Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,312,337	A→G	I440T (ATC→ACC)	infB ←	protein chain initiation factor IF‑2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,312,337	0	A	G	100.0%	867.3 / NA	250	I440T (ATC→ACC)	infB	protein chain initiation factor IF‑2
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (117/133); total (117/133)

Only 100 of 255 total aligned reads displayed.

GCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGATCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATG  >  NC_000913/3312247‑3312426

 caacaaCCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCa                                                                                        <  2:5245032/93‑1 (MQ=255)

  aacaacCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCAt                                                                                       <  1:4604569/93‑1 (MQ=255)

  aacaacCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCAt                                                                                       <  2:5397267/93‑1 (MQ=255)

   acaacCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATg                                                                                      <  2:5159282/93‑1 (MQ=255)

           gACTACGATGCCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGGCGTTTTc                                                                              <  1:1985379/93‑1 (MQ=255)

             cTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAg                                                                            >  2:1659633/1‑93 (MQ=255)

             cTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTATCCAGGAAGGTGGTCATGCCGTTTTCAg                                                                            >  1:6218243/1‑93 (MQ=255)

              tACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGt                                                                           >  1:3693342/1‑93 (MQ=255)

              tACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGt                                                                           <  1:5170728/93‑1 (MQ=255)

               aCGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGtt                                                                          <  1:86360/93‑1 (MQ=255)

               aCGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGtt                                                                          <  1:5098153/93‑1 (MQ=255)

               aCGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGtt                                                                          <  1:3265987/93‑1 (MQ=255)

               aCGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGtt                                                                          <  1:5764068/93‑1 (MQ=255)

                cGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGttt                                                                         <  1:186115/93‑1 (MQ=255)

                 gATGTCCGCTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTc                                                                        <  1:3967435/93‑1 (MQ=255)

                  aTGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCa                                                                       <  1:3230126/93‑1 (MQ=255)

                   tGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCac                                                                      >  2:3511570/1‑92 (MQ=255)

                   tGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCaa                                                                      >  2:3201253/1‑93 (MQ=255)

                   tGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCaa                                                                      >  2:6444108/1‑93 (MQ=255)

                      ccGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGt                                                                   <  1:339804/93‑1 (MQ=255)

                       cGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTg                                                                  >  2:5969417/1‑93 (MQ=255)

                         ttGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGt                                                                <  2:5810401/93‑1 (MQ=255)

                         ttGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGAGGTCATGCCGTTTTCAGCTTCAACGTTGt                                                                >  2:3957862/1‑93 (MQ=255)

                          tGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTa                                                               <  1:710989/93‑1 (MQ=255)

                           gCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTAt                                                              <  2:3310718/93‑1 (MQ=255)

                            ccTGCGCACCGCGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATg                                                             <  1:4079111/93‑1 (MQ=255)

                            ccTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATg                                                             >  2:1923999/1‑93 (MQ=255)

                            ccTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATg                                                             <  1:4266207/93‑1 (MQ=255)

                             cTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCATCGTGGTATGc                                                            <  1:4115183/93‑1 (MQ=255)

                             cTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGc                                                            <  1:4325869/93‑1 (MQ=255)

                              tGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCa                                                           >  2:5054539/1‑93 (MQ=255)

                              tGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCa                                                           <  1:3126482/93‑1 (MQ=255)

                                  caccacGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCaa                                                       <  2:275512/93‑1 (MQ=255)

                                   accacGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAAt                                                      >  1:3599910/1‑93 (MQ=255)

                                      acGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAAtgtg                                                   >  2:2340311/1‑93 (MQ=255)

                                       cGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCTGTTTTCAGTTTCAACGTGGTATGCACCAATGTGc                                                  >  2:4711624/1‑93 (MQ=255)

                                       cGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGc                                                  >  2:4118897/1‑93 (MQ=255)

                                       cGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGc                                                  <  2:5435653/93‑1 (MQ=255)

                                       cGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGc                                                  <  2:686173/93‑1 (MQ=255)

                                        gAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCt                                                 <  1:3360127/93‑1 (MQ=255)

                                         aGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTg                                                <  2:5521419/93‑1 (MQ=255)

                                          gCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTgg                                               <  2:1351277/93‑1 (MQ=255)

                                           cACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTggg                                              >  1:3478869/1‑93 (MQ=255)

                                           cACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTggg                                              >  1:5583407/1‑93 (MQ=255)

                                           cACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTggg                                              >  2:2033875/1‑93 (MQ=255)

                                            aCGCATTGAAGTAAACGCGGCGTTCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGt                                             <  2:22457/93‑1 (MQ=255)

                                            aCGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGt                                             >  1:1188844/1‑93 (MQ=255)

                                              gCATTGAATTAAACGCGGCTTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTaa                                           >  2:6293107/1‑93 (MQ=255)

                                              gCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTaa                                           <  2:1467506/93‑1 (MQ=255)

                                              gCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTaa                                           >  2:5011005/1‑93 (MQ=255)

                                              gCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTaa                                           <  1:504012/93‑1 (MQ=255)

                                               cATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAAt                                          <  2:113582/93‑1 (MQ=255)

                                               cATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAAt                                          <  1:5238006/93‑1 (MQ=255)

                                               cATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAAt                                          >  2:2914804/1‑93 (MQ=255)

                                                aTTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATg                                         <  2:1460462/93‑1 (MQ=255)

                                                aTTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATg                                         <  1:1592288/93‑1 (MQ=255)

                                                aTTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATg                                         >  1:2210534/1‑93 (MQ=255)

                                                 ttGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATgc                                        <  2:1041627/93‑1 (MQ=255)

                                                   taaGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATgccg                                      <  2:565292/92‑1 (MQ=255)

                                                   gAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATgccg                                      >  1:2388163/1‑93 (MQ=255)

                                                    aaGTAAGCGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATgccgc                                     <  2:905129/93‑1 (MQ=255)

                                                     aGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATgccgcc                                    >  1:1000712/1‑93 (MQ=255)

                                                     aGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATgccgcc                                    <  1:1372064/93‑1 (MQ=255)

                                                      gTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGccgccc                                   <  1:1300056/93‑1 (MQ=255)

                                                       tAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATTCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGccgcccg                                  >  1:173229/1‑93 (MQ=255)

                                                           cgcgGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTc                              <  2:3256371/93‑1 (MQ=255)

                                                            gcggcgTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCg                             >  1:760389/1‑93 (MQ=255)

                                                              ggcgTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGcc                           >  1:2610491/1‑93 (MQ=255)

                                                               gcgTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCa                          <  2:388770/93‑1 (MQ=255)

                                                                 gTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCaga                        >  1:272164/1‑93 (MQ=255)

                                                                 gTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCaga                        <  1:4165015/93‑1 (MQ=255)

                                                                   gCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAgg                      <  2:45692/93‑1 (MQ=255)

                                                                   gCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAgg                      <  2:207252/93‑1 (MQ=255)

                                                                   gCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAgg                      <  2:4048083/93‑1 (MQ=255)

                                                                   gCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGAAATTCCCCGCGCTTCGCCAGAgg                      >  2:3689004/1‑93 (MQ=255)

                                                                    ccccGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGc                     >  2:2459266/1‑93 (MQ=255)

                                                                     cccGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGcc                    >  2:4656331/1‑93 (MQ=255)

                                                                     cccGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGcc                    >  2:6198056/1‑93 (MQ=255)

                                                                      ccGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCa                   >  2:4510690/1‑93 (MQ=255)

                                                                      ccGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCa                   <  1:5804638/93‑1 (MQ=255)

                                                                      ccGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCa                   <  1:5957147/93‑1 (MQ=255)

                                                                       cGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCAc                  <  2:1881904/93‑1 (MQ=255)

                                                                       cGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCAc                  >  2:4851733/1‑93 (MQ=255)

                                                                        ggggTGTCCAGGAAGGTGGTCATGCCGTTTTCAGGTTCAACGTGGTATGCACCAATGTGCTAGGTAATGCCGCCCGCTTCGCCAGAGGCCACt                 >  1:952338/1‑93 (MQ=255)

                                                                          ggTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACttt               >  1:4568567/1‑93 (MQ=255)

                                                                          ggTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACttt               <  2:3625057/93‑1 (MQ=255)

                                                                          ggTGGCCGGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCCCCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACttt               <  2:2393774/93‑1 (MQ=255)

                                                                            tgtCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCg             <  1:2292567/93‑1 (MQ=255)

                                                                            tgtCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCg             <  2:5512640/93‑1 (MQ=255)

                                                                             gtCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGt            <  1:6144092/93‑1 (MQ=255)

                                                                             gtCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGt            <  2:6347269/93‑1 (MQ=255)

                                                                              tCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGtt           <  1:5630525/93‑1 (MQ=255)

                                                                                  ggAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAc       >  1:2919104/1‑93 (MQ=255)

                                                                                  ggAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAc       >  2:1644029/1‑93 (MQ=255)

                                                                                  ggAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAc       >  1:5750742/1‑93 (MQ=255)

                                                                                  ggAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAc       >  2:2546692/1‑93 (MQ=255)

                                                                                     aGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGaa    >  1:4830811/1‑93 (MQ=255)

                                                                                     aGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGaa    >  2:6154876/1‑93 (MQ=255)

                                                                                      ggtggtCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAAt   >  2:3137218/1‑93 (MQ=255)

                                                                                      ggtggtCATGCCGTGTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAAt   <  1:6325762/93‑1 (MQ=255)

GCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGATCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATG  >  NC_000913/3312247‑3312426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGATCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTAGT  >  NC_000913/3312245‑3312430

CAGCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGT                                                                                              <  SRR4302537.826806/94‑1 (MQ=60)

 AGCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTC                                                                                             <  SRR4302537.338600/94‑1 (MQ=60)

 AGCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTC                                                                                             <  SRR4302537.5669027/94‑1 (MQ=60)

  GCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCA                                                                                            <  SRR4302537.2165176/94‑1 (MQ=60)

    AACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATG                                                                                          <  SRR4302537.4636450/94‑1 (MQ=60)

    AACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATG                                                                                          >  SRR4302537.2459177/1‑94 (MQ=60)

      CAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCC                                                                                        <  SRR4302537.2754199/94‑1 (MQ=60)

        ACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGT                                                                                      >  SRR4302537.3243449/1‑94 (MQ=60)

        ACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGT                                                                                      >  SRR4302537.3336761/1‑94 (MQ=60)

            GGACTACGATGTGCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTC                                                                                  <  SRR4302537.4767801/94‑1 (MQ=60)

             GACTACGATGCCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGGCGTTTTCA                                                                                 <  SRR4302537.1999174/94‑1 (MQ=60)

              ACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTATCCAGGAAGGTGGTCATGCCGTTTTCAG                                                                                >  SRR4302537.6261055/1‑94 (MQ=60)

               CTACGATGTCCGTTGCCTGCGCACCACTAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGT                                                                               >  SRR4302537.4098393/1‑94 (MQ=60)

               CTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGT                                                                               >  SRR4302537.3719334/1‑94 (MQ=60)

                TACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTT                                                                              <  SRR4302537.1327683/94‑1 (MQ=60)

                TACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTT                                                                              <  SRR4302537.5073057/94‑1 (MQ=60)

                TACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTT                                                                              <  SRR4302537.5206333/94‑1 (MQ=60)

                 ACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTT                                                                             <  SRR4302537.3289022/94‑1 (MQ=60)

                 ACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTT                                                                             <  SRR4302537.5133267/94‑1 (MQ=60)

                 ACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTT                                                                             <  SRR4302537.86987/94‑1 (MQ=60)

                 ACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTT                                                                             <  SRR4302537.5803551/94‑1 (MQ=60)

                  CGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTC                                                                            <  SRR4302537.187440/94‑1 (MQ=60)

                  CGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTC                                                                            <  SRR4302537.4117555/94‑1 (MQ=60)

                  CGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGCGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTC                                                                            >  SRR4302537.3318558/1‑94 (MQ=60)

                   GATGTCCGCTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCA                                                                           <  SRR4302537.3995198/94‑1 (MQ=60)

                    ATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAA                                                                          <  SRR4302537.3252892/94‑1 (MQ=60)

                     TGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAAC                                                                         <  SRR4302537.3237793/94‑1 (MQ=60)

                      GTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACG                                                                        <  SRR4302537.5132958/94‑1 (MQ=60)

                      GTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACG                                                                        >  SRR4302537.2531848/1‑94 (MQ=60)

                      GTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACG                                                                        >  SRR4302537.835133/1‑94 (MQ=60)

                      GTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACG                                                                        <  SRR4302537.1087177/94‑1 (MQ=60)

                       TCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGT                                                                       >  SRR4302537.1627328/1‑94 (MQ=60)

                        CCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTG                                                                      <  SRR4302537.342160/94‑1 (MQ=60)

                        CCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGGCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTG                                                                      >  SRR4302537.3576471/1‑94 (MQ=60)

                         CGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGG                                                                     >  SRR4302537.3854113/1‑94 (MQ=60)

                         CGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGG                                                                     <  SRR4302537.2699710/94‑1 (MQ=60)

                         CGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGG                                                                     <  SRR4302537.5549046/94‑1 (MQ=60)

                         CGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGG                                                                     <  SRR4302537.595742/94‑1 (MQ=60)

                          GTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGT                                                                    >  SRR4302537.2890617/1‑94 (MQ=60)

                            TGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTAT                                                                  <  SRR4302537.715855/94‑1 (MQ=60)

                            TGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTAT                                                                  <  SRR4302537.4120681/94‑1 (MQ=60)

                            TGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTAT                                                                  <  SRR4302537.1982447/94‑1 (MQ=60)

                             GCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATG                                                                 >  SRR4302537.2309890/1‑94 (MQ=60)

                              CCTGCGCACCGCGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGC                                                                <  SRR4302537.4107587/94‑1 (MQ=60)

                              CCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGC                                                                >  SRR4302537.3261108/1‑94 (MQ=60)

                              CCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGC                                                                <  SRR4302537.4295851/94‑1 (MQ=60)

                               CTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCATCGTGGTATGCA                                                               <  SRR4302537.4143928/94‑1 (MQ=60)

                               CTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCA                                                               <  SRR4302537.5343719/94‑1 (MQ=60)

                               CTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCA                                                               <  SRR4302537.4355943/94‑1 (MQ=60)

                               CTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCA                                                               <  SRR4302537.340408/94‑1 (MQ=60)

                                TGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCAC                                                              <  SRR4302537.3148386/94‑1 (MQ=60)

                                  CGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCA                                                            >  SRR4302537.2321875/1‑94 (MQ=60)

                                    CACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAAT                                                          <  SRR4302537.740676/94‑1 (MQ=60)

                                    CACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAAT                                                          >  SRR4302537.3625283/1‑94 (MQ=60)

                                     ACCACGAGCGCGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATG                                                         >  SRR4302537.1567118/1‑94 (MQ=60)

                                       CACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTG                                                       <  SRR4302537.967873/94‑1 (MQ=60)

                                       CACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTG                                                       <  SRR4302537.1999514/94‑1 (MQ=60)

                                       CACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTG                                                       >  SRR4302537.3016677/1‑94 (MQ=60)

                                         CGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCT                                                     >  SRR4302537.5849215/1‑94 (MQ=60)

                                          GAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTG                                                    <  SRR4302537.3383927/94‑1 (MQ=60)

                                           AGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGG                                                   <  SRR4302537.4154489/94‑1 (MQ=60)

                                           AGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGG                                                   <  SRR4302537.4951125/94‑1 (MQ=60)

                                            GCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGG                                                  >  SRR4302537.5621576/1‑94 (MQ=60)

                                            GCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGG                                                  >  SRR4302537.3503485/1‑94 (MQ=60)

                                             CACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGT                                                 >  SRR4302537.1197102/1‑94 (MQ=60)

                                             CACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGT                                                 >  SRR4302537.3435302/1‑94 (MQ=60)

                                              ACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTA                                                <  SRR4302537.5191001/94‑1 (MQ=60)

                                                GCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAAT                                              <  SRR4302537.507477/94‑1 (MQ=60)

                                                 CATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATG                                             <  SRR4302537.5274048/94‑1 (MQ=60)

                                                 CATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATG                                             <  SRR4302537.521907/94‑1 (MQ=60)

                                                 CATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATG                                             <  SRR4302537.4273129/94‑1 (MQ=60)

                                                 CATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATG                                             >  SRR4302537.4476284/1‑94 (MQ=60)

                                                 CATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATG                                             >  SRR4302537.6490030/1‑94 (MQ=60)

                                                 CATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATG                                             >  SRR4302537.2226123/1‑94 (MQ=60)

                                                  ATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGC                                            >  SRR4302537.3880115/1‑94 (MQ=60)

                                                  ATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGC                                            <  SRR4302537.1603416/94‑1 (MQ=60)

                                                  ATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGC                                            >  SRR4302537.2244147/1‑94 (MQ=60)

                                                   TTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCC                                           <  SRR4302537.4301861/94‑1 (MQ=60)

                                                    TGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCG                                          >  SRR4302537.2404983/1‑94 (MQ=60)

                                                      AAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCC                                        >  SRR4302537.1007620/1‑94 (MQ=60)

                                                       AGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCC                                       <  SRR4302537.1381642/94‑1 (MQ=60)

                                                       AGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCC                                       <  SRR4302537.4620679/94‑1 (MQ=60)

                                                        GTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATTCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCG                                      >  SRR4302537.174459/1‑94 (MQ=60)

                                                        GTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCG                                      <  SRR4302537.1309094/94‑1 (MQ=60)

                                                          AAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCT                                    <  SRR4302537.6496852/94‑1 (MQ=60)

                                                          AAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCT                                    <  SRR4302537.572162/94‑1 (MQ=60)

                                                          AAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCT                                    >  SRR4302537.954876/1‑94 (MQ=60)

                                                          AAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGCTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCT                                    <  SRR4302537.4582660/94‑1 (MQ=60)

                                                           AACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTT                                   >  SRR4302537.1164555/1‑94 (MQ=60)

                                                             CGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCG                                 >  SRR4302537.765584/1‑94 (MQ=60)

                                                               CGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCC                               >  SRR4302537.2628753/1‑94 (MQ=60)

                                                               CGGCGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCC                               <  SRR4302537.128411/94‑1 (MQ=60)

                                                                  CGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGA                            <  SRR4302537.5832822/94‑1 (MQ=60)

                                                                  CGTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGA                            >  SRR4302537.274076/1‑94 (MQ=60)

                                                                   GTGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAG                           <  SRR4302537.4194105/94‑1 (MQ=60)

                                                                    TGCCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGCTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGG                          <  SRR4302537.3487078/94‑1 (MQ=60)

                                                                      CCCCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCC                        <  SRR4302537.5625430/94‑1 (MQ=60)

                                                                        CCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGTCGCCCGCTTCGCCAGAGGCCAC                      >  SRR4302537.5795617/1‑94 (MQ=60)

                                                                        CCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCAC                      <  SRR4302537.5998036/94‑1 (MQ=60)

                                                                        CCGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCAC                      <  SRR4302537.5844440/94‑1 (MQ=60)

                                                                         CGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACT                     >  SRR4302537.5836498/1‑94 (MQ=60)

                                                                         CGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACT                     >  SRR4302537.5779210/1‑94 (MQ=60)

                                                                         CGGGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGGTTCAACGTGGTATGCACCAATGTGCTAGGTAATGCCGCCCGCTTCGCCAGAGGCCACT                     >  SRR4302537.958918/1‑94 (MQ=60)

                                                                           GGGTGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTT                   >  SRR4302537.4600185/1‑94 (MQ=60)

                                                                              TGTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGT                <  SRR4302537.2308750/94‑1 (MQ=60)

                                                                               GTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTT               <  SRR4302537.3553431/94‑1 (MQ=60)

                                                                               GTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTT               <  SRR4302537.6186340/94‑1 (MQ=60)

                                                                               GTCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTT               >  SRR4302537.6191697/1‑94 (MQ=60)

                                                                                TCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTG              <  SRR4302537.5669047/94‑1 (MQ=60)

                                                                                TCCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTG              <  SRR4302537.6289005/94‑1 (MQ=60)

                                                                                 CCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGA             >  SRR4302537.1597472/1‑94 (MQ=60)

                                                                                 CCAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGA             >  SRR4302537.4250953/1‑94 (MQ=60)

                                                                                  CAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAA            >  SRR4302537.86329/1‑94 (MQ=60)

                                                                                  CAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAA            >  SRR4302537.1789929/1‑94 (MQ=60)

                                                                                  CAGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAA            >  SRR4302537.3664986/1‑94 (MQ=60)

                                                                                   AGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAC           >  SRR4302537.2939619/1‑94 (MQ=60)

                                                                                   AGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAC           <  SRR4302537.182049/94‑1 (MQ=60)

                                                                                   AGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAC           >  SRR4302537.5790134/1‑94 (MQ=60)

                                                                                   AGGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAAC           >  SRR4302537.604985/1‑94 (MQ=60)

                                                                                    GGAAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACG          <  SRR4302537.1206075/94‑1 (MQ=60)

                                                                                      AAGGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAA        >  SRR4302537.4864176/1‑94 (MQ=60)

                                                                                        GGTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATG      >  SRR4302537.6200009/1‑94 (MQ=60)

                                                                                        GGTGGTCATGCCGTGTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATG      <  SRR4302537.6369030/94‑1 (MQ=60)

                                                                                         GTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGT     <  SRR4302537.5153414/94‑1 (MQ=60)

                                                                                         GTGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGT     <  SRR4302537.483689/94‑1 (MQ=60)

                                                                                          TGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTA    <  SRR4302537.1671267/94‑1 (MQ=60)

                                                                                          TGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTA    <  SRR4302537.1827603/94‑1 (MQ=60)

                                                                                          TGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTA    >  SRR4302537.3386852/1‑94 (MQ=60)

                                                                                          TGGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTA    <  SRR4302537.1411065/94‑1 (MQ=60)

                                                                                           GGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTAG   >  SRR4302537.6488493/1‑94 (MQ=60)

                                                                                           GGTCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTAG   <  SRR4302537.4142348/94‑1 (MQ=60)

                                                                                            GTCATGCCGTTTTCAGTTTCAAAGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTAGT  >  SRR4302537.569926/1‑94 (MQ=60)

CAGCAACAACCAGGACTACGATGTCCGTTGCCTGCGCACCACGAGCACGCATTGAAGTAAACGCGGCGTGCCCCGGGGTGTCCAGGAAGGTGATCATGCCGTTTTCAGTTTCAACGTGGTATGCACCAATGTGCTGGGTAATGCCGCCCGCTTCGCCAGAGGCCACTTTCGTTGAACGAATGTAGT  >  NC_000913/3312245‑3312430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`