaCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCa                                             <  1:1177982/93‑1 (MQ=255)

                                             aCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCAt                                            <  1:1699284/93‑1 (MQ=255)

                                             aCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCAt                                            <  2:4858224/93‑1 (MQ=255)

                                             aCCGAAAATTTCCCGCTGGACGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCAt                                            >  2:6298224/1‑93 (MQ=255)

                                              gcGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATg                                           <  1:6208317/92‑1 (MQ=255)

                                              ccGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATg                                           >  1:2349520/1‑93 (MQ=255)

                                                gAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGAc                                         <  2:5348442/93‑1 (MQ=255)

                                                gAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGAc                                         >  2:2274588/1‑93 (MQ=255)

                                                  aaaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACtt                                       <  2:1890225/93‑1 (MQ=255)

                                                  aaaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACtt                                       <  2:3072272/93‑1 (MQ=255)

                                                  aaaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACtt                                       <  2:6073651/93‑1 (MQ=255)

                                                   aaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTa                                      <  1:15903/93‑1 (MQ=255)

                                                   aaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTa                                      <  1:4482719/93‑1 (MQ=255)

                                                   aaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTa                                      >  1:5219972/1‑93 (MQ=255)

                                                   aaTTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTa                                      >  2:67201/1‑93 (MQ=255)

                                                     tttCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACg                                    >  1:3424086/1‑93 (MQ=255)

                                                     tttCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACg                                    <  1:3982937/93‑1 (MQ=255)

                                                       tCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGcc                                  >  1:3896073/1‑93 (MQ=255)

                                                        cccTCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGccc                                 >  1:5408521/1‑93 (MQ=255)

                                                        cccGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGccc                                 <  1:2980373/93‑1 (MQ=255)

                                                          cGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCtt                               >  1:2225920/1‑93 (MQ=255)

                                                           gCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTg                              <  2:4793678/93‑1 (MQ=255)

                                                           gCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTg                              >  2:5546905/1‑93 (MQ=255)

                                                           gCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTg                              >  2:15402/1‑93 (MQ=255)

                                                            cTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTgc                             >  2:3619527/1‑93 (MQ=255)

                                                            cTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTgc                             <  1:4463776/93‑1 (MQ=255)

                                                              ggCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTgcgc                           >  1:3250160/1‑93 (MQ=255)

                                                                 cGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCttt                        <  1:2639979/93‑1 (MQ=255)

                                                                  ggCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTa                       >  2:3942561/1‑93 (MQ=255)

                                                                   gCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTaa                      <  2:3592998/93‑1 (MQ=255)

                                                                   gCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTaa                      <  1:6080703/93‑1 (MQ=255)

                                                                    cTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTaaa                     <  2:5822291/93‑1 (MQ=255)

                                                                    cTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTaaa                     >  2:864023/1‑93 (MQ=255)

                                                                    cTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTaaa                     <  1:804149/93‑1 (MQ=255)

                                                                     tttATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAAc                    <  1:1712114/93‑1 (MQ=255)

                                                                       tATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACgg                  <  1:6251518/93‑1 (MQ=255)

                                                                       tATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACgg                  >  1:4882567/1‑93 (MQ=255)

                                                                        aTCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGa                 <  2:817581/93‑1 (MQ=255)

                                                                         tCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGAt                >  2:417512/1‑93 (MQ=255)

                                                                         tCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGAt                <  2:578973/93‑1 (MQ=255)

                                                                         tCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGAt                >  1:4651390/1‑93 (MQ=255)

                                                                          cGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATa               <  2:421339/93‑1 (MQ=255)

                                                                           ggTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAg              <  1:1165808/93‑1 (MQ=255)

                                                                             tAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCa            <  2:3687160/93‑1 (MQ=255)

                                                                              aaTTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCAc           >  1:5339601/1‑93 (MQ=255)

                                                                               aTTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCAcc          <  2:612959/93‑1 (MQ=255)

                                                                                 ttCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCaa        >  2:1435042/1‑93 (MQ=255)

                                                                                   cTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACt      <  2:5642227/93‑1 (MQ=255)

                                                                                       ggcaCACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACa  <  2:2509642/93‑1 (MQ=255)

ACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCGCACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACA  >  NC_000913/2939128‑2939307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATAACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCGCACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATTAA  >  NC_000913/2939125‑2939311

ATAACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCA                                                                                               >  SRR4302537.5570798/1‑94 (MQ=60)

ATAACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCA                                                                                               >  SRR4302537.5486/1‑94 (MQ=60)

 TAACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCAC                                                                                              >  SRR4302537.2194757/1‑94 (MQ=60)

   ACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACAC                                                                                            >  SRR4302537.2939684/1‑94 (MQ=60)

    CATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACT                                                                                           >  SRR4302537.1305595/1‑94 (MQ=60)

     ATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTC                                                                                          >  SRR4302537.1115315/1‑94 (MQ=60)

     ATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTC                                                                                          >  SRR4302537.5559038/1‑94 (MQ=60)

      TTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCT                                                                                         >  SRR4302537.6492513/1‑94 (MQ=60)

       TCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTT                                                                                        <  SRR4302537.2442273/94‑1 (MQ=60)

       TCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTT                                                                                        <  SRR4302537.4572767/94‑1 (MQ=60)

        TATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTT                                                                                       <  SRR4302537.3456734/94‑1 (MQ=60)

        CATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTT                                                                                       >  SRR4302537.6227000/1‑94 (MQ=60)

        CATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTT                                                                                       <  SRR4302537.1173703/94‑1 (MQ=60)

         ATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTT                                                                                      <  SRR4302537.5506061/94‑1 (MQ=60)

         ATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTT                                                                                      <  SRR4302537.6396261/94‑1 (MQ=60)

          TAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTT                                                                                     <  SRR4302537.2654215/94‑1 (MQ=60)

           AAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGTACACTCTTTTTC                                                                                    >  SRR4302537.1116200/1‑94 (MQ=60)

           AAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTC                                                                                    >  SRR4302537.5082241/1‑94 (MQ=60)

           AAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTC                                                                                    <  SRR4302537.6366862/94‑1 (MQ=60)

           AAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTC                                                                                    <  SRR4302537.6366861/94‑1 (MQ=60)

             ATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAA                                                                                  >  SRR4302537.2809755/1‑94 (MQ=60)

               GACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAG                                                                                <  SRR4302537.2548132/94‑1 (MQ=60)

               GACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAG                                                                                >  SRR4302537.4379151/1‑94 (MQ=60)

                ACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACCCTCTTTTTCAAAGC                                                                               <  SRR4302537.1918822/94‑1 (MQ=60)

                ACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGC                                                                               >  SRR4302537.653126/1‑94 (MQ=60)

                ACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGC                                                                               <  SRR4302537.5112528/94‑1 (MQ=60)

                  ATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCC                                                                             <  SRR4302537.86244/94‑1 (MQ=60)

                  ATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTATTTTTCAAAGCCC                                                                             <  SRR4302537.3511918/94‑1 (MQ=60)

                     ACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGT                                                                          >  SRR4302537.3585088/1‑94 (MQ=60)

                     ACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGC                                                                          >  SRR4302537.4492790/1‑94 (MQ=60)

                     ACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGA                                                                          >  SRR4302537.5310986/1‑94 (MQ=60)

                      CCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAC                                                                         >  SRR4302537.6183550/1‑94 (MQ=60)

                      CCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAC                                                                         <  SRR4302537.5827994/94‑1 (MQ=60)

                      CCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAC                                                                         <  SRR4302537.5012942/94‑1 (MQ=60)

                      CCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAC                                                                         <  SRR4302537.5174075/94‑1 (MQ=60)

                      CCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAC                                                                         >  SRR4302537.3956621/1‑94 (MQ=60)

                       CCGCATTCTCTTTCACGCGGGCAAAGCCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGTACG                                                                        <  SRR4302537.180728/94‑1 (MQ=60)

                       CCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCACAGCCCAGACG                                                                        >  SRR4302537.1180211/1‑94 (MQ=60)

                       CCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACG                                                                        >  SRR4302537.5933415/1‑94 (MQ=60)

                       CCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACG                                                                        <  SRR4302537.6465260/94‑1 (MQ=60)

                        CGCCTTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTCTATCCGTCATTTCTGCGGCACACTCTTTTTCCAAGCCCGGccgc                                                                       >  SRR4302537.2809059/1‑90 (MQ=60)

                        CGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGG                                                                       <  SRR4302537.3007163/94‑1 (MQ=60)

                        CGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGG                                                                       <  SRR4302537.1316204/94‑1 (MQ=60)

                         GCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGC                                                                      >  SRR4302537.4555445/1‑94 (MQ=60)

                         GCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGC                                                                      >  SRR4302537.6429405/1‑94 (MQ=60)

                         CCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGC                                                                      <  SRR4302537.5389722/94‑1 (MQ=60)

                          CATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCA                                                                     >  SRR4302537.1977335/1‑94 (MQ=60)

                          CATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCA                                                                     >  SRR4302537.3849411/1‑94 (MQ=60)

                          CATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCA                                                                     <  SRR4302537.789741/94‑1 (MQ=60)

                           ATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCCC                                                                    >  SRR4302537.813649/1‑94 (MQ=60)

                           ATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCAC                                                                    >  SRR4302537.2461361/1‑94 (MQ=60)

                           ATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCAC                                                                    >  SRR4302537.2863825/1‑94 (MQ=60)

                           ATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCAC                                                                    >  SRR4302537.1195223/1‑94 (MQ=60)

                            TTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCGCcctgtttttcccggcccggacggccag                                                                   >  SRR4302537.6259241/1‑67 (MQ=60)

                            TTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCGCACTCTTTTTCAAAGCCCGGACGGCACA                                                                   >  SRR4302537.6259242/1‑94 (MQ=60)

                            TTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACA                                                                   >  SRR4302537.5706697/1‑94 (MQ=60)

                             TCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAG                                                                  <  SRR4302537.4614904/94‑1 (MQ=60)

                             TCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAG                                                                  <  SRR4302537.1441137/94‑1 (MQ=60)

                              CTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGC                                                                 >  SRR4302537.2434319/1‑94 (MQ=60)

                               TCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCA                                                                >  SRR4302537.2442862/1‑94 (MQ=60)

                                   TCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATAC                                                            <  SRR4302537.2498982/94‑1 (MQ=60)

                                    CACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACA                                                           >  SRR4302537.2756131/1‑94 (MQ=60)

                                    CACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACA                                                           >  SRR4302537.6196253/1‑94 (MQ=60)

                                       GCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACC                                                        <  SRR4302537.3758470/94‑1 (MQ=60)

                                        CGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCT                                                       >  SRR4302537.6304700/1‑94 (MQ=60)

                                        CGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCT                                                       <  SRR4302537.5412363/94‑1 (MQ=60)

                                         GGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTT                                                      <  SRR4302537.6040672/94‑1 (MQ=60)

                                          GGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACTCTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTA                                                     <  SRR4302537.1493241/94‑1 (MQ=60)

                                          GGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTA                                                     >  SRR4302537.3667724/1‑94 (MQ=60)

                                            CAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATT                                                   >  SRR4302537.4929490/1‑94 (MQ=60)

                                            CAAAACCGAAAATTCCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATT                                                   <  SRR4302537.4817868/94‑1 (MQ=60)

                                             AAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTC                                                  >  SRR4302537.6008483/1‑94 (MQ=60)

                                             AAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTC                                                  >  SRR4302537.2859262/1‑94 (MQ=60)

                                              AAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCA                                                 <  SRR4302537.1051369/94‑1 (MQ=60)

                                               AACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCAT                                                <  SRR4302537.1186173/94‑1 (MQ=60)

                                               AACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCAT                                                >  SRR4302537.788196/1‑94 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACAGTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               <  SRR4302537.2416382/94‑1 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               <  SRR4302537.1711166/94‑1 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               <  SRR4302537.3475497/94‑1 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               >  SRR4302537.1704978/1‑94 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               >  SRR4302537.3312771/1‑94 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               >  SRR4302537.2366065/1‑94 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               <  SRR4302537.5479977/94‑1 (MQ=60)

                                                ACCGAAAATTTCCCGCTGGCCGGCTTTAGCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               <  SRR4302537.2416381/94‑1 (MQ=60)

                                                ACCGAAAATTTCCCGCTGCCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATG                                               <  SRR4302537.3651318/94‑1 (MQ=60)

                                                 GCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGA                                              <  SRR4302537.6251090/94‑1 (MQ=60)

                                                 CCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGA                                              >  SRR4302537.1934364/1‑94 (MQ=60)

                                                  CGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGAC                                             >  SRR4302537.3636821/1‑94 (MQ=60)

                                                   GAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACT                                            >  SRR4302537.5704464/1‑94 (MQ=60)

                                                    AAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTT                                           <  SRR4302537.4335467/94‑1 (MQ=60)

                                                    AAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTT                                           <  SRR4302537.1415722/94‑1 (MQ=60)

                                                    AAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTT                                           <  SRR4302537.807391/94‑1 (MQ=60)

                                                     AAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTA                                          >  SRR4302537.5783682/1‑94 (MQ=60)

                                                     AAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTA                                          >  SRR4302537.1232237/1‑94 (MQ=60)

                                                     AAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTA                                          >  SRR4302537.5255872/1‑94 (MQ=60)

                                                      AATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTAC                                         <  SRR4302537.16033/94‑1 (MQ=60)

                                                      AATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTAC                                         <  SRR4302537.4513729/94‑1 (MQ=60)

                                                      AATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTAC                                         <  SRR4302537.451424/94‑1 (MQ=60)

                                                       ATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACG                                        <  SRR4302537.3739412/94‑1 (MQ=60)

                                                       ATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACG                                        >  SRR4302537.3893194/1‑94 (MQ=60)

                                                       ATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACG                                        >  SRR4302537.3448325/1‑94 (MQ=60)

                                                        TTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGC                                       <  SRR4302537.4010822/94‑1 (MQ=60)

                                                         TTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCC                                      >  SRR4302537.3923309/1‑94 (MQ=60)

                                                          TCCCTCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCC                                     >  SRR4302537.5445409/1‑94 (MQ=60)

                                                           CCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCT                                    <  SRR4302537.1168009/94‑1 (MQ=60)

                                                           CCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCT                                    <  SRR4302537.2652637/94‑1 (MQ=60)

                                                           CCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCT                                    <  SRR4302537.3001221/94‑1 (MQ=60)

                                                            CCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTT                                   >  SRR4302537.2241618/1‑94 (MQ=60)

                                                             CGCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTG                                  >  SRR4302537.4936798/1‑94 (MQ=60)

                                                              GCTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGC                                 <  SRR4302537.1719409/94‑1 (MQ=60)

                                                               CTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCG                                <  SRR4302537.4494649/94‑1 (MQ=60)

                                                               CTGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCG                                <  SRR4302537.6171511/94‑1 (MQ=60)

                                                                TGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGC                               >  SRR4302537.5963/1‑94 (MQ=60)

                                                                TGGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGC                               >  SRR4302537.3273069/1‑94 (MQ=60)

                                                                 GGCCGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCT                              <  SRR4302537.1886183/94‑1 (MQ=60)

                                                                    CGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTA                           >  SRR4302537.1610094/1‑94 (MQ=60)

                                                                    CGGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTA                           <  SRR4302537.2658453/94‑1 (MQ=60)

                                                                     GGCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAA                          >  SRR4302537.992934/1‑94 (MQ=60)

                                                                      GCTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAA                         <  SRR4302537.6122486/94‑1 (MQ=60)

                                                                       CTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAAC                        >  SRR4302537.3414872/1‑94 (MQ=60)

                                                                       CTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAAC                        <  SRR4302537.790729/94‑1 (MQ=60)

                                                                       CTTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAAC                        <  SRR4302537.809669/94‑1 (MQ=60)

                                                                        TTTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACG                       <  SRR4302537.1724071/94‑1 (MQ=60)

                                                                         TTATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGG                      >  SRR4302537.4916293/1‑94 (MQ=60)

                                                                          TATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGA                     <  SRR4302537.6294465/94‑1 (MQ=60)

                                                                           ATCGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGAT                    >  SRR4302537.4683550/1‑94 (MQ=60)

                                                                             CGGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAG                  <  SRR4302537.3455947/94‑1 (MQ=60)

                                                                              GGTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGC                 <  SRR4302537.1173913/94‑1 (MQ=60)

                                                                               GTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCA                >  SRR4302537.4317033/1‑94 (MQ=60)

                                                                               GTAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCA                <  SRR4302537.4402547/94‑1 (MQ=60)

                                                                                TAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCAC               >  SRR4302537.4510947/1‑94 (MQ=60)

                                                                                TAATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCAC               >  SRR4302537.5376202/1‑94 (MQ=60)

                                                                                 AATTTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACC              >  SRR4302537.829521/1‑94 (MQ=60)

                                                                                  ATTTCTGCGGCACACTCTTTTTCAAAGCCCGGAAGGCACAGCAATACAACCGTATTCATGACTTACTCCCTTGCGCTTTAAACGGATAGCACTA             >  SRR4302537.3124736/1‑94 (MQ=60)

                                                                                    TTCTGCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAAC           >  SRR4302537.4707601/1‑94 (MQ=60)

                                                                                        GCGGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAAC       >  SRR4302537.5219118/1‑94 (MQ=60)

                                                                                          GGCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACAT     <  SRR4302537.5719793/94‑1 (MQ=60)

                                                                                           GCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAGCCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATT    <  SRR4302537.2034686/94‑1 (MQ=60)

                                                                                           GCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATT    <  SRR4302537.1905829/94‑1 (MQ=60)

                                                                                           GCACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATT    <  SRR4302537.3566767/94‑1 (MQ=60)

                                                                                            CACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATTA   <  SRR4302537.779202/94‑1 (MQ=60)

                                                                                            CACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATTA   <  SRR4302537.276108/94‑1 (MQ=60)

                                                                                             ACACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATTAA  >  SRR4302537.4051069/1‑94 (MQ=60)

ATAACATTCATAAATGACATAACCCGCATTCTCTTTCACGCGGGCAAAACCGAAAATTTCCCGCTGGCCGGCTTTATCGGTAATTTCTGCGGCGCACTCTTTTTCAAAGCCCGGACGGCACAGCAATACAACCTTATTCATGACTTACGCCCTTGCGCTTTAAACGGATAGCACCAACTAACATTAA  >  NC_000913/2939125‑2939311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`