Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,005,399	+C	coding (1044/1092 nt)	ygeW →	putative carbamoyl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,005,398	1	.	C	100.0%	750.4 / NA	212	I348T (ATC→ACC)	ygeW	putative carbamoyl transferase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (125/87); total (125/87)

Only 100 of 237 total aligned reads displayed.

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑CTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCC  >  NC_000913/3005306‑3005484

agaagGTGAAGTGACTGAAGGCGTATTCGAAAAATCCCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCgatgat                                                                                         <  2:1296963/93‑1 (MQ=255)

agaagGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCgatgat                                                                                         >  2:3144544/1‑93 (MQ=255)

agaagGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCgatgat                                                                                         <  1:818531/93‑1 (MQ=255)

 gaagGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑c                                                                                       <  2:4790493/93‑1 (MQ=255)

 gaagGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑c                                                                                       <  2:4915996/93‑1 (MQ=255)

  aagGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑cc                                                                                      <  1:3152901/93‑2 (MQ=255)

   agGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑cct                                                                                     <  2:3547656/93‑3 (MQ=255)

   agGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑cct                                                                                     <  1:639827/93‑3 (MQ=255)

       gAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTcc                                                                                  >  2:13681/1‑93 (MQ=255)

         aGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCg                                                                                >  2:1709304/1‑93 (MQ=255)

            gACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTaa                                                                             >  1:1562783/1‑93 (MQ=255)

              cTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAAt                                                                           >  1:1727875/1‑93 (MQ=255)

                 aaGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACg                                                                        >  2:1520394/1‑93 (MQ=255)

                  aGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGc                                                                       >  1:2581209/1‑93 (MQ=255)

                  aGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGc                                                                       <  1:3405023/93‑1 (MQ=255)

                    gCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCa                                                                     >  2:2579334/1‑93 (MQ=255)

                      gTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCaaa                                                                   >  2:166848/1‑93 (MQ=255)

                       tATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAAc                                                                  >  2:5445812/1‑93 (MQ=255)

                       tATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAAc                                                                  <  2:625067/93‑1 (MQ=255)

                         ttCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCa                                                                >  1:5538535/1‑93 (MQ=255)

                           cGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAgg                                                              <  2:5217055/93‑1 (MQ=255)

                            gAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGt                                                             >  1:5117025/1‑93 (MQ=255)

                            gAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGt                                                             >  1:1455082/1‑93 (MQ=255)

                            gAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGt                                                             >  2:2386148/1‑93 (MQ=255)

                             aaaaaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTg                                                            >  1:3388969/1‑93 (MQ=255)

                               aaaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCa                                                          >  1:2532008/1‑93 (MQ=255)

                               aaaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCa                                                          <  2:650732/93‑1 (MQ=255)

                                aaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAc                                                         <  2:370668/93‑1 (MQ=255)

                                aaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAc                                                         >  2:4216574/1‑93 (MQ=255)

                                aaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAc                                                         >  2:6230199/1‑93 (MQ=255)

                                aaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAc                                                         <  2:4661592/93‑1 (MQ=255)

                                aaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAc                                                         <  2:6041752/93‑1 (MQ=255)

                                aaTACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAc                                                         <  1:2426631/93‑1 (MQ=255)

                                   aCCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGc                                                      <  1:931731/93‑1 (MQ=255)

                                    ccGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCt                                                     >  1:4658433/1‑93 (MQ=255)

                                     cGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTc                                                    >  2:4741458/1‑93 (MQ=255)

                                         tCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAga                                                >  2:2161488/1‑92 (MQ=255)

                                         tCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGc                                                >  2:2078588/1‑93 (MQ=255)

                                         tCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGc                                                <  2:5986353/93‑1 (MQ=255)

                                          cGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGGCAAACCAGGTGCACTGCTCGAGCa                                               >  2:6348103/1‑93 (MQ=255)

                                           gCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAGCCAGGTGCACTGCTCGAGCaa                                              <  2:1931316/93‑1 (MQ=255)

                                           gCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCaa                                              <  1:3098367/93‑1 (MQ=255)

                                            ctacctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAAc                                             <  1:1867886/93‑1 (MQ=255)

                                             tacctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAAct                                            >  1:4126891/1‑93 (MQ=255)

                                              acctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActg                                           >  2:1045724/1‑93 (MQ=255)

                                              acctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActg                                           >  1:5021461/1‑93 (MQ=255)

                                              acctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActg                                           >  2:2225526/1‑93 (MQ=255)

                                              acctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActg                                           >  1:5758229/1‑93 (MQ=255)

                                               cctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActgc                                          >  1:3662970/1‑93 (MQ=255)

                                               cctacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActgc                                          >  1:3361451/1‑93 (MQ=255)

                                                 tacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActgctg                                        >  1:4031838/1‑93 (MQ=255)

                                                 tacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActgctg                                        >  1:1687310/1‑93 (MQ=255)

                                                 tacAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAActgctg                                        >  1:863809/1‑93 (MQ=255)

                                                  acAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGa                                       <  1:5588716/93‑1 (MQ=255)

                                                   cAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGaa                                      >  2:2420876/1‑93 (MQ=255)

                                                    aaaGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGaaa                                     <  1:1018773/93‑1 (MQ=255)

                                                    aaaGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGaaa                                     <  1:4673462/93‑1 (MQ=255)

                                                     aagaagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaag                                    >  1:1110176/1‑93 (MQ=255)

                                                      agaagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaaga                                   >  1:4336691/1‑93 (MQ=255)

                                                      agaagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaaga                                   <  1:1150829/93‑1 (MQ=255)

                                                      agaagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaaga                                   <  1:1404475/93‑1 (MQ=255)

                                                       gaagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaagaa                                  <  2:398435/93‑1 (MQ=255)

                                                       gaagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaagaa                                  <  1:6023359/93‑1 (MQ=255)

                                                        aagCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAaagaag                                 <  1:2076097/93‑1 (MQ=255)

                                                         agCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTCAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAgc                                >  1:5688882/1‑93 (MQ=255)

                                                         agCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAgc                                >  1:2941392/1‑93 (MQ=255)

                                                            cAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCa                             <  1:3681482/93‑1 (MQ=255)

                                                             aGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCaa                            <  1:653349/93‑1 (MQ=255)

                                                             aGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCaa                            <  1:2658313/93‑1 (MQ=255)

                                                              gCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAg                           >  2:3421646/1‑93 (MQ=255)

                                                              gCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAg                           <  2:507345/93‑1 (MQ=255)

                                                              gCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAg                           >  2:376119/1‑93 (MQ=255)

                                                              gCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGAGCAAg                           >  2:1843037/1‑93 (MQ=255)

                                                                tGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGaa                         <  2:5170088/93‑1 (MQ=255)

                                                                tGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGaa                         >  1:6234643/1‑93 (MQ=255)

                                                                tGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGaa                         <  1:3701386/93‑1 (MQ=255)

                                                                 ggAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAc                        >  1:1802238/1‑93 (MQ=255)

                                                                 ggAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAc                        >  1:6152783/1‑93 (MQ=255)

                                                                 ggAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAc                        >  1:6345276/1‑93 (MQ=255)

                                                                  gAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAcg                       <  1:2255691/93‑1 (MQ=255)

                                                                  gAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAcg                       >  1:3866398/1‑93 (MQ=255)

                                                                     gCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGt                    >  1:4241500/1‑93 (MQ=255)

                                                                      ccTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTg                   <  1:555313/93‑1 (MQ=255)

                                                                      ccTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTg                   >  2:2910471/1‑93 (MQ=255)

                                                                        ttATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGaa                 >  2:4372370/1‑93 (MQ=255)

                                                                        ttATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGaa                 >  1:764560/1‑93 (MQ=255)

                                                                           tatCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATa              <  2:712569/93‑1 (MQ=255)

                                                                           tatCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATa              <  1:4900987/93‑1 (MQ=255)

                                                                           tatCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATa              >  1:2410365/1‑93 (MQ=255)

                                                                            atcatcGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATaa             <  1:2848947/93‑1 (MQ=255)

                                                                            atcatcGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATaa             <  1:388420/93‑1 (MQ=255)

                                                                               atcGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAATTGCTGAAAGAAGCGCAAGAACGCGTGAAATAAccc          <  1:3079366/93‑1 (MQ=255)

                                                                               atcGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAAccc          <  1:4481493/93‑1 (MQ=255)

                                                                                tcGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAAcccc         <  1:4071386/93‑1 (MQ=255)

                                                                                tcGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAAcccc         >  2:559017/1‑93 (MQ=255)

                                                                                  gccgcGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAGGAACGCGTGAAATAACCCCtg       >  2:2893188/1‑92 (MQ=255)

                                                                                  gccgcGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTc       >  2:196386/1‑93 (MQ=255)

                                                                                   ccgcGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCg      <  2:579489/93‑1 (MQ=255)

                                                                                      cgATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGc   >  2:430046/1‑93 (MQ=255)

                                                                                       gatgatcCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGcc  >  2:4510891/1‑93 (MQ=255)

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑CTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCC  >  NC_000913/3005306‑3005484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑CTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCAGCT  >  NC_000913/3005306‑3005492

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑C                                                                                               >  SRR4302537.3905428/1‑94 (MQ=60)

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑C                                                                                               >  SRR4302537.875243/1‑94 (MQ=60)

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑C                                                                                               <  SRR4302537.824153/94‑1 (MQ=60)

  AAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑Cct                                                                                             <  SRR4302537.3175039/94‑3 (MQ=60)

  AAGGTGAAGAGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGTGATGAT‑Cct                                                                                             >  SRR4302537.1000421/1‑92 (MQ=60)

   AGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑Cctg                                                                                            <  SRR4302537.644185/94‑4 (MQ=60)

   AGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑Cctg                                                                                            >  SRR4302537.4597819/1‑91 (MQ=60)

   AGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑Cctg                                                                                            <  SRR4302537.5018703/94‑4 (MQ=60)

     GTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTC                                                                                           <  SRR4302537.4701135/94‑1 (MQ=60)

      TGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCC                                                                                          >  SRR4302537.297357/1‑94 (MQ=60)

      TGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCC                                                                                          >  SRR4302537.721147/1‑94 (MQ=60)

        AAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCG                                                                                        >  SRR4302537.5588616/1‑94 (MQ=60)

         AGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTGCCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGT                                                                                       <  SRR4302537.6116583/94‑1 (MQ=60)

           TGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAA                                                                                     >  SRR4302537.1573689/1‑94 (MQ=60)

            GACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAA                                                                                    >  SRR4302537.1684896/1‑94 (MQ=60)

             ACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAAT                                                                                   >  SRR4302537.2496501/1‑94 (MQ=60)

             ACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAAT                                                                                   <  SRR4302537.34233/94‑1 (MQ=60)

             ACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAAT                                                                                   >  SRR4302537.1739944/1‑94 (MQ=60)

                GAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACG                                                                                <  SRR4302537.189369/94‑1 (MQ=60)

                 AAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGC                                                                               <  SRR4302537.3286635/94‑1 (MQ=60)

                 AAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGC                                                                               >  SRR4302537.2599278/1‑94 (MQ=60)

                  AGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCC                                                                              <  SRR4302537.3429139/94‑1 (MQ=60)

                   GGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCA                                                                             <  SRR4302537.4106342/94‑1 (MQ=60)

                   GGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCA                                                                             <  SRR4302537.4427347/94‑1 (MQ=60)

                   GGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGCAAGCCTTATATCATCGCCGCGATCATCCTGTCCCGTAAATAttcca                                                                             >  SRR4302537.2116408/1‑89 (MQ=60)

                    GCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAA                                                                            <  SRR4302537.3286759/94‑1 (MQ=60)

                    GCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAA                                                                            <  SRR4302537.5977574/94‑1 (MQ=60)

                     CGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAA                                                                           <  SRR4302537.1418259/94‑1 (MQ=60)

                       TATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACC                                                                         >  SRR4302537.2306296/1‑94 (MQ=60)

                        ATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCA                                                                        >  SRR4302537.2183145/1‑94 (MQ=60)

                        ATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCA                                                                        >  SRR4302537.5576342/1‑94 (MQ=60)

                           CGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGT                                                                     >  SRR4302537.5152291/1‑94 (MQ=60)

                           CGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGT                                                                     >  SRR4302537.1465218/1‑94 (MQ=60)

                            GAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTG                                                                    <  SRR4302537.370053/94‑1 (MQ=60)

                            GAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTG                                                                    >  SRR4302537.3412975/1‑94 (MQ=60)

                             AAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGC                                                                   >  SRR4302537.3106633/1‑94 (MQ=60)

                             AAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGC                                                                   <  SRR4302537.851812/94‑1 (MQ=60)

                              AAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCA                                                                  <  SRR4302537.3392614/94‑1 (MQ=60)

                              AAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCA                                                                  >  SRR4302537.5749338/1‑94 (MQ=60)

                              AAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCA                                                                  >  SRR4302537.1873373/1‑94 (MQ=60)

                              AAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCA                                                                  >  SRR4302537.2549774/1‑94 (MQ=60)

                               AAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCAC                                                                 >  SRR4302537.1553261/1‑94 (MQ=60)

                                AATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACT                                                                <  SRR4302537.2443729/94‑1 (MQ=60)

                                   ACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCT                                                             <  SRR4302537.938156/94‑1 (MQ=60)

                                   ACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCT                                                             >  SRR4302537.4690640/1‑94 (MQ=60)

                                    CCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTCCTC                                                            >  SRR4302537.71425/1‑94 (MQ=60)

                                         TCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCA                                                       >  SRR4302537.1703364/1‑94 (MQ=60)

                                          CGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAA                                                      >  SRR4302537.352112/1‑94 (MQ=60)

                                          CGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAA                                                      >  SRR4302537.916645/1‑94 (MQ=60)

                                           GCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAAC                                                     <  SRR4302537.3119992/94‑1 (MQ=60)

                                           GCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAAC                                                     >  SRR4302537.6490411/1‑94 (MQ=60)

                                            CTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACT                                                    >  SRR4302537.4155695/1‑94 (MQ=60)

                                            CTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACT                                                    <  SRR4302537.1880889/94‑1 (MQ=60)

                                            CTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACT                                                    <  SRR4302537.5078407/94‑1 (MQ=60)

                                            CTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACT                                                    >  SRR4302537.24422/1‑94 (MQ=60)

                                             TACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTG                                                   >  SRR4302537.5797672/1‑94 (MQ=60)

                                             TACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTG                                                   >  SRR4302537.5056045/1‑94 (MQ=60)

                                             TACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTG                                                   <  SRR4302537.6282810/94‑1 (MQ=60)

                                             TACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTG                                                   <  SRR4302537.567714/94‑1 (MQ=60)

                                              ACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGC                                                  >  SRR4302537.3688750/1‑94 (MQ=60)

                                              ACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGC                                                  >  SRR4302537.3751276/1‑94 (MQ=60)

                                              ACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGC                                                  >  SRR4302537.3385263/1‑94 (MQ=60)

                                              ACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGC                                                  >  SRR4302537.4765301/1‑94 (MQ=60)

                                               CCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTGGAGCAACTGCT                                                 <  SRR4302537.4200698/94‑1 (MQ=60)

                                               CCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCT                                                 <  SRR4302537.78694/94‑1 (MQ=60)

                                                CTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTG                                                >  SRR4302537.869735/1‑94 (MQ=60)

                                                CTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTG                                                >  SRR4302537.5244417/1‑94 (MQ=60)

                                                CTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTG                                                >  SRR4302537.4060058/1‑94 (MQ=60)

                                                CTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTG                                                >  SRR4302537.1699124/1‑94 (MQ=60)

                                                 TACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGA                                               >  SRR4302537.1249897/1‑94 (MQ=60)

                                                  ACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAA                                              <  SRR4302537.5626929/94‑1 (MQ=60)

                                                    AAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAG                                            <  SRR4302537.4705795/94‑1 (MQ=60)

                                                    AAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAG                                            <  SRR4302537.1025794/94‑1 (MQ=60)

                                                    AAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAG                                            <  SRR4302537.3125316/94‑1 (MQ=60)

                                                    AAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAG                                            >  SRR4302537.1117847/1‑94 (MQ=60)

                                                     AAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGA                                           >  SRR4302537.4366798/1‑94 (MQ=60)

                                                      AGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAA                                          >  SRR4302537.5657070/1‑94 (MQ=60)

                                                      AGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAA                                          <  SRR4302537.1158829/94‑1 (MQ=60)

                                                      AGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAA                                          <  SRR4302537.2620529/94‑1 (MQ=60)

                                                      AGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAA                                          <  SRR4302537.1414256/94‑1 (MQ=60)

                                                      AGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAA                                          >  SRR4302537.6339706/1‑94 (MQ=60)

                                                      AGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAA                                          >  SRR4302537.4014360/1‑94 (MQ=60)

                                                       GAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAG                                         <  SRR4302537.6064742/94‑1 (MQ=60)

                                                        ACGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGATGCACTGCTCGAGCAACTGCTGAAAGAAGC                                        >  SRR4302537.5604730/1‑94 (MQ=60)

                                                        AAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTCAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGC                                        >  SRR4302537.5727794/1‑94 (MQ=60)

                                                        AAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGC                                        <  SRR4302537.3018998/94‑1 (MQ=60)

                                                        AAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGC                                        <  SRR4302537.2090717/94‑1 (MQ=60)

                                                        AAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGC                                        >  SRR4302537.2962042/1‑94 (MQ=60)

                                                         AGCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCG                                       >  SRR4302537.424141/1‑94 (MQ=60)

                                                          GCCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGC                                      <  SRR4302537.245362/94‑1 (MQ=60)

                                                           CCAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCA                                     >  SRR4302537.4336410/1‑94 (MQ=60)

                                                            CAGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAA                                    <  SRR4302537.3707375/94‑1 (MQ=60)

                                                             AGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTTGAGCAACTGCTGAAAGAAGCGCAAG                                   >  SRR4302537.2582774/1‑94 (MQ=60)

                                                             AGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAG                                   <  SRR4302537.657802/94‑1 (MQ=60)

                                                             AGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAG                                   <  SRR4302537.2676888/94‑1 (MQ=60)

                                                             AGCTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAG                                   >  SRR4302537.4812025/1‑94 (MQ=60)

                                                               CTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAA                                 >  SRR4302537.6277524/1‑94 (MQ=60)

                                                               CTGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAA                                 >  SRR4302537.2197795/1‑94 (MQ=60)

                                                                TGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAC                                >  SRR4302537.6195108/1‑94 (MQ=60)

                                                                TGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAC                                <  SRR4302537.3727423/94‑1 (MQ=60)

                                                                TGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAC                                >  SRR4302537.1814816/1‑94 (MQ=60)

                                                                TGGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAAC                                >  SRR4302537.6388617/1‑94 (MQ=60)

                                                                 GGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACG                               >  SRR4302537.3893459/1‑94 (MQ=60)

                                                                 GGAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACG                               <  SRR4302537.6418764/94‑1 (MQ=60)

                                                                  GAAGCCTTATATCATCGCCGCGCTGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGC                              >  SRR4302537.3649029/1‑94 (MQ=60)

                                                                  GAAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGC                              <  SRR4302537.2271613/94‑1 (MQ=60)

                                                                   AAGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCG                             <  SRR4302537.2723162/94‑1 (MQ=60)

                                                                    AGCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGT                            >  SRR4302537.4270989/1‑94 (MQ=60)

                                                                     GCCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTG                           >  SRR4302537.3765138/1‑94 (MQ=60)

                                                                      CCTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGA                          <  SRR4302537.559134/94‑1 (MQ=60)

                                                                       CTTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAA                         >  SRR4302537.769790/1‑94 (MQ=60)

                                                                        TTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAA                        >  SRR4302537.5835615/1‑94 (MQ=60)

                                                                        TTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAA                        >  SRR4302537.2753101/1‑94 (MQ=60)

                                                                        TTATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAA                        <  SRR4302537.1138019/94‑1 (MQ=60)

                                                                          ATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATA                      <  SRR4302537.1864196/94‑1 (MQ=60)

                                                                          ATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATA                      >  SRR4302537.2427339/1‑94 (MQ=60)

                                                                          ATATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATA                      >  SRR4302537.4680222/1‑94 (MQ=60)

                                                                           TATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAA                     <  SRR4302537.4934818/94‑1 (MQ=60)

                                                                            ATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAAC                    <  SRR4302537.391106/94‑1 (MQ=60)

                                                                            ATCATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAAC                    <  SRR4302537.2868897/94‑1 (MQ=60)

                                                                               ATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAATTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCC                 <  SRR4302537.3100812/94‑1 (MQ=60)

                                                                               ATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCC                 >  SRR4302537.1752887/1‑94 (MQ=60)

                                                                               ATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCC                 <  SRR4302537.4512493/94‑1 (MQ=60)

                                                                               ATCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCC                 >  SRR4302537.2955376/1‑94 (MQ=60)

                                                                                TCGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCT                <  SRR4302537.4099818/94‑1 (MQ=60)

                                                                                 CGCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTC               >  SRR4302537.128005/1‑94 (MQ=60)

                                                                                  GCTGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCGCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCG              <  SRR4302537.3917169/94‑1 (MQ=60)

                                                                                  GCCGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCG              <  SRR4302537.6196664/94‑1 (MQ=60)

                                                                                    CGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGG            <  SRR4302537.4083954/94‑1 (MQ=60)

                                                                                    CGCGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGG            >  SRR4302537.3709199/1‑94 (MQ=60)

                                                                                      CGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCC          <  SRR4302537.1041534/94‑1 (MQ=60)

                                                                                      CGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCC          >  SRR4302537.1626278/1‑94 (MQ=60)

                                                                                      CGATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCC          >  SRR4302537.5388226/1‑94 (MQ=60)

                                                                                        atgaccCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGA        <  SRR4302537.5598785/88‑1 (MQ=60)

                                                                                        ATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGA        >  SRR4302537.5676713/1‑94 (MQ=60)

                                                                                        ATGATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGA        >  SRR4302537.3696117/1‑94 (MQ=60)

                                                                                          GATCCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGCTC      >  SRR4302537.297391/1‑94 (MQ=60)

                                                                                           atcCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCA     >  SRR4302537.6251539/4‑94 (MQ=60)

                                                                                           atcCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCA     <  SRR4302537.1203923/91‑1 (MQ=60)

                                                                                           atcCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCA     >  SRR4302537.2989957/4‑94 (MQ=60)

                                                                                            tcCTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCAG    >  SRR4302537.1549675/3‑94 (MQ=60)

                                                                                              CTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCAGCT  >  SRR4302537.5674533/1‑94 (MQ=60)

                                                                                              CTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCAGCT  >  SRR4302537.3358575/1‑94 (MQ=60)

AGAAGGTGAAGTGACTGAAGGCGTATTCGAAAAATACCGTATCGCTACCTACAAAGAAGCCAGCTGGAAGCCTTATATCATCGCCGCGATGAT‑CTGTCCCGTAAATACGCCAAACCAGGTGCACTGCTCGAGCAACTGCTGAAAGAAGCGCAAGAACGCGTGAAATAACCCCTCGGGCCGATCAGCT  >  NC_000913/3005306‑3005492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`