Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,084,101 T→C intergenic (‑16/‑105) yqgB ← / → yqgC hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,084,1010TC99.6% 963.8 / NA 274intergenic (‑16/‑105)yqgB/yqgChypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (135/138);  minor base A (1/0);  total (136/138)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 281 total aligned reads displayed.

ACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGTGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAATC  >  NC_000913/3084011‑3084190
                                                                                          |                                                                                         
  aTGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGa                                                                                       >  1:3630502/1‑93 (MQ=255)
   tGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGaa                                                                                      >  2:3184521/1‑93 (MQ=255)
   tGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGaa                                                                                      >  2:1738473/1‑93 (MQ=255)
   tGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGaa                                                                                      >  2:5149053/1‑93 (MQ=255)
   tGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGaa                                                                                      >  2:5241388/1‑93 (MQ=255)
   tGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGaa                                                                                      <  1:2193540/93‑1 (MQ=255)
      aTTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGt                                                                                   <  2:3732636/93‑1 (MQ=255)
      aTTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGAGTGAAAGt                                                                                   >  1:4042046/1‑93 (MQ=255)
       ttttCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGtt                                                                                  >  2:418044/1‑93 (MQ=255)
         ttCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCg                                                                                <  2:721267/93‑1 (MQ=255)
         ttCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCg                                                                                <  2:6266859/93‑1 (MQ=255)
           ccAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGc                                                                              >  2:4557596/1‑93 (MQ=255)
              gcagTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGaa                                                                           >  1:2981015/1‑93 (MQ=255)
               cagTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGaaa                                                                          <  2:4165477/93‑1 (MQ=255)
                agTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAAc                                                                         >  1:5094662/1‑93 (MQ=255)
                  tGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCa                                                                       <  2:6363509/93‑1 (MQ=255)
                  tGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCa                                                                       >  1:3410616/1‑93 (MQ=255)
                   gAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCAc                                                                      <  1:704169/93‑1 (MQ=255)
                   gAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCAc                                                                      <  1:1654715/93‑1 (MQ=255)
                   gAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCAc                                                                      <  1:5407210/93‑1 (MQ=255)
                   gAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCAc                                                                      >  2:1869972/1‑93 (MQ=255)
                    aaTGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACg                                                                     <  2:4277427/93‑1 (MQ=255)
                    aaTGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACg                                                                     <  1:4533020/93‑1 (MQ=255)
                     aTGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACga                                                                    >  1:6204369/1‑93 (MQ=255)
                     aTGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACga                                                                    <  1:6074093/93‑1 (MQ=255)
                       gCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACgaga                                                                  >  1:3358722/1‑93 (MQ=255)
                        cTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGaa                                                                 >  2:6096841/1‑93 (MQ=255)
                         tGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGaaa                                                                <  1:6328831/93‑1 (MQ=255)
                         tGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGaaa                                                                >  1:4713160/1‑93 (MQ=255)
                           aCGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAAc                                                              <  1:1995026/93‑1 (MQ=255)
                             gCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAActc                                                            >  2:2525604/1‑93 (MQ=255)
                               tCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCtt                                                          <  1:917581/93‑1 (MQ=255)
                                ccAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTg                                                         <  1:3617618/93‑1 (MQ=255)
                                ccAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTg                                                         <  1:1260396/93‑1 (MQ=255)
                                ccAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTg                                                         <  1:4128429/93‑1 (MQ=255)
                                 cAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGt                                                        <  1:4460167/93‑1 (MQ=255)
                                  aaCTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGtt                                                       <  1:4652253/93‑1 (MQ=255)
                                   aCTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGttt                                                      <  1:2839019/93‑1 (MQ=255)
                                     tGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGctttt                                                    <  1:5558259/93‑1 (MQ=255)
                                        gcAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACa                                                 >  2:4027949/1‑93 (MQ=255)
                                         cAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACaa                                                <  2:1330814/93‑1 (MQ=255)
                                         cAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACaa                                                <  1:2555522/93‑1 (MQ=255)
                                         cAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACaa                                                <  2:3410616/93‑1 (MQ=255)
                                            ccGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAagag                                             <  2:1476449/93‑1 (MQ=255)
                                            ccGGTGTCTTTTACATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAGCTCTTGTTTTTACAagag                                             <  2:4693797/93‑1 (MQ=255)
                                               gTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAgcgc                                          >  2:3103867/1‑93 (MQ=255)
                                               gTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAgcgc                                          >  2:4449831/1‑93 (MQ=255)
                                               gTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAgcgc                                          <  2:5297821/93‑1 (MQ=255)
                                               gTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAgcgc                                          >  1:4968412/1‑93 (MQ=255)
                                                tttCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGcc                                         >  1:3198652/1‑93 (MQ=255)
                                                tttCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGcc                                         >  2:5412147/1‑93 (MQ=255)
                                                  tCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCt                                       <  1:1603132/93‑1 (MQ=255)
                                                  tCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCt                                       >  2:2674167/1‑93 (MQ=255)
                                                     ttttCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGt                                    <  1:524009/93‑1 (MQ=255)
                                                     ttttCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGt                                    <  2:4775485/93‑1 (MQ=255)
                                                      tttCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGtt                                   >  2:2092176/1‑93 (MQ=255)
                                                      tttCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGtt                                   >  1:589151/1‑93 (MQ=255)
                                                        tCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCa                                 >  1:6428794/1‑93 (MQ=255)
                                                          aTAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGt                               >  2:5391848/1‑93 (MQ=255)
                                                          aTAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGt                               >  1:356204/1‑93 (MQ=255)
                                                           tAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTc                              <  2:2151388/93‑1 (MQ=255)
                                                           tAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTc                              >  1:3080725/1‑93 (MQ=255)
                                                           tAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGCTTTTACAAGAGCGCCCTTGTTCAGTc                              >  1:4269733/1‑93 (MQ=255)
                                                             aCATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCt                            >  2:3630632/1‑93 (MQ=255)
                                                             aCATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCt                            >  1:2671869/1‑93 (MQ=255)
                                                             aCATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCt                            >  1:1944484/1‑93 (MQ=255)
                                                              cATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTc                           >  1:1459839/1‑93 (MQ=255)
                                                              cATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTc                           >  2:5640398/1‑93 (MQ=255)
                                                              cATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTc                           >  1:4419297/1‑93 (MQ=255)
                                                              cATTATTAAGCACATAACCGAACGTAAGCGTGAAAGGTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTc                           >  1:4180542/1‑93 (MQ=255)
                                                                ttattaAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCat                         >  2:613865/1‑92 (MQ=255)
                                                                 tattaAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGt                        >  2:4661287/1‑93 (MQ=255)
                                                                 tattaAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGt                        <  1:115004/93‑1 (MQ=255)
                                                                 tattaAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGt                        <  2:2626835/93‑1 (MQ=255)
                                                                  attaAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTa                       >  2:5948770/1‑93 (MQ=255)
                                                                    taAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAAc                     <  1:1073207/93‑1 (MQ=255)
                                                                    taAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAAc                     <  1:1227883/93‑1 (MQ=255)
                                                                      aGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTg                   <  2:1821078/93‑1 (MQ=255)
                                                                        cacaTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTa                 <  2:2344941/93‑1 (MQ=255)
                                                                         acaTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTaa                <  2:3497764/93‑1 (MQ=255)
                                                                         acaTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTaa                <  2:5584198/93‑1 (MQ=255)
                                                                         acaTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTaa                >  1:5815761/1‑93 (MQ=255)
                                                                         acaTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTaa                >  2:5811568/1‑93 (MQ=255)
                                                                         acaTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTaa                >  2:2750232/1‑93 (MQ=255)
                                                                          caTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAAc               >  1:5740903/1‑93 (MQ=255)
                                                                          caTAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAAc               <  2:572210/93‑1 (MQ=255)
                                                                            tAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCa             >  1:2094450/1‑93 (MQ=255)
                                                                             aaCCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAg            <  1:5922745/93‑1 (MQ=255)
                                                                              aCCGAACGTAAGCGTTAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGc           <  2:1413400/93‑1 (MQ=255)
                                                                              aCCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGc           <  2:2879684/93‑1 (MQ=255)
                                                                              aCCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGc           <  2:4911547/93‑1 (MQ=255)
                                                                              aCCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGc           >  2:2163566/1‑93 (MQ=255)
                                                                                cGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGctc         >  1:810674/1‑93 (MQ=255)
                                                                                cGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGctc         >  2:2697129/1‑93 (MQ=255)
                                                                                 gAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGctct        <  1:4861496/93‑1 (MQ=255)
                                                                                 gAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGctct        <  1:3722433/93‑1 (MQ=255)
                                                                                  aaCGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCtt       <  1:438852/93‑1 (MQ=255)
                                                                                  aaCGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCtt       <  2:876119/93‑1 (MQ=255)
                                                                                   aCGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTg      <  2:4834863/93‑1 (MQ=255)
                                                                                      tAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAAt   >  1:2060943/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGTGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAATC  >  NC_000913/3084011‑3084190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGTGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAATCCT  >  NC_000913/3084008‑3084192
                                                                                             |                                                                                           
AGCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGC                                                                                             >  SRR4302537.1223475/1‑94 (MQ=60)
 GCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCG                                                                                            <  SRR4302537.2281438/94‑1 (MQ=60)
 GCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCG                                                                                            <  SRR4302537.6478598/94‑1 (MQ=60)
 GCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCG                                                                                            <  SRR4302537.799533/94‑1 (MQ=60)
 GCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCG                                                                                            <  SRR4302537.6500613/94‑1 (MQ=60)
   ACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTG                                                                                          <  SRR4302537.4669014/94‑1 (MQ=60)
   ACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTG                                                                                          >  SRR4302537.5355715/1‑94 (MQ=60)
    CATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGA                                                                                         >  SRR4302537.3656084/1‑94 (MQ=60)
    CATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGA                                                                                         <  SRR4302537.1630688/94‑1 (MQ=60)
     ATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAA                                                                                        >  SRR4302537.4733238/1‑94 (MQ=60)
      TGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAA                                                                                       <  SRR4302537.2208991/94‑1 (MQ=60)
       GGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAG                                                                                      >  SRR4302537.4355695/1‑94 (MQ=60)
        GATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGT                                                                                     >  SRR4302537.3599898/1‑94 (MQ=60)
        GATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGAGTGAAAGT                                                                                     >  SRR4302537.4070315/1‑94 (MQ=60)
         ATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTT                                                                                    <  SRR4302537.581566/94‑1 (MQ=60)
          TTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTC                                                                                   <  SRR4302537.4452427/94‑1 (MQ=60)
            TTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGG                                                                                 >  SRR4302537.4293797/1‑94 (MQ=60)
                AGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAA                                                                             >  SRR4302537.3001864/1‑94 (MQ=60)
                AGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAA                                                                             >  SRR4302537.2068711/1‑94 (MQ=60)
                  CAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAAC                                                                           <  SRR4302537.1488319/94‑1 (MQ=60)
                  CAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAAC                                                                           >  SRR4302537.5129745/1‑94 (MQ=60)
                   AGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACC                                                                          <  SRR4302537.2623485/94‑1 (MQ=60)
                   AGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACC                                                                          <  SRR4302537.1308279/94‑1 (MQ=60)
                   AGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACC                                                                          <  SRR4302537.2101620/94‑1 (MQ=60)
                   AGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACC                                                                          >  SRR4302537.5383256/1‑94 (MQ=60)
                    GTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCA                                                                         >  SRR4302537.1790415/1‑94 (MQ=60)
                    GTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCA                                                                         >  SRR4302537.3461900/1‑94 (MQ=60)
                    GTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCA                                                                         >  SRR4302537.3434772/1‑94 (MQ=60)
                    GTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCA                                                                         <  SRR4302537.4954587/94‑1 (MQ=60)
                      GAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACG                                                                       <  SRR4302537.5444092/94‑1 (MQ=60)
                      GAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACG                                                                       <  SRR4302537.708988/94‑1 (MQ=60)
                      GAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACG                                                                       <  SRR4302537.1666312/94‑1 (MQ=60)
                       AATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGA                                                                      >  SRR4302537.3441199/1‑94 (MQ=60)
                       AATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGA                                                                      <  SRR4302537.4564410/94‑1 (MQ=60)
                       AATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGA                                                                      <  SRR4302537.73497/94‑1 (MQ=60)
                       AATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGA                                                                      >  SRR4302537.6247130/1‑94 (MQ=60)
                        ATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAG                                                                     <  SRR4302537.6115833/94‑1 (MQ=60)
                        ATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAG                                                                     <  SRR4302537.3091433/94‑1 (MQ=60)
                        ATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAG                                                                     <  SRR4302537.6337917/94‑1 (MQ=60)
                         TGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGA                                                                    >  SRR4302537.3382513/1‑94 (MQ=60)
                          GCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAA                                                                   <  SRR4302537.1988855/94‑1 (MQ=60)
                           CTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAA                                                                  >  SRR4302537.4745762/1‑94 (MQ=60)
                            TGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAA                                                                 <  SRR4302537.6372112/94‑1 (MQ=60)
                             GACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAAC                                                                <  SRR4302537.4855352/94‑1 (MQ=60)
                             GACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAAC                                                                <  SRR4302537.1881144/94‑1 (MQ=60)
                              ACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACT                                                               <  SRR4302537.2008897/94‑1 (MQ=60)
                                GCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCT                                                             <  SRR4302537.1237355/94‑1 (MQ=60)
                                 CTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTT                                                            <  SRR4302537.5798944/94‑1 (MQ=60)
                                  TCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTG                                                           <  SRR4302537.923916/94‑1 (MQ=60)
                                   CCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGT                                                          <  SRR4302537.3643123/94‑1 (MQ=60)
                                   CCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGT                                                          <  SRR4302537.1269163/94‑1 (MQ=60)
                                   CCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGT                                                          >  SRR4302537.6132679/1‑94 (MQ=60)
                                   CCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGT                                                          <  SRR4302537.4157243/94‑1 (MQ=60)
                                    CAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTT                                                         >  SRR4302537.551568/1‑94 (MQ=60)
                                    CAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTT                                                         <  SRR4302537.4491003/94‑1 (MQ=60)
                                    CAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTT                                                         <  SRR4302537.3411393/94‑1 (MQ=60)
                                    CAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTT                                                         >  SRR4302537.5529442/1‑94 (MQ=60)
                                    CAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTT                                                         <  SRR4302537.4543709/94‑1 (MQ=60)
                                     AACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTT                                                        <  SRR4302537.4684418/94‑1 (MQ=60)
                                     AACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTT                                                        >  SRR4302537.719689/1‑94 (MQ=60)
                                     AACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTT                                                        >  SRR4302537.1187558/1‑94 (MQ=60)
                                      ACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTT                                                       <  SRR4302537.2858885/94‑1 (MQ=60)
                                        TGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGCTTTTA                                                     <  SRR4302537.5596238/94‑1 (MQ=60)
                                         GCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTAC                                                    >  SRR4302537.3642493/1‑94 (MQ=60)
                                         GCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTAC                                                    <  SRR4302537.3675654/94‑1 (MQ=60)
                                         GCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTAC                                                    <  SRR4302537.4194917/94‑1 (MQ=60)
                                          CGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACA                                                   >  SRR4302537.6460879/1‑94 (MQ=60)
                                            CATCCGGTTACTTTTACATAACAATATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGAGAAGCCAAAAGAAAACTCTTGTTTTTACAAG                                                 <  SRR4302537.6513471/94‑1 (MQ=57)
                                            CAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAG                                                 <  SRR4302537.4434752/94‑1 (MQ=60)
                                            CAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAG                                                 <  SRR4302537.2573437/94‑1 (MQ=60)
                                             AACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGA                                                >  SRR4302537.3312078/1‑94 (MQ=60)
                                              ACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAG                                               <  SRR4302537.6121511/94‑1 (MQ=60)
                                               CCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGC                                              <  SRR4302537.1961545/94‑1 (MQ=60)
                                               CCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGC                                              <  SRR4302537.875910/94‑1 (MQ=60)
                                               CCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGC                                              <  SRR4302537.3208192/94‑1 (MQ=60)
                                               CCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGC                                              >  SRR4302537.5880021/1‑94 (MQ=60)
                                                CGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTCCAAGAGCG                                             >  SRR4302537.4414199/1‑94 (MQ=60)
                                                CGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCG                                             <  SRR4302537.3879465/94‑1 (MQ=60)
                                                 GGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGC                                            >  SRR4302537.5002651/1‑94 (MQ=60)
                                                  GTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCC                                           >  SRR4302537.3221143/1‑94 (MQ=60)
                                                   TTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCC                                          >  SRR4302537.3684149/1‑94 (MQ=60)
                                                     TCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTT                                        <  SRR4302537.4135923/94‑1 (MQ=60)
                                                     TCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTT                                        <  SRR4302537.1614337/94‑1 (MQ=60)
                                                      CTTTTTCATAACATTATTAAGAACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTG                                       >  SRR4302537.2091168/1‑94 (MQ=60)
                                                       TTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGT                                      <  SRR4302537.967439/94‑1 (MQ=60)
                                                       TTTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGT                                      >  SRR4302537.1256139/1‑94 (MQ=60)
                                                        TTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTT                                     >  SRR4302537.593174/1‑94 (MQ=60)
                                                        TTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTT                                     <  SRR4302537.527605/94‑1 (MQ=60)
                                                        TTTTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTT                                     <  SRR4302537.4778410/94‑1 (MQ=60)
                                                          TTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCA                                   >  SRR4302537.6472475/1‑94 (MQ=60)
                                                          TTCATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCA                                   >  SRR4302537.4426276/1‑94 (MQ=60)
                                                            CATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGT                                 >  SRR4302537.358680/1‑94 (MQ=60)
                                                            CATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGT                                 >  SRR4302537.5742621/1‑94 (MQ=60)
                                                             ATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTC                                >  SRR4302537.3102179/1‑94 (MQ=60)
                                                             ATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTC                                >  SRR4302537.1317923/1‑94 (MQ=60)
                                                             ATAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGCTTTTACAAGAGCGCCCTTGTTCAGTC                                >  SRR4302537.4299399/1‑94 (MQ=60)
                                                              TAACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCC                               <  SRR4302537.225463/94‑1 (MQ=60)
                                                               AACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCT                              >  SRR4302537.1122409/1‑94 (MQ=60)
                                                               AACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCT                              >  SRR4302537.1957999/1‑94 (MQ=60)
                                                               AACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCT                              >  SRR4302537.2690534/1‑94 (MQ=60)
                                                                ACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTC                             >  SRR4302537.1469998/1‑94 (MQ=60)
                                                                ACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTC                             >  SRR4302537.4449807/1‑94 (MQ=60)
                                                                ACATTATTAAGCACATAACCGAACGTAAGCGTGAAAGGTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTC                             >  SRR4302537.4209723/1‑94 (MQ=60)
                                                                 CATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCA                            >  SRR4302537.2881947/1‑94 (MQ=60)
                                                                 CATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCA                            >  SRR4302537.3966696/1‑94 (MQ=60)
                                                                  ATTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAG                           >  SRR4302537.3103294/1‑94 (MQ=60)
                                                                   TTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGT                          >  SRR4302537.2769474/1‑94 (MQ=60)
                                                                   TTATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGT                          >  SRR4302537.5937299/1‑94 (MQ=60)
                                                                    TATTAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTA                         <  SRR4302537.115840/94‑1 (MQ=60)
                                                                       TAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACT                      <  SRR4302537.1080601/94‑1 (MQ=60)
                                                                       TAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACT                      <  SRR4302537.1236423/94‑1 (MQ=60)
                                                                       TAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACT                      <  SRR4302537.6045120/94‑1 (MQ=60)
                                                                       TAAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACT                      >  SRR4302537.5081631/1‑94 (MQ=60)
                                                                        AAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTG                     <  SRR4302537.4483941/94‑1 (MQ=60)
                                                                        AAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTG                     >  SRR4302537.15455/1‑94 (MQ=60)
                                                                        AAGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTG                     >  SRR4302537.6027536/1‑94 (MQ=60)
                                                                         AGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGT                    <  SRR4302537.5872448/94‑1 (MQ=60)
                                                                         AGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGT                    <  SRR4302537.3233210/94‑1 (MQ=60)
                                                                         AGCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGT                    <  SRR4302537.2872873/94‑1 (MQ=60)
                                                                          GCACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTA                   >  SRR4302537.4737736/1‑94 (MQ=60)
                                                                          ACACATAACCGAACGTAAGAGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTA                   <  SRR4302537.4180207/94‑1 (MQ=60)
                                                                           CACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAA                  >  SRR4302537.5855628/1‑94 (MQ=60)
                                                                            ACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACTAGAAAACTCTTGTTTTTACAAGATCGCCCTTGTTCAGTACTCAGTAACTGTAAC                 >  SRR4302537.5910002/1‑94 (MQ=60)
                                                                            ACATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAAC                 >  SRR4302537.5780210/1‑94 (MQ=60)
                                                                             CATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACC                >  SRR4302537.834177/1‑94 (MQ=60)
                                                                             CATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACC                >  SRR4302537.2800010/1‑94 (MQ=60)
                                                                              ATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCA               >  SRR4302537.5117881/1‑94 (MQ=60)
                                                                              ATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCA               >  SRR4302537.2109220/1‑94 (MQ=60)
                                                                              ATAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCA               >  SRR4302537.627914/1‑94 (MQ=60)
                                                                               TAACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTGGTTCAGTCCTCAGTAACTGTAACCAG              <  SRR4302537.2621456/94‑1 (MQ=60)
                                                                                AACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGC             >  SRR4302537.4561966/1‑94 (MQ=60)
                                                                                AACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGC             >  SRR4302537.5621453/1‑94 (MQ=60)
                                                                                AACCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGC             <  SRR4302537.5963383/94‑1 (MQ=60)
                                                                                  CCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTC           >  SRR4302537.816230/1‑94 (MQ=60)
                                                                                  CCGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTC           >  SRR4302537.4117656/1‑94 (MQ=60)
                                                                                   CGAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCT          >  SRR4302537.3387546/1‑94 (MQ=60)
                                                                                    GAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTT         <  SRR4302537.4895033/94‑1 (MQ=60)
                                                                                    GAACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTT         <  SRR4302537.3748587/94‑1 (MQ=60)
                                                                                     AACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTG        >  SRR4302537.2064398/1‑94 (MQ=60)
                                                                                     AACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTG        <  SRR4302537.2266803/94‑1 (MQ=60)
                                                                                     AACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTG        <  SRR4302537.3644713/94‑1 (MQ=60)
                                                                                     AACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTG        >  SRR4302537.6434910/1‑94 (MQ=60)
                                                                                     AACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTG        <  SRR4302537.441905/94‑1 (MQ=60)
                                                                                     AACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTG        >  SRR4302537.5246137/1‑94 (MQ=60)
                                                                                      ACGTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGA       <  SRR4302537.2157875/94‑1 (MQ=60)
                                                                                        GTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAAT     >  SRR4302537.2075413/1‑94 (MQ=60)
                                                                                        GTAAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAAT     >  SRR4302537.4921185/1‑94 (MQ=60)
                                                                                          AAGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAATCC   <  SRR4302537.1227254/94‑1 (MQ=60)
                                                                                           AGCGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAATCCT  <  SRR4302537.3858219/94‑1 (MQ=60)
                                                                                             |                                                                                           
AGCACATGGATTTTCCAGCAGTGAATGCTGACGCTCCAACTGCGCAACCGGTTTCTTTTTCATAACATTATTAAGCACATAACCGAACGTAAGTGTGAAAGTTCGGCGAAACCACGAGAAAACTCTTGTTTTTACAAGAGCGCCCTTGTTCAGTCCTCAGTAACTGTAACCAGCTCTTGAATCCT  >  NC_000913/3084008‑3084192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑