Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,996,728	T→C	A55A (GCA→GCG)	b2863 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,996,728	0	T	C	97.5%	926.9 / 8.8	277	A55A (GCA→GCG)	b2863	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (3/4); new base C (147/123); total (150/127)
Fisher's exact test for biased strand distribution p-value = 7.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-01

Only 100 of 290 total aligned reads displayed.

TTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGC  >  NC_000913/2996636‑2996817

tttATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgct                                                                                           >  1:4254313/1‑93 (MQ=255)

   aTTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACTATAAATAACTTTTATCTGTTgccgcc                                                                                        >  1:1448257/1‑93 (MQ=255)

   aTTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTgccgcc                                                                                        >  2:3887592/1‑93 (MQ=255)

       cATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCg                                                                                    >  2:3475919/1‑93 (MQ=255)

       cATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCg                                                                                    <  2:6239461/93‑1 (MQ=255)

         ttttGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTg                                                                                  >  2:3285415/1‑93 (MQ=255)

           ttGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATACCTTTTATCTGTTGCCGCCCCCGTGGa                                                                                <  2:5486556/93‑1 (MQ=255)

               aaTTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTa                                                                            >  1:2149325/1‑93 (MQ=255)

                aTTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTaa                                                                           >  1:4132216/1‑93 (MQ=255)

                 tttGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAg                                                                          >  2:6462017/1‑93 (MQ=255)

                 tttGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAg                                                                          <  1:4610326/93‑1 (MQ=255)

                  ttGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGa                                                                         <  1:6086536/93‑1 (MQ=255)

                  ttGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGa                                                                         <  1:6297633/93‑1 (MQ=255)

                  ttGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGa                                                                         <  1:6341435/93‑1 (MQ=255)

                   tGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGaa                                                                        <  2:6070153/93‑1 (MQ=255)

                      cTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGt                                                                     <  2:2767116/93‑1 (MQ=255)

                       tGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGtt                                                                    >  1:290533/1‑93 (MQ=255)

                       tGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGtt                                                                    >  1:4948008/1‑93 (MQ=255)

                        gAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTa                                                                   >  2:1403159/1‑93 (MQ=255)

                        gAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTa                                                                   >  2:6396479/1‑93 (MQ=255)

                         aGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTaa                                                                  >  2:2848425/1‑93 (MQ=255)

                          gTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTaaa                                                                 >  1:1142263/1‑93 (MQ=255)

                          gTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTaaa                                                                 >  1:2819246/1‑93 (MQ=255)

                          gTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTaaa                                                                 >  1:3443077/1‑93 (MQ=255)

                          gTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTaaa                                                                 <  2:4961442/93‑1 (MQ=255)

                          gTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTaaa                                                                 >  1:4789016/1‑93 (MQ=255)

                            gAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATa                                                               <  1:2227962/93‑1 (MQ=255)

                                cAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGa                                                           <  2:2428966/93‑1 (MQ=255)

                                cAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGa                                                           <  1:4097773/93‑1 (MQ=255)

                                 agaagaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGAt                                                          <  2:1911972/93‑1 (MQ=255)

                                  gaagaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGAtt                                                         >  2:2719028/1‑93 (MQ=255)

                                  gaagaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGAtt                                                         >  2:3393078/1‑93 (MQ=255)

                                   aagaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTc                                                        <  1:3228634/93‑1 (MQ=255)

                                   aagaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTc                                                        <  1:5754474/93‑1 (MQ=255)

                                   aagaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTc                                                        >  2:1440046/1‑93 (MQ=255)

                                    agaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCa                                                       <  2:261701/93‑1 (MQ=255)

                                     gaCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCAc                                                      >  1:4026759/1‑93 (MQ=255)

                                      aCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACt                                                     <  2:3012954/93‑1 (MQ=255)

                                      aCGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACt                                                     <  2:54271/93‑1 (MQ=255)

                                          tAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTc                                                 >  1:3620667/1‑93 (MQ=255)

                                          tAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATCAAGAATGTTAAATACAGATTCACTCGTc                                                 >  2:5970291/1‑93 (MQ=255)

                                           aaTTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCa                                                >  2:4529334/1‑93 (MQ=255)

                                            aTTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCAc                                               >  1:2999189/1‑93 (MQ=255)

                                              tAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACtt                                             <  2:3505557/93‑1 (MQ=255)

                                              tAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACtt                                             <  2:442764/93‑1 (MQ=255)

                                               aGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTc                                            <  2:4667037/93‑1 (MQ=255)

                                               aGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAGTACAGATTCACTCGTCACTTc                                            <  2:4110859/93‑1 (MQ=255)

                                               aGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTc                                            <  2:3531145/93‑1 (MQ=255)

                                               aGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTc                                            <  1:5309489/93‑1 (MQ=255)

                                                ggATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCt                                           >  1:6238419/1‑93 (MQ=255)

                                                   tACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGcc                                        <  1:1723112/93‑1 (MQ=255)

                                                   tACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATAAAGATTCACTCGTCACTTCTGcc                                        >  1:1198919/1‑93 (MQ=255)

                                                      ttATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCt                                     >  1:434698/1‑93 (MQ=255)

                                                      ttATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCt                                     >  2:5315950/1‑93 (MQ=255)

                                                        aTCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGt                                   >  1:6183205/1‑93 (MQ=255)

                                                        aTCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGt                                   <  1:1076668/93‑1 (MQ=255)

                                                            ggATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGcc                               <  2:5734279/93‑1 (MQ=255)

                                                            ggATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGGATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCTcc                               >  2:4951116/1‑93 (MQ=255)

                                                             gATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGTCt                              >  2:3827951/1‑93 (MQ=255)

                                                             gATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCt                              <  1:1104399/93‑1 (MQ=255)

                                                               tttAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTgg                            <  2:5671760/93‑1 (MQ=255)

                                                               tttAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTgg                            >  2:1808707/1‑93 (MQ=255)

                                                                ttAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCACCTGTCGCCTGGc                           >  2:5193364/1‑93 (MQ=255)

                                                                 tAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCa                          <  1:2587342/93‑1 (MQ=255)

                                                                 tAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGACa                          >  2:1184965/1‑93 (MQ=255)

                                                                  aaCGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCCCTCGTCACTTCTGCCCCTGTCGCCTGGCAt                         <  2:1696054/93‑1 (MQ=255)

                                                                   aCGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCAtg                        >  1:5056831/1‑93 (MQ=255)

                                                                   aCGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCAtg                        >  2:1059194/1‑93 (MQ=255)

                                                                    cGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCAtgt                       <  1:492576/93‑1 (MQ=255)

                                                                     gATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCAtgtg                      >  2:1675110/1‑93 (MQ=255)

                                                                       taaataaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGcc                    <  1:915237/93‑1 (MQ=255)

                                                                       taaataaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGcc                    >  2:3758368/1‑93 (MQ=255)

                                                                         aataaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGc                  >  2:2020431/1‑93 (MQ=255)

                                                                         aataaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGc                  <  1:1870366/93‑1 (MQ=255)

                                                                          ataaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCa                 >  2:1302279/1‑93 (MQ=255)

                                                                          ataaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCa                 >  1:3917156/1‑93 (MQ=255)

                                                                           taaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAc                >  2:3676678/1‑93 (MQ=255)

                                                                           taaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAc                >  1:6028198/1‑93 (MQ=255)

                                                                           taaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAc                >  1:1656050/1‑93 (MQ=255)

                                                                            aaCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACg               >  2:885295/1‑93 (MQ=255)

                                                                             aCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGa              >  1:545063/1‑93 (MQ=255)

                                                                             aCTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGa              >  1:180567/1‑93 (MQ=255)

                                                                              cTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGaa             >  2:4217055/1‑93 (MQ=255)

                                                                              cTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGaa             >  1:3603437/1‑93 (MQ=255)

                                                                              cTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGaa             <  2:5572758/93‑1 (MQ=255)

                                                                                tttATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGaaaa           >  2:3309203/1‑93 (MQ=255)

                                                                                tttATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGaaaa           >  2:3993165/1‑93 (MQ=255)

                                                                                tttATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGaaaa           <  2:953684/93‑1 (MQ=255)

                                                                                 ttATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAat          <  1:986091/93‑1 (MQ=255)

                                                                                 ttATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAat          >  2:2323683/1‑93 (MQ=255)

                                                                                  tATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAata         >  1:589599/1‑93 (MQ=255)

                                                                                    tCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAAtata       >  1:2540927/1‑93 (MQ=255)

                                                                                    tCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAAtata       <  2:2143493/93‑1 (MQ=255)

                                                                                     cTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATAc      <  1:3961235/93‑1 (MQ=255)

                                                                                     cTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATAc      <  2:2943613/93‑1 (MQ=255)

                                                                                      tGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATAcc     >  1:1347258/1‑93 (MQ=255)

                                                                                      agTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATAcc     <  1:2203875/92‑1 (MQ=255)

                                                                                       gTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCa    <  1:730354/93‑1 (MQ=255)

                                                                                       gTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCa    <  2:3096449/93‑1 (MQ=255)

                                                                                         tgccgcCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGc  >  2:5790190/1‑93 (MQ=255)

TTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGC  >  NC_000913/2996636‑2996817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGC  >  NC_000913/2996635‑2996821

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCT                                                                                               >  SRR4302537.4283884/1‑94 (MQ=60)

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCT                                                                                               <  SRR4302537.1768617/94‑1 (MQ=60)

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCC                                                                                               <  SRR4302537.442365/94‑1 (MQ=60)

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCC                                                                                               <  SRR4302537.1421557/94‑1 (MQ=60)

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCC                                                                                               >  SRR4302537.5249235/1‑94 (MQ=60)

 TTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCG                                                                                              >  SRR4302537.2226776/1‑94 (MQ=60)

   TATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACTATAAATAACTTTTATCTGTTGCCGCC                                                                                            >  SRR4302537.1458348/1‑94 (MQ=60)

    ATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCC                                                                                           >  SRR4302537.960268/1‑94 (MQ=60)

     TTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCC                                                                                          <  SRR4302537.6335580/94‑1 (MQ=60)

        CATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGT                                                                                       >  SRR4302537.3270641/1‑94 (MQ=60)

        CATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGT                                                                                       >  SRR4302537.4053930/1‑94 (MQ=60)

         ATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTG                                                                                      >  SRR4302537.413602/1‑94 (MQ=60)

         ATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTG                                                                                      <  SRR4302537.3953590/94‑1 (MQ=60)

          TTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGG                                                                                     <  SRR4302537.1454060/94‑1 (MQ=60)

            TTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAA                                                                                   >  SRR4302537.4077893/1‑94 (MQ=60)

            TTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAA                                                                                   >  SRR4302537.5965362/1‑94 (MQ=60)

               TAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTA                                                                                >  SRR4302537.2164473/1‑94 (MQ=60)

                AATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAA                                                                               >  SRR4302537.4161055/1‑94 (MQ=60)

                 ATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAG                                                                              <  SRR4302537.6355006/94‑1 (MQ=60)

                 ATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAG                                                                              <  SRR4302537.2649547/94‑1 (MQ=60)

                  TTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGA                                                                             <  SRR4302537.4642249/94‑1 (MQ=60)

                  TTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGA                                                                             <  SRR4302537.1747903/94‑1 (MQ=60)

                   TTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAA                                                                            <  SRR4302537.5296125/94‑1 (MQ=60)

                   TTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAA                                                                            <  SRR4302537.6340765/94‑1 (MQ=60)

                   TTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAA                                                                            <  SRR4302537.6128348/94‑1 (MQ=60)

                   TTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAA                                                                            <  SRR4302537.6384764/94‑1 (MQ=60)

                      GCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGT                                                                         <  SRR4302537.4747045/94‑1 (MQ=60)

                      GCTGAGCGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGT                                                                         <  SRR4302537.1187691/94‑1 (MQ=60)

                       CTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTT                                                                        >  SRR4302537.4982119/1‑94 (MQ=60)

                       CTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTT                                                                        >  SRR4302537.3453598/1‑94 (MQ=60)

                       CTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTT                                                                        >  SRR4302537.292556/1‑94 (MQ=60)

                          AGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAA                                                                     >  SRR4302537.2838958/1‑94 (MQ=60)

                          AGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAA                                                                     >  SRR4302537.3467437/1‑94 (MQ=60)

                          AGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAA                                                                     >  SRR4302537.4822071/1‑94 (MQ=60)

                          AGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAA                                                                     >  SRR4302537.1150201/1‑94 (MQ=60)

                          AGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAA                                                                     <  SRR4302537.6278632/94‑1 (MQ=60)

                            TGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATA                                                                   <  SRR4302537.2072304/94‑1 (MQ=60)

                            TGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATA                                                                   >  SRR4302537.2227722/1‑94 (MQ=60)

                            TGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATA                                                                   <  SRR4302537.609910/94‑1 (MQ=60)

                             GAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATAC                                                                  <  SRR4302537.2243671/94‑1 (MQ=60)

                              AATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACA                                                                 <  SRR4302537.3521353/94‑1 (MQ=60)

                               ATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAG                                                                >  SRR4302537.1710979/1‑94 (MQ=60)

                               ATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAG                                                                <  SRR4302537.2322077/94‑1 (MQ=60)

                                TCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGA                                                               <  SRR4302537.5743481/94‑1 (MQ=60)

                                TCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGA                                                               <  SRR4302537.6319564/94‑1 (MQ=60)

                                 CAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGAT                                                              <  SRR4302537.4126381/94‑1 (MQ=60)

                                 CAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGAT                                                              <  SRR4302537.3628995/94‑1 (MQ=60)

                                   GAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTGAGAATATTAAATACAGATTA                                                            >  SRR4302537.4330916/1‑94 (MQ=60)

                                   GAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTC                                                            >  SRR4302537.119911/1‑94 (MQ=60)

                                    AAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCA                                                           <  SRR4302537.3251387/94‑1 (MQ=60)

                                    AAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCA                                                           <  SRR4302537.1852572/94‑1 (MQ=60)

                                    AAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCA                                                           <  SRR4302537.5793889/94‑1 (MQ=60)

                                     AGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCAC                                                          >  SRR4302537.4670200/1‑94 (MQ=60)

                                     AGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCAC                                                          >  SRR4302537.4054948/1‑94 (MQ=60)

                                      GACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACT                                                         <  SRR4302537.6122024/94‑1 (MQ=60)

                                      GACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACT                                                         <  SRR4302537.1747716/94‑1 (MQ=60)

                                       ACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTC                                                        <  SRR4302537.3197801/94‑1 (MQ=60)

                                       ACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTC                                                        >  SRR4302537.3520166/1‑94 (MQ=60)

                                        CGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCG                                                       <  SRR4302537.2574050/94‑1 (MQ=60)

                                          ATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTC                                                     >  SRR4302537.4232962/1‑94 (MQ=60)

                                          ATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTC                                                     >  SRR4302537.3646185/1‑94 (MQ=60)

                                           TAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCA                                                    <  SRR4302537.5977958/94‑1 (MQ=60)

                                           TAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCACCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCA                                                    <  SRR4302537.5051243/94‑1 (MQ=60)

                                            AATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCAC                                                   >  SRR4302537.3020097/1‑94 (MQ=60)

                                             ATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACT                                                  <  SRR4302537.6188928/94‑1 (MQ=60)

                                                AGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCT                                               <  SRR4302537.4468323/94‑1 (MQ=60)

                                                AGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCT                                               >  SRR4302537.6281312/1‑94 (MQ=60)

                                                AGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCT                                               >  SRR4302537.4990056/1‑94 (MQ=60)

                                                AGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCT                                               <  SRR4302537.5345966/94‑1 (MQ=60)

                                                 GGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTG                                              >  SRR4302537.3235079/1‑94 (MQ=60)

                                                   ATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCC                                            >  SRR4302537.1422114/1‑94 (MQ=60)

                                                   ATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATAAAGATTCACTCGTCACTTCTGCC                                            >  SRR4302537.1207251/1‑94 (MQ=60)

                                                    TACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCC                                           <  SRR4302537.169754/94‑1 (MQ=60)

                                                    TACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCC                                           <  SRR4302537.1735154/94‑1 (MQ=60)

                                                     ACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCC                                          <  SRR4302537.1511621/94‑1 (MQ=60)

                                                      CTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCT                                         >  SRR4302537.437729/1‑94 (MQ=60)

                                                      CTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCT                                         <  SRR4302537.1097409/94‑1 (MQ=60)

                                                       TTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTGAATACAGATTCACTCGTCACTTCTGCCCCTG                                        >  SRR4302537.1121008/1‑94 (MQ=60)

                                                       TTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTG                                        >  SRR4302537.2796337/1‑94 (MQ=60)

                                                       TTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTG                                        <  SRR4302537.4232895/94‑1 (MQ=60)

                                                       TTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTG                                        >  SRR4302537.4022796/1‑94 (MQ=60)

                                                        TATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGT                                       >  SRR4302537.6225792/1‑94 (MQ=60)

                                                         ATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTC                                      <  SRR4302537.1084085/94‑1 (MQ=60)

                                                         ATCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTC                                      >  SRR4302537.3646519/1‑94 (MQ=60)

                                                          TCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCG                                     >  SRR4302537.580221/1‑94 (MQ=60)

                                                          TCTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCG                                     <  SRR4302537.4968590/94‑1 (MQ=60)

                                                           CTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGC                                    <  SRR4302537.677483/94‑1 (MQ=60)

                                                           CTGGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGC                                    >  SRR4302537.694509/1‑94 (MQ=60)

                                                             GGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCT                                  >  SRR4302537.2232301/1‑94 (MQ=60)

                                                             GGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCT                                  >  SRR4302537.1849498/1‑94 (MQ=60)

                                                             GGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCT                                  <  SRR4302537.5512135/94‑1 (MQ=60)

                                                             GGATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCT                                  <  SRR4302537.4976316/94‑1 (MQ=60)

                                                              GATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTG                                 <  SRR4302537.436871/94‑1 (MQ=60)

                                                              GATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTG                                 <  SRR4302537.1112025/94‑1 (MQ=60)

                                                              GATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTG                                 <  SRR4302537.4950481/94‑1 (MQ=60)

                                                               ATTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGG                                <  SRR4302537.2845458/94‑1 (MQ=60)

                                                                TTTAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGC                               <  SRR4302537.1139341/94‑1 (MQ=60)

                                                                  TAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCAT                             <  SRR4302537.2605446/94‑1 (MQ=60)

                                                                  TAACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCAT                             >  SRR4302537.2211782/1‑94 (MQ=60)

                                                                   AACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATG                            >  SRR4302537.5091644/1‑94 (MQ=60)

                                                                    ACGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGT                           <  SRR4302537.978038/94‑1 (MQ=60)

                                                                     CGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTG                          >  SRR4302537.890289/1‑94 (MQ=60)

                                                                     CGATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTG                          <  SRR4302537.495968/94‑1 (MQ=60)

                                                                      GATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGC                         >  SRR4302537.2559316/1‑94 (MQ=60)

                                                                      GATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATCTGC                         >  SRR4302537.3770244/1‑94 (MQ=60)

                                                                       ATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCC                        >  SRR4302537.6205199/1‑94 (MQ=60)

                                                                       ATAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCC                        <  SRR4302537.1495760/94‑1 (MQ=60)

                                                                        TAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCG                       <  SRR4302537.921557/94‑1 (MQ=60)

                                                                        TAAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCG                       <  SRR4302537.5875827/94‑1 (MQ=60)

                                                                         AAATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGC                      <  SRR4302537.2516344/94‑1 (MQ=60)

                                                                          AATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCA                     <  SRR4302537.1883382/94‑1 (MQ=60)

                                                                          AATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCA                     >  SRR4302537.3944534/1‑94 (MQ=60)

                                                                           ATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAC                    <  SRR4302537.859469/94‑1 (MQ=60)

                                                                           ATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAC                    >  SRR4302537.6069617/1‑94 (MQ=60)

                                                                           ATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAC                    >  SRR4302537.1667657/1‑94 (MQ=60)

                                                                           ATAACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCAC                    >  SRR4302537.2981140/1‑94 (MQ=60)

                                                                             AACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGA                  >  SRR4302537.548809/1‑94 (MQ=60)

                                                                             AACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGA                  >  SRR4302537.181850/1‑94 (MQ=60)

                                                                              ACTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAA                 >  SRR4302537.3628835/1‑94 (MQ=60)

                                                                               CTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAA                >  SRR4302537.2983432/1‑94 (MQ=60)

                                                                               CTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAA                >  SRR4302537.5373675/1‑94 (MQ=60)

                                                                               CTTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAA                >  SRR4302537.6350088/1‑94 (MQ=60)

                                                                                TTTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAA               >  SRR4302537.1245575/1‑94 (MQ=60)

                                                                                 TTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAAT              <  SRR4302537.1287855/94‑1 (MQ=60)

                                                                                 TTTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAAT              >  SRR4302537.4100477/1‑94 (MQ=60)

                                                                                  TTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATA             <  SRR4302537.992901/94‑1 (MQ=60)

                                                                                  TTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATA             >  SRR4302537.593624/1‑94 (MQ=60)

                                                                                  TTATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATA             >  SRR4302537.2864707/1‑94 (MQ=60)

                                                                                   TATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATAT            >  SRR4302537.2054301/1‑94 (MQ=60)

                                                                                    ATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATA           <  SRR4302537.4132720/94‑1 (MQ=60)

                                                                                    ATCTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATA           >  SRR4302537.2558742/1‑94 (MQ=60)

                                                                                      CTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACC         >  SRR4302537.5385998/1‑94 (MQ=60)

                                                                                      CTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACC         <  SRR4302537.3988945/94‑1 (MQ=60)

                                                                                      CTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACC         >  SRR4302537.1356648/1‑94 (MQ=60)

                                                                                      CTGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCACCTGTCGCCTGGCATGTGCCGCACGAAAATATACC         <  SRR4302537.5229073/94‑1 (MQ=60)

                                                                                       TGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCA        <  SRR4302537.3975405/94‑1 (MQ=60)

                                                                                       AGTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCA        <  SRR4302537.2219418/94‑1 (MQ=60)

                                                                                        GTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAG       >  SRR4302537.4392005/1‑94 (MQ=60)

                                                                                        GTTGCCGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAG       <  SRR4302537.735341/94‑1 (MQ=60)

                                                                                             CGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGC  <  SRR4302537.3470717/94‑1 (MQ=60)

CTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTTCTGCCCCTGTCGCCTGGCATGTGCCGCACGAAAATATACCAGCGAGC  >  NC_000913/2996635‑2996821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`