Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,963,192	C→T	V290I (GTT→ATT)	lgt ←	phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,963,192	0	C	T	99.6%	937.1 / NA	264	V290I (GTT→ATT)	lgt	phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (132/131); minor base G (0/1); total (132/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 269 total aligned reads displayed.

TTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGA  >  NC_000913/2963102‑2963281

ttccggttccggTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATgt                                                                                         >  2:393857/1‑93 (MQ=255)

ttccggttccggTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATgt                                                                                         <  1:689523/93‑1 (MQ=255)

 tccggtgccggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGAACTATTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAAtgtg                                                                                        <  2:813136/93‑1 (MQ=255)

  ccggttccggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATgtgt                                                                                       <  1:4058700/93‑1 (MQ=255)

   cggttccggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGtt                                                                                      >  1:3075456/1‑93 (MQ=255)

      ttccggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCt                                                                                   <  2:5623441/93‑1 (MQ=255)

      ttccggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCt                                                                                   >  2:4032604/1‑93 (MQ=255)

         cggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCtgtg                                                                                >  1:4235763/1‑93 (MQ=255)

         cggtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCtgtg                                                                                <  2:1005279/93‑1 (MQ=255)

           gtACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTggg                                                                              <  2:3855227/93‑1 (MQ=255)

            ttcGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGc                                                                             <  2:3691438/91‑1 (MQ=255)

             aCGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCt                                                                            <  2:3235923/93‑1 (MQ=255)

             aCGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCt                                                                            <  2:1794252/93‑1 (MQ=255)

                gTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGcg                                                                         >  2:6024262/1‑93 (MQ=255)

                gTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGcg                                                                         >  2:5773203/1‑93 (MQ=255)

                  cGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGcgac                                                                       <  1:5599866/93‑1 (MQ=255)

                    tttttCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGcgacga                                                                     <  1:6435368/93‑1 (MQ=255)

                    tttttCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGcgacga                                                                     >  2:3693803/1‑93 (MQ=255)

                      tttCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGata                                                                   >  2:5278541/1‑93 (MQ=255)

                      tttCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGata                                                                   <  2:5165590/93‑1 (MQ=255)

                       ttCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGatat                                                                  >  2:715883/1‑93 (MQ=255)

                        tCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATg                                                                 <  2:4895846/93‑1 (MQ=255)

                        tCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATg                                                                 >  1:4833184/1‑93 (MQ=255)

                         cTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGc                                                                <  2:245437/93‑1 (MQ=255)

                           gtgtgCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGccc                                                              >  1:5854871/1‑93 (MQ=255)

                            tgtgCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCa                                                             <  2:1836097/93‑1 (MQ=255)

                             gtgCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAg                                                            <  1:1974287/93‑1 (MQ=255)

                              tgCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGa                                                           >  1:5924867/1‑93 (MQ=255)

                               gCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGAc                                                          <  2:4794659/93‑1 (MQ=255)

                                 cTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACca                                                        >  1:3763285/1‑93 (MQ=255)

                                 cTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACca                                                        >  1:5058854/1‑93 (MQ=255)

                                  ttCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACcat                                                       >  2:3427181/1‑93 (MQ=255)

                                  ttCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACcat                                                       <  2:4929534/93‑1 (MQ=255)

                                  ttCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACcat                                                       >  2:4884328/1‑93 (MQ=255)

                                   tcgtcgAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACcatc                                                      <  1:1739064/93‑1 (MQ=255)

                                       cgAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGa                                                  <  1:6061377/93‑1 (MQ=255)

                                        gAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAt                                                 >  1:346216/1‑93 (MQ=255)

                                        gAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAt                                                 <  2:2132322/93‑1 (MQ=255)

                                        gAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAt                                                 >  2:199699/1‑93 (MQ=255)

                                        gAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAt                                                 >  1:5256163/1‑93 (MQ=255)

                                        gAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCAAGAt                                                 <  2:900609/93‑1 (MQ=255)

                                         aGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATc                                                <  1:1024390/93‑1 (MQ=255)

                                         aGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATc                                                <  1:6465315/93‑1 (MQ=255)

                                         aGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATc                                                >  1:2345489/1‑93 (MQ=255)

                                           cACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATcgc                                              <  1:3142287/93‑3 (MQ=255)

                                           cACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTATGGGCTGCGACGATATGCCCAGACCATCATGATcga                                              >  1:5317852/1‑91 (MQ=255)

                                             cTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCgcac                                            >  2:5044232/1‑93 (MQ=255)

                                             cTTGTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCgcac                                            <  1:5819274/93‑1 (MQ=255)

                                              tttttGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCAcc                                           >  2:603489/1‑93 (MQ=255)

                                              tttttGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCAcc                                           >  1:2060543/1‑93 (MQ=255)

                                                tttGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCcg                                         >  1:4680461/1‑93 (MQ=255)

                                                   gCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGa                                      <  1:5405273/93‑1 (MQ=255)

                                                   gCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGa                                      >  1:6219073/1‑93 (MQ=255)

                                                    cATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGAc                                     >  1:2840808/1‑93 (MQ=255)

                                                      tCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACaa                                   <  2:2650759/93‑1 (MQ=255)

                                                       cAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAat                                  <  2:1611543/93‑1 (MQ=255)

                                                       cAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAat                                  <  2:4642811/93‑1 (MQ=255)

                                                       cAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCAGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAat                                  <  2:6383060/93‑1 (MQ=255)

                                                          ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                               <  2:4185971/93‑1 (MQ=255)

                                                          ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                               <  1:4153505/93‑1 (MQ=255)

                                                          ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                               >  1:4993448/1‑93 (MQ=255)

                                                           tCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcatc                              >  2:2037864/1‑93 (MQ=255)

                                                           tCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcatc                              >  1:1521057/1‑93 (MQ=255)

                                                           tCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcatc                              <  2:6107882/93‑1 (MQ=255)

                                                            cTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCg                             <  1:1813427/93‑1 (MQ=255)

                                                            cTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCg                             >  1:4881910/1‑93 (MQ=255)

                                                             tAAATACTGTTTCATTGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgg                            >  1:1065993/1‑93 (MQ=255)

                                                             tAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgg                            >  2:5915322/1‑93 (MQ=255)

                                                             tAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgg                            <  2:877299/93‑1 (MQ=255)

                                                              aaaTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCggg                           <  2:1262447/93‑1 (MQ=255)

                                                               aaTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGa                          <  2:2907500/93‑1 (MQ=255)

                                                               aaTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGa                          <  1:3265115/93‑1 (MQ=255)

                                                                aTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAt                         <  1:2963370/93‑1 (MQ=255)

                                                                 tACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATg                        >  1:6015594/1‑93 (MQ=255)

                                                                  aCTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATgg                       >  2:2758953/1‑93 (MQ=255)

                                                                     ttttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGaaa                    <  2:4163293/92‑1 (MQ=255)

                                                                     gTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGaaa                    <  1:3663648/93‑1 (MQ=255)

                                                                      tttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAg                   >  1:2131024/1‑93 (MQ=255)

                                                                      tttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAg                   >  2:2347826/1‑93 (MQ=255)

                                                                       ttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGa                  <  2:4494929/93‑1 (MQ=255)

                                                                       ttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGa                  >  2:2713125/1‑93 (MQ=255)

                                                                       ttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGa                  <  1:3402625/93‑1 (MQ=255)

                                                                        tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCCTCGGGATGGAAAGaa                 >  2:1404350/1‑93 (MQ=255)

                                                                        tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                 <  1:4201005/93‑1 (MQ=255)

                                                                        tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                 <  2:3147059/93‑1 (MQ=255)

                                                                         cATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAt                <  1:4128343/93‑1 (MQ=255)

                                                                         cATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAt                >  2:5472596/1‑93 (MQ=255)

                                                                         cATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAt                >  1:4522863/1‑93 (MQ=255)

                                                                          aTGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAtt               >  1:2872441/1‑93 (MQ=255)

                                                                          aTGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAtt               >  2:6228362/1‑93 (MQ=255)

                                                                          aTGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAGCATCGGGATGCAAAGAAtt               <  2:6326942/93‑1 (MQ=255)

                                                                          aTGGCTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAtt               >  1:1405216/1‑93 (MQ=255)

                                                                           tGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAttt              <  1:3864476/93‑1 (MQ=255)

                                                                            ggTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTg             >  2:1470172/1‑93 (MQ=255)

                                                                             gTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGc            >  1:1853739/1‑93 (MQ=255)

                                                                                 cTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCa        <  1:4408683/93‑1 (MQ=255)

                                                                                 cTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCa        >  1:751159/1‑93 (MQ=255)

                                                                                  tCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCAt       <  1:2756948/93‑1 (MQ=255)

                                                                                  tCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCAt       >  1:1265963/1‑93 (MQ=255)

                                                                                       aaaTGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGa  <  1:4776070/93‑1 (MQ=255)

TTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGA  >  NC_000913/2963102‑2963281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGTTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT  >  NC_000913/2963100‑2963282

CGTTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATG                                                                                            >  SRR4302537.2353637/1‑94 (MQ=60)

CGTTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATG                                                                                            <  SRR4302537.5132451/94‑1 (MQ=60)

 GTTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGT                                                                                           >  SRR4302537.1767871/1‑94 (MQ=60)

  TTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTG                                                                                          <  SRR4302537.694248/94‑1 (MQ=60)

  TTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTG                                                                                          <  SRR4302537.5552644/94‑1 (MQ=60)

  TTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTG                                                                                          <  SRR4302537.1778075/94‑1 (MQ=60)

   TCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGT                                                                                         <  SRR4302537.4304537/94‑1 (MQ=60)

    CCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTT                                                                                        >  SRR4302537.3096881/1‑94 (MQ=60)

    CCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTT                                                                                        <  SRR4302537.4087065/94‑1 (MQ=60)

    CCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTT                                                                                        <  SRR4302537.1096710/94‑1 (MQ=60)

       GTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCT                                                                                     <  SRR4302537.1161897/94‑1 (MQ=60)

       GTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCT                                                                                     <  SRR4302537.4516402/94‑1 (MQ=60)

          CCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTG                                                                                  <  SRR4302537.5162382/94‑1 (MQ=60)

          CCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTG                                                                                  >  SRR4302537.4265231/1‑94 (MQ=60)

          CCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTG                                                                                  <  SRR4302537.5302772/94‑1 (MQ=60)

           CGGTACGGTCGTTTTTCTGTGTGCATTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGG                                                                                 <  SRR4302537.394043/94‑1 (MQ=60)

            GGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGG                                                                                >  SRR4302537.4871948/1‑94 (MQ=60)

             GTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGC                                                                               >  SRR4302537.714442/1‑94 (MQ=60)

             GTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGC                                                                               <  SRR4302537.2268519/94‑1 (MQ=60)

              TACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCT                                                                              <  SRR4302537.1301957/94‑1 (MQ=60)

               ACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTG                                                                             >  SRR4302537.5888375/1‑94 (MQ=60)

                   TCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGAC                                                                         <  SRR4302537.4224196/94‑1 (MQ=60)

                    CGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACG                                                                        >  SRR4302537.992917/1‑94 (MQ=60)

                    CGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACG                                                                        >  SRR4302537.3332479/1‑94 (MQ=60)

                    CGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACG                                                                        <  SRR4302537.5638148/94‑1 (MQ=60)

                      TTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGAT                                                                      <  SRR4302537.6479064/94‑1 (MQ=60)

                         TTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATG                                                                   >  SRR4302537.510915/1‑94 (MQ=60)

                         TTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATG                                                                   >  SRR4302537.4866557/1‑94 (MQ=60)

                         TTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATG                                                                   <  SRR4302537.4157251/94‑1 (MQ=60)

                         TTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATG                                                                   <  SRR4302537.196677/94‑1 (MQ=60)

                           CTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCC                                                                 <  SRR4302537.5023516/94‑1 (MQ=60)

                           CTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCC                                                                 <  SRR4302537.5942394/94‑1 (MQ=60)

                           CTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCC                                                                 <  SRR4302537.640152/94‑1 (MQ=60)

                           CTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCC                                                                 >  SRR4302537.2881593/1‑94 (MQ=60)

                            TGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCC                                                                >  SRR4302537.5895030/1‑94 (MQ=60)

                             GTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCA                                                               >  SRR4302537.3248781/1‑94 (MQ=60)

                              TGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAG                                                              >  SRR4302537.1867520/1‑94 (MQ=60)

                               GTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGA                                                             <  SRR4302537.1988010/94‑1 (MQ=60)

                               GTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGA                                                             >  SRR4302537.5965525/1‑94 (MQ=60)

                                  CCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCA                                                          >  SRR4302537.3789711/1‑94 (MQ=60)

                                  CCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCA                                                          >  SRR4302537.5093678/1‑94 (MQ=60)

                                   CTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCAT                                                         <  SRR4302537.3934986/94‑1 (MQ=60)

                                     TCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCA                                                       <  SRR4302537.1751189/94‑1 (MQ=60)

                                      CGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCAT                                                      >  SRR4302537.6001095/1‑94 (MQ=60)

                                       GTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATG                                                     >  SRR4302537.502738/1‑94 (MQ=60)

                                       GTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATG                                                     <  SRR4302537.1049361/94‑1 (MQ=60)

                                         CGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAT                                                   <  SRR4302537.6103022/94‑1 (MQ=60)

                                         CGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAT                                                   >  SRR4302537.1622807/1‑94 (MQ=60)

                                         CGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAT                                                   >  SRR4302537.348622/1‑94 (MQ=60)

                                         CGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGAT                                                   >  SRR4302537.5292331/1‑94 (MQ=60)

                                          GAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATC                                                  >  SRR4302537.6415431/1‑94 (MQ=60)

                                          GAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATC                                                  >  SRR4302537.6100039/1‑94 (MQ=60)

                                          GAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATC                                                  >  SRR4302537.2362003/1‑94 (MQ=60)

                                           AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                 <  SRR4302537.1031438/94‑1 (MQ=60)

                                           AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                 <  SRR4302537.6509108/94‑1 (MQ=60)

                                           AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                 >  SRR4302537.6496694/1‑94 (MQ=60)

                                           AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                 <  SRR4302537.1866500/94‑1 (MQ=60)

                                           AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                 >  SRR4302537.2694147/1‑94 (MQ=60)

                                            GCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGC                                                >  SRR4302537.6491154/1‑94 (MQ=60)

                                            GCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTATGGGCTGCGACGATATGCCCAGACCATCATGATCga                                                >  SRR4302537.5354362/1‑92 (MQ=60)

                                             CACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCA                                               <  SRR4302537.3164341/94‑1 (MQ=60)

                                             CACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCA                                               >  SRR4302537.2053479/1‑94 (MQ=60)

                                              ACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCAC                                              <  SRR4302537.5956976/94‑1 (MQ=60)

                                              ACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCAC                                              <  SRR4302537.3651722/94‑1 (MQ=60)

                                               CTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACC                                             >  SRR4302537.2075010/1‑94 (MQ=60)

                                               CTTGTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACC                                             <  SRR4302537.5859156/94‑1 (MQ=60)

                                                 TTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCG                                           >  SRR4302537.4712840/1‑94 (MQ=60)

                                                 TTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCAG                                           >  SRR4302537.4617395/1‑94 (MQ=60)

                                                    TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGA                                        >  SRR4302537.6261891/1‑94 (MQ=60)

                                                    TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGA                                        <  SRR4302537.550811/94‑1 (MQ=60)

                                                    TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGA                                        >  SRR4302537.4867851/1‑94 (MQ=60)

                                                    TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACAATCATGATCGCACCCGCGA                                        >  SRR4302537.4275701/1‑94 (MQ=60)

                                                     GCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGAC                                       >  SRR4302537.2860689/1‑94 (MQ=60)

                                                     GCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGAC                                       <  SRR4302537.5442148/94‑1 (MQ=60)

                                                     GCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGAC                                       >  SRR4302537.2860688/1‑94 (MQ=60)

                                                      CATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACA                                      <  SRR4302537.3843405/94‑1 (MQ=60)

                                                       ATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAA                                     >  SRR4302537.4781605/1‑94 (MQ=60)

                                                        TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGACAAT                                    <  SRR4302537.2533559/94‑1 (MQ=60)

                                                        TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACGCGCGACAAT                                    >  SRR4302537.2345234/1‑94 (MQ=60)

                                                        TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAT                                    <  SRR4302537.5838573/94‑1 (MQ=60)

                                                        TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAT                                    <  SRR4302537.6132827/94‑1 (MQ=60)

                                                        TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAAGGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAT                                    <  SRR4302537.506104/94‑1 (MQ=60)

                                                         CAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATC                                   >  SRR4302537.5359005/1‑94 (MQ=60)

                                                          AGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCA                                  >  SRR4302537.4231962/1‑94 (MQ=60)

                                                          AGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCA                                  >  SRR4302537.4854462/1‑94 (MQ=60)

                                                           GTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCAT                                 >  SRR4302537.4194017/1‑94 (MQ=60)

                                                           GTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCAT                                 >  SRR4302537.5027855/1‑94 (MQ=60)

                                                            TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                <  SRR4302537.4640692/94‑1 (MQ=60)

                                                            TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                <  SRR4302537.4123935/94‑1 (MQ=60)

                                                            TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                >  SRR4302537.1531680/1‑94 (MQ=60)

                                                            TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                <  SRR4302537.4182506/94‑1 (MQ=60)

                                                             TCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCG                               >  SRR4302537.4915632/1‑94 (MQ=60)

                                                             TCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCG                               <  SRR4302537.4131144/94‑1 (MQ=60)

                                                              CTAAATACTGTTTCATTGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGG                              >  SRR4302537.1073337/1‑94 (MQ=60)

                                                              CTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGG                              <  SRR4302537.1826069/94‑1 (MQ=60)

                                                              CTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGG                              >  SRR4302537.6049553/1‑94 (MQ=60)

                                                               TAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGG                             <  SRR4302537.3182692/94‑1 (MQ=60)

                                                                AAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGA                            >  SRR4302537.6091795/1‑94 (MQ=60)

                                                                 AATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT                           <  SRR4302537.3288146/94‑1 (MQ=60)

                                                                 AATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT                           <  SRR4302537.5774142/94‑1 (MQ=60)

                                                                  ATACTGTTTCATGGTTCCTCAGGAACTGTGTTACTGTCGGCTGCAACGATACGCCCAGACCATCATGATCGCTCCCGCGACAATCATCGGGAT‑G                         <  SRR4302537.3938538/94‑1 (MQ=60)

                                                                  ATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑G                         <  SRR4302537.2984169/94‑1 (MQ=60)

                                                                  ATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑G                         >  SRR4302537.1345439/1‑94 (MQ=60)

                                                                  ATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑G                         >  SRR4302537.6056926/1‑94 (MQ=60)

                                                                   TACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GG                        <  SRR4302537.3151058/94‑1 (MQ=60)

                                                                     CTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATCGGA                       >  SRR4302537.3690220/1‑94 (MQ=60)

                                                                       GTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAG                    <  SRR4302537.3689433/94‑1 (MQ=60)

                                                                       GTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAG                    >  SRR4302537.2146019/1‑94 (MQ=60)

                                                                         TTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAA                  >  SRR4302537.2940582/1‑94 (MQ=60)

                                                                         TTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAA                  <  SRR4302537.3426729/94‑1 (MQ=60)

                                                                         TTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAA                  >  SRR4302537.2144827/1‑94 (MQ=60)

                                                                          TCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAAT                 <  SRR4302537.4230334/94‑1 (MQ=60)

                                                                          TCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAAT                 >  SRR4302537.4554155/1‑94 (MQ=60)

                                                                          TCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAAT                 <  SRR4302537.2040666/94‑1 (MQ=60)

                                                                           CATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATT                <  SRR4302537.4157157/94‑1 (MQ=60)

                                                                           CATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATT                >  SRR4302537.2892599/1‑94 (MQ=60)

                                                                           CATGGCTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATT                >  SRR4302537.1415003/1‑94 (MQ=60)

                                                                             TGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTG              <  SRR4302537.705942/94‑1 (MQ=60)

                                                                             TGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTG              <  SRR4302537.3891528/94‑1 (MQ=60)

                                                                              GGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGC             >  SRR4302537.1866629/1‑94 (MQ=60)

                                                                                TTCCTCAGTAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCC           >  SRR4302537.4800313/1‑94 (MQ=60)

                                                                                TTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCC           <  SRR4302537.1603780/94‑1 (MQ=60)

                                                                                TTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCC           <  SRR4302537.667832/94‑1 (MQ=60)

                                                                                 TCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCC          <  SRR4302537.5306099/94‑1 (MQ=60)

                                                                                 TCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCC          >  SRR4302537.293683/1‑94 (MQ=60)

                                                                                  CCTCAGTAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA         >  SRR4302537.3000231/1‑94 (MQ=60)

                                                                                  CCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA         >  SRR4302537.3708682/1‑94 (MQ=60)

                                                                                  CCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA         >  SRR4302537.893740/1‑94 (MQ=60)

                                                                                  CCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA         >  SRR4302537.756280/1‑94 (MQ=60)

                                                                                   CTCAGGAAATGTGTTGCTGTGGGCTGCGTCGATATGCCCAGACCATCATGATCGCACCCGCGGCAATCATCGGGGT‑GGAGAGAATTTGCCCCAT        >  SRR4302537.3389241/1‑94 (MQ=60)

                                                                                   CTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCAT        <  SRR4302537.4439107/94‑1 (MQ=60)

                                                                                   CTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCAT        >  SRR4302537.1274768/1‑94 (MQ=60)

                                                                                    TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG       <  SRR4302537.2776191/94‑1 (MQ=60)

                                                                                    TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG       <  SRR4302537.3458838/94‑1 (MQ=60)

                                                                                    TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG       <  SRR4302537.299630/94‑1 (MQ=60)

                                                                                    TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG       >  SRR4302537.359232/1‑94 (MQ=60)

                                                                                      AGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCT     >  SRR4302537.2842187/1‑94 (MQ=60)

                                                                                      AGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCT     >  SRR4302537.1429848/1‑94 (MQ=60)

                                                                                         AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT  >  SRR4302537.3050870/1‑94 (MQ=60)

                                                                                         AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT  >  SRR4302537.3192117/1‑94 (MQ=60)

                                                                                         AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT  <  SRR4302537.4809042/94‑1 (MQ=60)

                                                                                         AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT  <  SRR4302537.423279/94‑1 (MQ=60)

CGTTCCGGTTCCGGTACGGTCGTTTTTCTGTGTGCCTTCGTCGAGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT  >  NC_000913/2963100‑2963282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`