Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,212,429 |
A→G |
D581G (GAC→GGC) |
rpoD → |
RNA polymerase sigma(70) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,212,429 | 0 | A | G | 100.0%
| 825.8
/ NA
| 242 | D581G (GAC→GGC) | rpoD | RNA polymerase sigma(70) |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (130/112); total (130/112) |
Only 100 of 256 total aligned reads displayed.
TGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCC > NC_000913/3212339‑3212518
|
tGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCg > 2:4808247/1‑93 (MQ=255)
gACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACTCCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGt < 1:2829429/93‑1 (MQ=255)
gACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGt < 1:3509070/93‑1 (MQ=255)
cgcgcgTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTAc > 1:576180/1‑93 (MQ=255)
gcgcgTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTAcc < 2:2755045/93‑1 (MQ=255)
gcgTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCcg > 1:3447774/1‑93 (MQ=255)
cgTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCcgc > 2:1374320/1‑93 (MQ=255)
cgTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCcgc < 1:4231703/93‑1 (MQ=255)
gAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGaa < 2:5431217/93‑1 (MQ=255)
gAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGaa < 2:4117442/93‑1 (MQ=255)
gAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGaa > 1:43195/1‑93 (MQ=255)
aGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACg > 1:3010821/1‑93 (MQ=255)
aGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACg < 2:4251309/93‑1 (MQ=255)
aGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACg > 1:4070335/1‑93 (MQ=255)
aGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACg > 1:1392960/1‑93 (MQ=255)
aGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACg < 2:627646/93‑1 (MQ=255)
gCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGt < 2:4167597/93‑1 (MQ=255)
gCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGt < 1:3252889/93‑1 (MQ=255)
cAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTa > 2:1980695/1‑93 (MQ=255)
aaaaGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTAt < 2:332334/93‑1 (MQ=255)
aaaaGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTAt > 2:5168636/1‑93 (MQ=255)
aaaaGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTAt > 1:5549332/1‑93 (MQ=255)
aaaGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATc > 1:6256316/1‑93 (MQ=255)
aaaGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATc > 1:3722746/1‑93 (MQ=255)
ttCTGCGTATGCGTTTGGGTATGGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTc < 2:2609409/93‑1 (MQ=255)
tCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCa < 1:3398897/93‑1 (MQ=255)
tGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGa < 2:2509415/93‑1 (MQ=255)
tGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGa > 2:2102604/1‑93 (MQ=255)
gCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGAt < 1:5168340/93‑1 (MQ=255)
gTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcg > 2:5014899/1‑93 (MQ=255)
gTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcg < 1:2458069/93‑1 (MQ=255)
aTGCTTTTCGGTATCGATATGACCACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaa < 2:1762437/93‑1 (MQ=255)
aTGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgag > 2:2167452/1‑92 (MQ=255)
aTGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaa < 1:3288438/93‑1 (MQ=255)
aTGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaa < 2:4354051/93‑1 (MQ=255)
aTGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaa > 1:5839772/1‑93 (MQ=255)
aTGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaa > 1:4915932/1‑93 (MQ=255)
tGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTCCCCGCGAACGTATCCGTCAGATcgaag < 2:5513585/93‑1 (MQ=255)
gCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagc < 2:3886565/93‑1 (MQ=255)
gCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagc < 1:1475593/93‑1 (MQ=255)
gCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagc > 2:6390599/1‑93 (MQ=255)
cGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagcg < 1:201815/93‑1 (MQ=255)
gTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagcga > 2:668041/1‑93 (MQ=255)
gTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagcga > 1:3209906/1‑93 (MQ=255)
gTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagcga < 1:3135839/93‑1 (MQ=255)
tttCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagcgaa > 1:5304723/1‑93 (MQ=255)
ttCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATcgaagcgaag < 2:2569988/93‑1 (MQ=255)
cgctATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgc < 2:1008123/90‑1 (MQ=255)
cGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgc < 2:1283351/93‑1 (MQ=255)
gTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgcgc > 2:2920916/1‑93 (MQ=255)
gTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgcgc < 1:4353756/93‑1 (MQ=255)
gTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgcgc > 2:5880434/1‑93 (MQ=255)
gTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgcgc < 1:868610/93‑1 (MQ=255)
gTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgcgc < 1:1712718/93‑1 (MQ=255)
gTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGgcgc < 2:1710895/93‑1 (MQ=255)
tATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCt < 1:120198/93‑1 (MQ=255)
tCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTgc < 2:363713/93‑1 (MQ=255)
tCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTgc < 1:2360021/93‑1 (MQ=255)
cGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTgcg > 1:1817816/1‑93 (MQ=255)
gATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTgcgc > 1:6475577/1‑93 (MQ=255)
gATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCACTgcgc > 1:5611771/1‑93 (MQ=255)
atGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCaaa > 1:2690606/1‑93 (MQ=255)
tGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAAc < 2:1034252/93‑1 (MQ=255)
tGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAAc < 1:5426625/93‑1 (MQ=255)
aaCACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTg > 1:729791/1‑93 (MQ=255)
aaCACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTg > 1:2179458/1‑93 (MQ=255)
aCTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCAcc > 1:3822730/1‑93 (MQ=255)
cTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCAccc > 2:3089319/1‑93 (MQ=255)
tACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCg > 2:1625013/1‑93 (MQ=255)
acacGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGa < 2:6422410/93‑1 (MQ=255)
cacGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAg > 1:2754312/1‑93 (MQ=255)
acGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGc < 2:1222225/93‑1 (MQ=255)
gCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCg > 1:1924364/1‑93 (MQ=255)
cTGGAAGAAGTGGGTAAACAGTCCGGCGTTCCCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGt < 2:449076/93‑1 (MQ=255)
tGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGtt > 2:5270295/1‑93 (MQ=255)
tGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGtt > 1:2127117/1‑93 (MQ=255)
tGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGtt > 2:613110/1‑93 (MQ=255)
tGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGtt < 2:146072/93‑1 (MQ=255)
ggAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTc < 2:3775492/93‑1 (MQ=255)
ggAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTc < 1:5237723/93‑1 (MQ=255)
aagaagTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTg > 1:1659977/1‑93 (MQ=255)
agaagTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGa > 1:4377292/1‑93 (MQ=255)
agaagTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGa < 1:6288629/93‑1 (MQ=255)
gaagTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGaa > 1:1080007/1‑93 (MQ=255)
agTGGGTAAACATTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGt < 2:4580451/93‑1 (MQ=255)
gTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtg > 2:2868621/1‑93 (MQ=255)
tGGGTAAACAGTTCGGCGTTCCCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtgc < 2:266001/93‑1 (MQ=255)
gggTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtgct < 2:2420034/93‑1 (MQ=255)
gggTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtgct > 2:7535/1‑93 (MQ=255)
ggTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtgctg < 2:3516515/93‑1 (MQ=255)
gTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtgctgc > 1:2882303/1‑93 (MQ=255)
gTAAACAGTTCGGCGTTACCCGCAAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGtgctgc < 1:4933319/93‑1 (MQ=255)
tAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCg > 1:4455722/1‑93 (MQ=255)
aCAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAg > 1:5979974/1‑93 (MQ=255)
aGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCt < 2:4033911/93‑1 (MQ=255)
gTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCtt > 1:6188181/1‑93 (MQ=255)
ttCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTc > 2:1829917/1‑93 (MQ=255)
ttCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGACGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTc > 1:4542643/1‑93 (MQ=255)
tCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCCCCCGAGCCGTTCTGAAGTGCTGCGTAGCTTcc < 2:775676/93‑1 (MQ=255)
tCGGCGTGACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTcc < 1:934739/93‑1 (MQ=255)
|
TGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCC > NC_000913/3212339‑3212518
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGA > NC_000913/3212337‑3212522
|
CCTGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTGTCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGC > SRR4302537.4579536/1‑94 (MQ=60)
CCTGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGC < SRR4302537.4338765/94‑1 (MQ=60)
CTGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCG > SRR4302537.2473013/1‑94 (MQ=60)
TGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGT > SRR4302537.3531784/1‑94 (MQ=60)
GACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACTCCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTT < SRR4302537.2849196/94‑1 (MQ=60)
GACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTT < SRR4302537.3533897/94‑1 (MQ=60)
GCCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTA < SRR4302537.2148693/94‑1 (MQ=60)
ACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTA < SRR4302537.5076183/94‑1 (MQ=60)
CCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTAC > SRR4302537.580128/1‑94 (MQ=60)
GCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCC < SRR4302537.4406886/94‑1 (MQ=60)
GCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTAGGCGTTACAC > SRR4302537.2132951/1‑94 (MQ=60)
CGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCG > SRR4302537.3472162/1‑94 (MQ=60)
GCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGC > SRR4302537.3868418/1‑94 (MQ=60)
GCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGC > SRR4302537.689585/1‑94 (MQ=60)
CGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCG > SRR4302537.5624114/1‑94 (MQ=60)
CGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCG < SRR4302537.4261160/94‑1 (MQ=60)
CGTGAAGCAAAAGTTCTGCGTATGCGGTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCG > SRR4302537.78613/1‑94 (MQ=60)
TGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAA > SRR4302537.43519/1‑94 (MQ=60)
AAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACG > SRR4302537.3022311/1‑94 (MQ=60)
AAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACG > SRR4302537.3031768/1‑94 (MQ=60)
AAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACG > SRR4302537.1402674/1‑94 (MQ=60)
AAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACG > SRR4302537.4098761/1‑94 (MQ=60)
AAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACG > SRR4302537.6331002/1‑94 (MQ=60)
AAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACG > SRR4302537.6330833/1‑94 (MQ=60)
GCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTA < SRR4302537.6521746/94‑1 (MQ=60)
GCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTA < SRR4302537.3275829/94‑1 (MQ=60)
CAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTAT > SRR4302537.5587224/1‑94 (MQ=60)
AAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATC > SRR4302537.3748904/1‑94 (MQ=60)
AAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATC > SRR4302537.6299288/1‑94 (MQ=60)
AGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGT < SRR4302537.1771412/94‑1 (MQ=60)
GTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTC > SRR4302537.1619171/1‑94 (MQ=60)
TCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAG < SRR4302537.5677282/94‑1 (MQ=60)
TCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAG < SRR4302537.3422973/94‑1 (MQ=60)
GCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATC < SRR4302537.5203938/94‑1 (MQ=60)
GTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGA < SRR4302537.2475356/94‑1 (MQ=60)
GTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGA > SRR4302537.3079899/1‑94 (MQ=60)
GTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGA > SRR4302537.4363273/1‑94 (MQ=60)
GTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGA > SRR4302537.1957187/1‑94 (MQ=60)
TATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAA > SRR4302537.4949853/1‑94 (MQ=60)
TATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAA > SRR4302537.1273570/1‑94 (MQ=60)
TATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAA > SRR4302537.5879814/1‑94 (MQ=60)
ATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAG > SRR4302537.2029426/1‑94 (MQ=60)
ATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAG > SRR4302537.3978465/1‑94 (MQ=60)
ATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAG < SRR4302537.3311678/94‑1 (MQ=60)
ATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAG < SRR4302537.3243308/94‑1 (MQ=60)
GCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCG < SRR4302537.5575401/94‑1 (MQ=60)
GCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCG < SRR4302537.1485848/94‑1 (MQ=60)
CGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGA < SRR4302537.203259/94‑1 (MQ=60)
CGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGA > SRR4302537.3446484/1‑94 (MQ=60)
CGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGA > SRR4302537.282951/1‑94 (MQ=60)
CGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGA > SRR4302537.3232474/1‑94 (MQ=60)
GTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAA < SRR4302537.3157849/94‑1 (MQ=60)
GTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAA > SRR4302537.5341183/1‑94 (MQ=60)
TTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAG < SRR4302537.3626339/94‑1 (MQ=60)
CGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCG > SRR4302537.1005348/1‑94 (MQ=60)
GGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGC > SRR4302537.124128/1‑94 (MQ=60)
GGTATCGATATGAACACCGACTACACGCTGGAAGAAGCGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGtatc > SRR4302537.1670262/1‑90 (MQ=60)
GGTAACGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGCAACCGTCAGAGCGAAGCGAAGGCGC > SRR4302537.6513812/1‑94 (MQ=60)
GTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCT < SRR4302537.1724678/94‑1 (MQ=60)
GTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCT < SRR4302537.2298633/94‑1 (MQ=60)
GTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCT < SRR4302537.874575/94‑1 (MQ=60)
GTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCT < SRR4302537.4383902/94‑1 (MQ=60)
TATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTG < SRR4302537.121059/94‑1 (MQ=60)
TCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCG > SRR4302537.1830485/1‑94 (MQ=60)
TCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCG < SRR4302537.2376664/94‑1 (MQ=60)
CGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGC > SRR4302537.6519544/1‑94 (MQ=60)
CGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGC < SRR4302537.2961628/94‑1 (MQ=60)
CGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCACTGCGC > SRR4302537.5650138/1‑94 (MQ=60)
GATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGATCGGCGTTACCCGCGAACGTATCCGTCAGATCGCAGCGAAGGCGCTGCGCA > SRR4302537.6151749/1‑94 (MQ=60)
ATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAA < SRR4302537.3721635/94‑1 (MQ=60)
ATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAA > SRR4302537.6158451/1‑94 (MQ=60)
TATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAA > SRR4302537.2709380/1‑94 (MQ=60)
ATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAAC < SRR4302537.319379/94‑1 (MQ=60)
TGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACT < SRR4302537.5463621/94‑1 (MQ=60)
GAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTG > SRR4302537.2194817/1‑94 (MQ=60)
GAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTG > SRR4302537.734776/1‑94 (MQ=60)
GAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTG > SRR4302537.2739422/1‑94 (MQ=60)
GAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTG < SRR4302537.2854541/94‑1 (MQ=60)
AACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGC > SRR4302537.1810849/1‑94 (MQ=60)
CACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGT > SRR4302537.468614/1‑94 (MQ=60)
ACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTC < SRR4302537.5312897/94‑1 (MQ=60)
CGACTACACGCTGGAAGAAGCGGGTAAACAGTTCGGCGTTACCCGCGAACGCATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCCTCAC > SRR4302537.4459237/1‑94 (MQ=60)
GACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACC > SRR4302537.3329754/1‑94 (MQ=60)
GACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACC < SRR4302537.5832149/94‑1 (MQ=60)
GACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACC > SRR4302537.226858/1‑94 (MQ=60)
GACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACC > SRR4302537.3849535/1‑94 (MQ=60)
ACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCC < SRR4302537.5563237/94‑1 (MQ=60)
ACTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCAACC > SRR4302537.796471/1‑94 (MQ=60)
CTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCG < SRR4302537.1721978/94‑1 (MQ=60)
CTACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCG < SRR4302537.3476809/94‑1 (MQ=60)
ACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAG > SRR4302537.927/1‑94 (MQ=60)
ACACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAG > SRR4302537.2773542/1‑94 (MQ=60)
ACGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCC < SRR4302537.5240795/94‑1 (MQ=60)
CGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCG > SRR4302537.1937723/1‑94 (MQ=60)
CGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCG < SRR4302537.5886818/94‑1 (MQ=60)
CGCTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCG < SRR4302537.1165324/94‑1 (MQ=60)
CTGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTT > SRR4302537.2142078/1‑94 (MQ=60)
TGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTC > SRR4302537.969673/1‑94 (MQ=60)
TGGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTC < SRR4302537.496687/94‑1 (MQ=60)
GGAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCT < SRR4302537.5273761/94‑1 (MQ=60)
GAAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTG > SRR4302537.1671612/1‑94 (MQ=60)
AAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGA > SRR4302537.4407514/1‑94 (MQ=60)
AAGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGA > SRR4302537.4407515/1‑94 (MQ=60)
AGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAATCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTCAA > SRR4302537.3086750/1‑94 (MQ=60)
AGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAA > SRR4302537.1087462/1‑94 (MQ=60)
AGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAA < SRR4302537.6331735/94‑1 (MQ=60)
AGAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCAGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAA > SRR4302537.3140448/1‑94 (MQ=60)
GAAGTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGAGTCACCCGAGCCGTTCTGAAG < SRR4302537.1906138/94‑1 (MQ=60)
GTGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCCCCCGAGCCGTTCTGAAGTGC < SRR4302537.331102/94‑1 (MQ=60)
TGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCT > SRR4302537.4304051/1‑94 (MQ=60)
TGGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCT < SRR4302537.4495898/94‑1 (MQ=60)
GGGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTG > SRR4302537.4525114/1‑94 (MQ=60)
GGTAACCAGTGCGGCTTTACCCGCGAACTTATCCGTCATATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGC < SRR4302537.6151015/94‑1 (MQ=60)
GGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGC > SRR4302537.2902532/1‑94 (MQ=60)
GGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGC > SRR4302537.5130377/1‑94 (MQ=60)
GGTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAACTGCTGC > SRR4302537.5130376/1‑94 (MQ=60)
GTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCG < SRR4302537.5817100/94‑1 (MQ=60)
GTAAACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCG > SRR4302537.4486493/1‑94 (MQ=60)
GTAAACAGTTCGGCGTTACCCGCAAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCG < SRR4302537.4967344/94‑1 (MQ=60)
GAAAACGGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCG < SRR4302537.2081887/94‑1 (MQ=60)
AACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAG > SRR4302537.3356758/1‑94 (MQ=60)
AACAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAG > SRR4302537.6021018/1‑94 (MQ=60)
CAGTTCGGCGTTACCCGCGATCGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCT < SRR4302537.4330122/94‑1 (MQ=60)
CAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCT > SRR4302537.5750493/1‑94 (MQ=60)
CAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCT > SRR4302537.2790989/1‑94 (MQ=60)
CAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCT > SRR4302537.4121810/1‑94 (MQ=60)
CAGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCT > SRR4302537.5435552/1‑94 (MQ=60)
AGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTT > SRR4302537.3792907/1‑94 (MQ=60)
AGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTT > SRR4302537.6230810/1‑94 (MQ=60)
AGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTT > SRR4302537.6267646/1‑94 (MQ=60)
AGTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGCTCTGAAGTGCTGCGTAGCTT > SRR4302537.53420/1‑94 (MQ=60)
AGTTCGGCGGTACCCGCGAACGTATCCTTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTT < SRR4302537.3233758/94‑1 (MQ=60)
GTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTC > SRR4302537.1459782/1‑94 (MQ=60)
GTTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGACGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTC > SRR4302537.4574084/1‑94 (MQ=60)
TTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCT > SRR4302537.4448810/1‑94 (MQ=60)
TTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCC < SRR4302537.2657369/94‑1 (MQ=60)
TTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCC < SRR4302537.2657368/94‑1 (MQ=60)
TTCGGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCC < SRR4302537.4871109/94‑1 (MQ=60)
TCGGCGTGACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCT < SRR4302537.941181/94‑1 (MQ=60)
CGGCGTTACCCGCGAACGTACCAGTCAGATCGAAGCGAAGGCCCTGCGCAAACTGCGTCCCCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTG < SRR4302537.5872258/94‑1 (MQ=60)
GGCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGG > SRR4302537.5670064/1‑94 (MQ=60)
GCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGA < SRR4302537.6020539/94‑1 (MQ=60)
GCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGA < SRR4302537.3722675/94‑1 (MQ=60)
GCGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGA > SRR4302537.5837882/1‑94 (MQ=60)
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CCTGACCGCGCGTGAAGCAAAAGTTCTGCGTATGCGTTTCGGTATCGATATGAACACCGACTACACGCTGGAAGAAGTGGGTAAACAGTTCGACGTTACCCGCGAACGTATCCGTCAGATCGAAGCGAAGGCGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGA > NC_000913/3212337‑3212522
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
