Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,963,236 A→G V275A (GTG→GCG)  lgt ← phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,963,2360AG100.0% 839.0 / NA 243V275A (GTG→GCG) lgtphosphatidylglycerol‑prolipoprotein diacylglyceryl transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (118/125);  total (118/125)

Only 100 of 260 total aligned reads displayed.

ACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGG  >  NC_000913/2963146‑2963325
                                                                                          |                                                                                         
aCTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATcgca                                                                                         <  1:3626160/93‑1 (MQ=255)
 cTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCgcac                                                                                        <  2:5932528/93‑1 (MQ=255)
     ttGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCcgc                                                                                    >  2:4099069/1‑93 (MQ=255)
       gCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGa                                                                                  >  1:6219073/1‑93 (MQ=255)
        cATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGAc                                                                                 >  1:2840809/1‑93 (MQ=255)
          tCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGACaa                                                                               <  1:2515880/93‑1 (MQ=255)
          tCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACaa                                                                               <  1:5798818/93‑1 (MQ=255)
          tCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAAGGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACaa                                                                               <  1:502649/93‑1 (MQ=255)
           cAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAat                                                                              <  2:1611543/93‑1 (MQ=255)
             gTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatca                                                                            >  1:4821162/1‑93 (MQ=255)
              ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                                                                           <  2:839388/93‑1 (MQ=255)
              ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                                                                           <  2:4185971/93‑1 (MQ=255)
              ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                                                                           <  1:4153505/93‑1 (MQ=255)
              ttCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcat                                                                           <  1:4095339/93‑1 (MQ=255)
               tCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAatcatc                                                                          >  2:1188459/1‑93 (MQ=255)
               tCTAAATACGGGTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGGCGATGTGCCCAGAGCATCATGATCGGACCCGCGGCAatcatg                                                                          >  2:1318317/1‑92 (MQ=255)
                cTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCg                                                                         >  1:4881910/1‑93 (MQ=255)
                 tAAATACTGTTTCATTGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgg                                                                        >  1:1065993/1‑93 (MQ=255)
                 tAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgg                                                                        <  1:3160507/93‑1 (MQ=255)
                 tAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgg                                                                        >  2:6190503/1‑93 (MQ=255)
                   aaTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGTGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCgggt                                                                      >  2:2346071/1‑92 (MQ=255)
                   aaTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGa                                                                      <  1:3265115/93‑1 (MQ=255)
                    aTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAt                                                                     >  2:5625847/1‑93 (MQ=255)
                    aTACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAt                                                                     >  2:3735661/1‑93 (MQ=255)
                     tACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATg                                                                    >  1:6015594/1‑93 (MQ=255)
                     tACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATg                                                                    <  2:2480132/93‑1 (MQ=255)
                     tACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATg                                                                    <  2:5882558/93‑1 (MQ=255)
                        tGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGaa                                                                 >  2:4914755/1‑93 (MQ=255)
                         gTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGaaa                                                                <  1:3663648/93‑1 (MQ=255)
                           ttCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGa                                                              <  1:3402625/93‑1 (MQ=255)
                            tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                                                             >  1:2920058/1‑93 (MQ=255)
                            tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                                                             <  1:2026531/93‑1 (MQ=255)
                            tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                                                             <  1:4201005/93‑1 (MQ=255)
                            tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                                                             <  2:3147059/93‑1 (MQ=255)
                            tCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGaa                                                             >  1:2129843/1‑93 (MQ=255)
                             cATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAt                                                            >  2:5472596/1‑93 (MQ=255)
                             cATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAt                                                            >  1:4522863/1‑93 (MQ=255)
                              aTGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAtt                                                           <  2:6349243/93‑1 (MQ=255)
                              aTGGCTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAtt                                                           >  1:1405216/1‑93 (MQ=255)
                               tGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAttt                                                          <  1:3864476/93‑1 (MQ=255)
                               tGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAAttt                                                          <  1:701146/93‑1 (MQ=255)
                                  ttCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGcc                                                       <  1:1592649/93‑1 (MQ=255)
                                   tCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGccc                                                      <  1:5269834/93‑1 (MQ=255)
                                     cTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCa                                                    <  1:4408683/93‑1 (MQ=255)
                                     cTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCa                                                    >  1:3682783/1‑93 (MQ=255)
                                      tCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCAt                                                   >  2:778244/1‑93 (MQ=255)
                                      tCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCAt                                                   >  1:1265963/1‑93 (MQ=255)
                                       cAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATg                                                  <  2:2928330/93‑1 (MQ=255)
                                         ggAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCt                                                >  1:2822458/1‑93 (MQ=255)
                                          gAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTg                                               >  2:2987710/1‑93 (MQ=255)
                                           aaaTGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGa                                              >  2:2652097/1‑93 (MQ=255)
                                           aaaTGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGa                                              <  1:420366/93‑1 (MQ=255)
                                           aaaTGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGa                                              <  2:1450138/93‑1 (MQ=255)
                                            aatgtgtTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGAt                                             >  1:3029746/4‑93 (MQ=255)
                                             atgtgtTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATg                                            >  2:4630479/3‑93 (MQ=255)
                                              tgtgtTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGt                                           >  2:2736854/2‑93 (MQ=255)
                                                  ttGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTg                                       <  2:5355950/93‑1 (MQ=255)
                                                  ttGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTg                                       >  2:702316/1‑93 (MQ=255)
                                                   tGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGc                                      >  2:5220029/1‑93 (MQ=255)
                                                      tgtgGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCAcc                                   >  2:191638/1‑93 (MQ=255)
                                                      tgtgGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCAcc                                   <  2:2774139/93‑1 (MQ=255)
                                                      tgtgGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCAcc                                   >  1:999931/1‑93 (MQ=255)
                                                       gtgGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCAccc                                  <  2:4645825/93‑1 (MQ=255)
                                                        tgGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGTATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCa                                 <  1:1835844/93‑1 (MQ=255)
                                                        tgGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCa                                 <  1:848874/93‑1 (MQ=255)
                                                          ggCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAgg                               <  1:4774060/93‑1 (MQ=255)
                                                          ggCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAgg                               <  2:3314719/93‑1 (MQ=255)
                                                            cTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCa                             <  1:5689007/93‑1 (MQ=255)
                                                             tGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCAc                            <  1:5482660/93‑1 (MQ=255)
                                                                 acgaTATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGt                        <  1:539144/93‑1 (MQ=255)
                                                                  cgaTATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTa                       <  1:6466950/93‑1 (MQ=255)
                                                                   gaTATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTaa                      <  2:3189931/93‑1 (MQ=255)
                                                                   gaTATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTaa                      <  2:428282/93‑1 (MQ=255)
                                                                    atatGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTaaa                     <  1:3565763/93‑1 (MQ=255)
                                                                    atatGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTaaa                     <  2:1958661/93‑1 (MQ=255)
                                                                      atGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACt                   <  1:468076/93‑1 (MQ=255)
                                                                        gCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTgc                 <  2:2118864/93‑1 (MQ=255)
                                                                         cccAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTgcg                >  2:3708650/1‑93 (MQ=255)
                                                                          ccAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTgcgc               >  1:2975420/1‑93 (MQ=255)
                                                                           cAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGcgcg              <  1:1431868/93‑1 (MQ=255)
                                                                           cAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGcgcg              <  1:5621691/93‑1 (MQ=255)
                                                                           cAGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGcgcg              >  2:2289234/1‑93 (MQ=255)
                                                                            aGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGt             <  1:4628154/93‑1 (MQ=255)
                                                                            aGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGt             <  2:6417817/93‑1 (MQ=255)
                                                                            aGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGt             <  2:422118/93‑1 (MQ=255)
                                                                            aGACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGATGATGTACTGCACCCAGGCACCGGTAAACTGCGCGt             >  2:1110570/1‑93 (MQ=255)
                                                                             gACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTc            >  1:5402372/1‑93 (MQ=255)
                                                                             gACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTc            <  2:242156/93‑1 (MQ=255)
                                                                             gACCATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTc            <  2:1069005/93‑1 (MQ=255)
                                                                               ccATCATGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCgg          <  2:5785830/93‑1 (MQ=255)
                                                                                 atcatGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGc        >  1:4436376/1‑93 (MQ=255)
                                                                                  tcatGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCt       <  2:4028629/93‑1 (MQ=255)
                                                                                  tcatGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCt       >  2:4830417/1‑93 (MQ=255)
                                                                                  tcatGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCt       <  1:2258687/93‑1 (MQ=255)
                                                                                   catGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTg      >  2:3903764/1‑93 (MQ=255)
                                                                                     tGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGc    <  2:6274644/93‑1 (MQ=255)
                                                                                     tGATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGc    >  1:724253/1‑93 (MQ=255)
                                                                                      gATCGCACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCg   >  2:6102374/1‑93 (MQ=255)
                                                                                      gATCGCACCAGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCg   <  1:5853936/93‑1 (MQ=255)
                                                                                       aTCGCACCCGCGACAATCATCGGGATGGAAAGAATTTTCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCgg  >  2:5710356/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGATGGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGG  >  NC_000913/2963146‑2963325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGGAAAA  >  NC_000913/2963143‑2963329
                                                                                             |                                                                                              
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                                                                <  SRR4302537.1031438/94‑1 (MQ=60)
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                                                                >  SRR4302537.2694147/1‑94 (MQ=60)
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                                                                <  SRR4302537.1866500/94‑1 (MQ=60)
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                                                                >  SRR4302537.6496694/1‑94 (MQ=60)
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCG                                                                                                <  SRR4302537.6509108/94‑1 (MQ=60)
 GCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGC                                                                                               >  SRR4302537.6491154/1‑94 (MQ=60)
  CACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCA                                                                                              >  SRR4302537.2053479/1‑94 (MQ=60)
  CACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCA                                                                                              <  SRR4302537.3164341/94‑1 (MQ=60)
   ACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCAC                                                                                             <  SRR4302537.3651722/94‑1 (MQ=60)
   ACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCAC                                                                                             <  SRR4302537.5956976/94‑1 (MQ=60)
    CTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACC                                                                                            >  SRR4302537.2075010/1‑94 (MQ=60)
    CTTGTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACC                                                                                            <  SRR4302537.5859156/94‑1 (MQ=60)
      TTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCG                                                                                          >  SRR4302537.4712840/1‑94 (MQ=60)
      TTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCAG                                                                                          >  SRR4302537.4617395/1‑94 (MQ=60)
         TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGA                                                                                       <  SRR4302537.550811/94‑1 (MQ=60)
         TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGA                                                                                       >  SRR4302537.6261891/1‑94 (MQ=60)
         TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGA                                                                                       >  SRR4302537.4867851/1‑94 (MQ=60)
         TGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACAATCATGATCGCACCCGCGA                                                                                       >  SRR4302537.4275701/1‑94 (MQ=60)
          GCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGAC                                                                                      >  SRR4302537.2860689/1‑94 (MQ=60)
          GCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGAC                                                                                      <  SRR4302537.5442148/94‑1 (MQ=60)
          GCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGAC                                                                                      >  SRR4302537.2860688/1‑94 (MQ=60)
           CATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACA                                                                                     <  SRR4302537.3843405/94‑1 (MQ=60)
            ATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAA                                                                                    >  SRR4302537.4781605/1‑94 (MQ=60)
             TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGACAAT                                                                                   <  SRR4302537.2533559/94‑1 (MQ=60)
             TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACGCGCGACAAT                                                                                   >  SRR4302537.2345234/1‑94 (MQ=60)
             TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAT                                                                                   <  SRR4302537.5838573/94‑1 (MQ=60)
             TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAT                                                                                   <  SRR4302537.6132827/94‑1 (MQ=60)
             TCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAAGGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAAT                                                                                   <  SRR4302537.506104/94‑1 (MQ=60)
              CAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATC                                                                                  >  SRR4302537.5359005/1‑94 (MQ=60)
               AGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCA                                                                                 >  SRR4302537.4231962/1‑94 (MQ=60)
               AGTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCA                                                                                 >  SRR4302537.4854462/1‑94 (MQ=60)
                GTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCAT                                                                                >  SRR4302537.5027855/1‑94 (MQ=60)
                GTTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCAT                                                                                >  SRR4302537.4194017/1‑94 (MQ=60)
                 TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                                                               <  SRR4302537.4182506/94‑1 (MQ=60)
                 TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                                                               <  SRR4302537.4123935/94‑1 (MQ=60)
                 TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                                                               >  SRR4302537.1531680/1‑94 (MQ=60)
                 TTCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATC                                                                               <  SRR4302537.4640692/94‑1 (MQ=60)
                  TCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCG                                                                              >  SRR4302537.4915632/1‑94 (MQ=60)
                  TCTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCG                                                                              <  SRR4302537.4131144/94‑1 (MQ=60)
                   CTAAATACTGTTTCATTGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGG                                                                             >  SRR4302537.1073337/1‑94 (MQ=60)
                   CTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGG                                                                             <  SRR4302537.1826069/94‑1 (MQ=60)
                   CTAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGG                                                                             >  SRR4302537.6049553/1‑94 (MQ=60)
                    TAAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGG                                                                            <  SRR4302537.3182692/94‑1 (MQ=60)
                     AAATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGA                                                                           >  SRR4302537.6091795/1‑94 (MQ=60)
                      AATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT                                                                          <  SRR4302537.5774142/94‑1 (MQ=60)
                      AATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT                                                                          <  SRR4302537.3288146/94‑1 (MQ=60)
                       ATACTGTTTCATGGTTCCTCAGGAACTGTGTTACTGTCGGCTGCAACGATACGCCCAGACCATCATGATCGCTCCCGCGACAATCATCGGGAT‑G                                                                        <  SRR4302537.3938538/94‑1 (MQ=60)
                       ATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑G                                                                        <  SRR4302537.2984169/94‑1 (MQ=60)
                       ATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑G                                                                        >  SRR4302537.1345439/1‑94 (MQ=60)
                       ATACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑G                                                                        >  SRR4302537.6056926/1‑94 (MQ=60)
                        TACTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GG                                                                       <  SRR4302537.3151058/94‑1 (MQ=60)
                          CTGTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGATCGGA                                                                      >  SRR4302537.3690220/1‑94 (MQ=60)
                            GTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAG                                                                   >  SRR4302537.2146019/1‑94 (MQ=60)
                            GTTTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAG                                                                   <  SRR4302537.3689433/94‑1 (MQ=60)
                              TTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAA                                                                 <  SRR4302537.3426729/94‑1 (MQ=60)
                              TTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAA                                                                 >  SRR4302537.2940582/1‑94 (MQ=60)
                              TTCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAA                                                                 >  SRR4302537.2144827/1‑94 (MQ=60)
                               TCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAAT                                                                >  SRR4302537.4554155/1‑94 (MQ=60)
                               TCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAAT                                                                <  SRR4302537.4230334/94‑1 (MQ=60)
                               TCATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAAT                                                                <  SRR4302537.2040666/94‑1 (MQ=60)
                                CATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATT                                                               <  SRR4302537.4157157/94‑1 (MQ=60)
                                CATGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATT                                                               >  SRR4302537.2892599/1‑94 (MQ=60)
                                CATGGCTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATT                                                               >  SRR4302537.1415003/1‑94 (MQ=60)
                                  TGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTG                                                             <  SRR4302537.705942/94‑1 (MQ=60)
                                  TGGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTG                                                             <  SRR4302537.3891528/94‑1 (MQ=60)
                                   GGTTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGC                                                            >  SRR4302537.1866629/1‑94 (MQ=60)
                                     TTCCTCAGTAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCC                                                          >  SRR4302537.4800313/1‑94 (MQ=60)
                                     TTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCC                                                          <  SRR4302537.667832/94‑1 (MQ=60)
                                     TTCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCC                                                          <  SRR4302537.1603780/94‑1 (MQ=60)
                                      TCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCC                                                         <  SRR4302537.5306099/94‑1 (MQ=60)
                                      TCCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCC                                                         >  SRR4302537.293683/1‑94 (MQ=60)
                                       CCTCAGTAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA                                                        >  SRR4302537.3000231/1‑94 (MQ=60)
                                       CCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA                                                        >  SRR4302537.3708682/1‑94 (MQ=60)
                                       CCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA                                                        >  SRR4302537.893740/1‑94 (MQ=60)
                                       CCTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCA                                                        >  SRR4302537.756280/1‑94 (MQ=60)
                                        CTCAGGAAATGTGTTGCTGTGGGCTGCGTCGATATGCCCAGACCATCATGATCGCACCCGCGGCAATCATCGGGGT‑GGAGAGAATTTGCCCCAT                                                       >  SRR4302537.3389241/1‑94 (MQ=60)
                                        CTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCAT                                                       <  SRR4302537.4439107/94‑1 (MQ=60)
                                        CTCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCAT                                                       >  SRR4302537.1274768/1‑94 (MQ=60)
                                         TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG                                                      <  SRR4302537.2776191/94‑1 (MQ=60)
                                         TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG                                                      <  SRR4302537.3458838/94‑1 (MQ=60)
                                         TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG                                                      <  SRR4302537.299630/94‑1 (MQ=60)
                                         TCAGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATG                                                      >  SRR4302537.359232/1‑94 (MQ=60)
                                           AGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCT                                                    >  SRR4302537.2842187/1‑94 (MQ=60)
                                           AGGAAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCT                                                    >  SRR4302537.1429848/1‑94 (MQ=60)
                                              AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT                                                 <  SRR4302537.423279/94‑1 (MQ=60)
                                              AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT                                                 <  SRR4302537.4809042/94‑1 (MQ=60)
                                              AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT                                                 >  SRR4302537.3050870/1‑94 (MQ=60)
                                              AAATGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGAT                                                 >  SRR4302537.3192117/1‑94 (MQ=60)
                                                  GTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTAC                                             <  SRR4302537.2580753/94‑1 (MQ=60)
                                                   TGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACT                                            <  SRR4302537.3623380/94‑1 (MQ=60)
                                                      TGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCCCCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCA                                         <  SRR4302537.335749/94‑1 (MQ=60)
                                                       TCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCAC                                        <  SRR4302537.384222/94‑1 (MQ=60)
                                                        CTGTGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACC                                       >  SRR4302537.1006830/1‑94 (MQ=60)
                                                           TGNNNNNCNACNANATGCCNCNACNATCATNANCGCACCNGNNACAATCATCGGGAN‑GNAAAGAATTTGCCNCATGCTGATGTACTGCACCCAG                                    <  SRR4302537.902765/94‑1 (MQ=53)
                                                           TGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGTAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAG                                    <  SRR4302537.1848622/94‑1 (MQ=60)
                                                           TGGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAG                                    <  SRR4302537.854690/94‑1 (MQ=60)
                                                            GGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGG                                   <  SRR4302537.5088052/94‑1 (MQ=60)
                                                            GGGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGG                                   <  SRR4302537.1360737/94‑1 (MQ=60)
                                                             GGCTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGC                                  <  SRR4302537.4807020/94‑1 (MQ=60)
                                                               CTGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCAC                                <  SRR4302537.5727920/94‑1 (MQ=60)
                                                                TGCGACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACC                               <  SRR4302537.5520091/94‑1 (MQ=60)
                                                                    ACGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTA                           <  SRR4302537.542849/94‑1 (MQ=60)
                                                                     CGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAA                          <  SRR4302537.6510763/94‑1 (MQ=60)
                                                                     CGATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAA                          >  SRR4302537.4446006/1‑94 (MQ=60)
                                                                      GATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAA                         >  SRR4302537.2392817/1‑94 (MQ=60)
                                                                       ATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAAC                        >  SRR4302537.4941208/1‑94 (MQ=60)
                                                                       ATATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAAC                        <  SRR4302537.3590908/94‑1 (MQ=60)
                                                                         ATGCCCAGACCATCATGATCGCGCCCGCGACAATCATCTGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTG                      <  SRR4302537.758818/94‑1 (MQ=60)
                                                                         ATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTG                      <  SRR4302537.5397709/94‑1 (MQ=60)
                                                                         ATGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTG                      <  SRR4302537.471289/94‑1 (MQ=60)
                                                                          TGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGC                     <  SRR4302537.661533/94‑1 (MQ=60)
                                                                          TGCCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGC                     >  SRR4302537.5742048/1‑94 (MQ=60)
                                                                            CCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGC                   >  SRR4302537.1185513/1‑94 (MQ=60)
                                                                            CCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGC                   >  SRR4302537.40575/1‑94 (MQ=60)
                                                                            CCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGC                   >  SRR4302537.2996252/1‑94 (MQ=60)
                                                                            CCCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGC                   <  SRR4302537.720775/94‑1 (MQ=60)
                                                                             CCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCG                  <  SRR4302537.5536397/94‑1 (MQ=60)
                                                                             CCAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCG                  <  SRR4302537.1663444/94‑1 (MQ=60)
                                                                              CAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGT                 <  SRR4302537.1441834/94‑1 (MQ=60)
                                                                              CAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGT                 <  SRR4302537.4908904/94‑1 (MQ=60)
                                                                              CAGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGT                 <  SRR4302537.5660126/94‑1 (MQ=60)
                                                                               AGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTC                <  SRR4302537.4660175/94‑1 (MQ=60)
                                                                               AGACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTC                >  SRR4302537.5439239/1‑94 (MQ=60)
                                                                                GACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCG               <  SRR4302537.5589844/94‑1 (MQ=60)
                                                                                GACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCG               <  SRR4302537.933675/94‑1 (MQ=60)
                                                                                 ACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGG              <  SRR4302537.4278462/94‑1 (MQ=60)
                                                                                 ACCATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGG              >  SRR4302537.4515686/1‑94 (MQ=60)
                                                                                  ACATCATGATCGCACCCGCGACAATCATCGTGAT‑GGAAATAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGG             <  SRR4302537.3664559/94‑1 (MQ=60)
                                                                                   CATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGC            >  SRR4302537.4467006/1‑94 (MQ=60)
                                                                                    ATCATGATCGCCCCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCT           <  SRR4302537.5433337/94‑1 (MQ=60)
                                                                                    ATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCT           <  SRR4302537.3670559/94‑1 (MQ=60)
                                                                                    ATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCT           >  SRR4302537.148198/1‑94 (MQ=60)
                                                                                    ATCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCT           <  SRR4302537.6318634/94‑1 (MQ=60)
                                                                                     TCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTG          <  SRR4302537.2274628/94‑1 (MQ=60)
                                                                                     TCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTG          <  SRR4302537.4549770/94‑1 (MQ=60)
                                                                                     TCATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTG          <  SRR4302537.6017090/94‑1 (MQ=60)
                                                                                      CATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGG         >  SRR4302537.418663/1‑94 (MQ=60)
                                                                                       ATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGC        >  SRR4302537.729195/1‑94 (MQ=60)
                                                                                       ATGATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGC        >  SRR4302537.3173054/1‑94 (MQ=60)
                                                                                         GATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGG      >  SRR4302537.5660189/1‑94 (MQ=60)
                                                                                         GATCGCACCAGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGG      <  SRR4302537.5894093/94‑1 (MQ=60)
                                                                                          ATCGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGGA     >  SRR4302537.5073038/1‑94 (MQ=60)
                                                                                            CGCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGGAAA   >  SRR4302537.5443907/1‑94 (MQ=60)
                                                                                             GCACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGGAAAA  <  SRR4302537.3707468/94‑1 (MQ=60)
                                                                                             |                                                                                              
AGCACTTTTTGCATCAGTTCTAAATACTGTTTCATGGTTCCTCAGGAAACGTGTTGCTGTGGGCTGCGACGATATGCCCAGACCATCATGATCACACCCGCGACAATCATCGGGAT‑GGAAAGAATTTGCCCCATGCTGATGTACTGCACCCAGGCACCGGTAAACTGCGCGTCGGGCTGGCGGAAAA  >  NC_000913/2963143‑2963329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑