Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 882 254.4 12957588 98.0% 12698436 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,998,290 +G coding (379/486 nt) b4566 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,998,2891.G100.0% 900.1 / NA 258L127P (CTG→CCG) b4566hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (125/133);  total (125/133)

Only 100 of 281 total aligned reads displayed.

GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT  >  NC_000913/3998197‑3998376
                                                                                             |                                                                                        
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa                                                                                           >  1:6100817/1‑93 (MQ=255)
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa                                                                                           >  2:2366154/1‑93 (MQ=255)
gACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCa                                                                                           >  2:4215502/1‑93 (MQ=255)
 aCTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑g                                                                                         >  1:4402107/1‑93 (MQ=255)
 aCTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑g                                                                                         <  2:2054304/93‑1 (MQ=255)
  cTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑gg                                                                                        >  2:6080015/1‑92 (MQ=255)
  cTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑gg                                                                                        <  2:2675557/93‑2 (MQ=255)
    gCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggac                                                                                      <  2:1556604/93‑4 (MQ=255)
    gCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggac                                                                                      <  2:1695694/93‑4 (MQ=255)
     cACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑ggacg                                                                                     <  2:3538126/93‑5 (MQ=255)
       ccGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGa                                                                                   <  1:5665540/93‑1 (MQ=255)
       ccGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGa                                                                                   >  1:5611623/1‑93 (MQ=255)
       ccGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGa                                                                                   <  1:4867856/93‑1 (MQ=255)
            aaCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAg                                                                              <  1:2254585/93‑1 (MQ=255)
            aaCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAg                                                                              <  2:5204868/93‑1 (MQ=255)
             aCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGa                                                                             <  1:4455942/93‑1 (MQ=255)
             aCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGa                                                                             <  2:2609826/93‑1 (MQ=255)
             aCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGa                                                                             <  2:1183985/93‑1 (MQ=255)
             aCTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGa                                                                             >  2:1274655/1‑93 (MQ=255)
              cTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGaa                                                                            >  1:875080/1‑93 (MQ=255)
              cTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGaa                                                                            >  1:1612368/1‑93 (MQ=255)
               tGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGaaa                                                                           <  1:65743/93‑1 (MQ=255)
                  aTCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGGAGTTc                                                                        >  1:262042/1‑93 (MQ=255)
                  aTCTCTTTACTGGATTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTc                                                                        >  2:752852/1‑93 (MQ=255)
                    ctctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTccc                                                                      >  2:524927/1‑93 (MQ=255)
                     tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAGAACACGCCGCCAGG‑ACGGATAAAGCAATTACCt                                                                     >  1:1446613/1‑93 (MQ=255)
                     tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCt                                                                     >  1:1920367/1‑93 (MQ=255)
                     tctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTACCGCGACATAAAACACGGCGCCAGG‑ACGGATCAAGAAATTCCCt                                                                     >  1:790540/1‑93 (MQ=255)
                      ctTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCtt                                                                    >  1:2502130/1‑93 (MQ=255)
                          aCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCAcc                                                                <  1:4633804/93‑1 (MQ=255)
                          aCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCAcc                                                                >  1:5412518/1‑93 (MQ=255)
                             ggTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGa                                                             <  1:3055173/93‑1 (MQ=255)
                              gTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGaa                                                            >  2:5926377/1‑93 (MQ=255)
                              gTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGaa                                                            <  1:3978742/93‑1 (MQ=255)
                              gTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGaa                                                            <  2:4372723/93‑1 (MQ=255)
                                   gAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCgag                                                       <  2:2217331/93‑1 (MQ=255)
                                    aaGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCgaga                                                      <  1:2353997/93‑1 (MQ=255)
                                    aaGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCgaga                                                      >  2:5840131/1‑93 (MQ=255)
                                     aGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAt                                                     >  1:4841822/1‑93 (MQ=255)
                                      ggCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAtt                                                    >  2:5594086/1‑93 (MQ=255)
                                      ggCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCCGAAGCGAGAtt                                                    >  1:55423/1‑93 (MQ=255)
                                        cATCCAGACGAACGATGCCGTCTTTATCGCCCGCGACATAAAGCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTa                                                  <  2:2293672/93‑1 (MQ=255)
                                        cATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTa                                                  <  1:271468/93‑1 (MQ=255)
                                         aTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa                                                 <  1:1122607/93‑1 (MQ=255)
                                         aTCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTaa                                                 <  1:2812797/93‑1 (MQ=255)
                                          tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc                                                <  2:875080/93‑1 (MQ=255)
                                          tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc                                                >  2:5109860/1‑93 (MQ=255)
                                          tCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAc                                                >  2:543428/1‑93 (MQ=255)
                                           ccAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACg                                               >  2:3654088/1‑93 (MQ=255)
                                             aGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGcc                                             >  2:3229223/1‑93 (MQ=255)
                                              gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa                                            <  1:5215124/93‑1 (MQ=255)
                                              gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa                                            <  1:3310563/93‑1 (MQ=255)
                                              gACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCa                                            >  1:3581859/1‑93 (MQ=255)
                                               acgaacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAc                                           >  1:6134562/1‑93 (MQ=255)
                                                  aacgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCtt                                        >  2:5721758/1‑93 (MQ=255)
                                                   acgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTc                                       <  1:1369742/93‑1 (MQ=255)
                                                   acgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTc                                       <  1:1282695/93‑1 (MQ=255)
                                                   acgaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTc                                       >  1:6356477/1‑93 (MQ=255)
                                                     gaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctg                                     >  2:3709519/1‑93 (MQ=255)
                                                     gaTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctg                                     >  1:5066815/1‑93 (MQ=255)
                                                      aTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgc                                    <  1:213141/93‑1 (MQ=255)
                                                      aTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgc                                    <  2:631030/93‑1 (MQ=255)
                                                      aTGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgc                                    >  2:3178359/1‑93 (MQ=255)
                                                       tGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgct                                   >  2:1119314/1‑93 (MQ=255)
                                                       tGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTctgct                                   <  2:276967/93‑1 (MQ=255)
                                                         ccGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGa                                 >  1:500037/1‑93 (MQ=255)
                                                          cGACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAc                                >  2:6042523/1‑93 (MQ=255)
                                                           gACTTTATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAcc                               >  1:5312415/1‑93 (MQ=255)
                                                              tttATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtt                            >  2:3074993/1‑93 (MQ=255)
                                                              tttATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtt                            >  1:4081538/1‑93 (MQ=255)
                                                                tATCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtttt                          >  1:3867802/1‑93 (MQ=255)
                                                                tATCCCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGtttt                          <  2:429153/93‑1 (MQ=255)
                                                                 aTCTCCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTc                         <  1:2900433/93‑1 (MQ=255)
                                                                  tctcCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCg                        >  2:3334796/1‑93 (MQ=255)
                                                                   ctcCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGa                       <  1:4177853/93‑1 (MQ=255)
                                                                    tcCCGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAt                      <  1:1236365/93‑1 (MQ=255)
                                                                      ccGCGACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGt                    <  1:426886/93‑1 (MQ=255)
                                                                       cgcgACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTa                   <  1:1553188/93‑1 (MQ=255)
                                                                        gcgACATAAAACACGACGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTAc                  >  2:4770377/1‑93 (MQ=255)
                                                                         cgACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACa                 <  2:5858165/93‑1 (MQ=255)
                                                                          gACATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaa                <  2:2083308/93‑1 (MQ=255)
                                                                           aCATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaaa               <  1:1054403/93‑1 (MQ=255)
                                                                           aCATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACaaa               <  2:3972042/93‑1 (MQ=255)
                                                                            cATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAc              <  2:36130/93‑1 (MQ=255)
                                                                            cATAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAc              >  2:6451424/1‑93 (MQ=255)
                                                                             aTAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAcc             >  1:5919048/1‑93 (MQ=255)
                                                                              tAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCg            <  1:2794275/93‑1 (MQ=255)
                                                                              tAAAACACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCg            >  2:2501774/1‑93 (MQ=255)
                                                                               aaaaCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa           >  1:1899376/1‑93 (MQ=255)
                                                                               aaaaCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa           <  2:5505150/93‑1 (MQ=255)
                                                                               aaaaCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa           <  2:4874515/93‑1 (MQ=255)
                                                                               aaaaCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGa           <  1:3841251/93‑1 (MQ=255)
                                                                                aaaCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAg          <  2:4605675/93‑1 (MQ=255)
                                                                                 aaCACGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgc         <  1:1655230/93‑1 (MQ=255)
                                                                                  acgcgccgcCA‑GTACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcg        <  2:1446613/90‑1 (MQ=255)
                                                                                  acacGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcg        <  2:4523291/93‑1 (MQ=255)
                                                                                  acacGCCGCCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcg        >  2:377173/1‑93 (MQ=255)
                                                                                     cgccgcCAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAgcggcg     <  2:2835745/93‑1 (MQ=255)
                                                                                      gccgccAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGgcgc    >  1:4305734/1‑93 (MQ=255)
                                                                                      gccgccAGG‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGgcgc    >  1:3257544/1‑93 (MQ=255)
                                                                                             |                                                                                        
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G‑ACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCAT  >  NC_000913/3998197‑3998376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTC  >  NC_000913/3998197‑3998383
                                                                                              |                                                                                             
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                               >  SRR4302537.4152009/1‑94 (MQ=60)
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑G                                                                                               >  SRR4302537.4432484/1‑94 (MQ=60)
 ACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGATCGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GG                                                                                              <  SRR4302537.4587315/94‑1 (MQ=60)
 ACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GG                                                                                              >  SRR4302537.2860660/1‑94 (MQ=60)
   TGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Ggac                                                                                            <  SRR4302537.6398086/94‑4 (MQ=60)
   TGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Ggac                                                                                            <  SRR4302537.6109819/94‑4 (MQ=60)
   TGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Ggac                                                                                            <  SRR4302537.5434205/94‑4 (MQ=60)
     CACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGG                                                                                           >  SRR4302537.2345080/1‑94 (MQ=60)
     CACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGG                                                                                           >  SRR4302537.4049807/1‑94 (MQ=60)
     CACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑Ggacgt                                                                                          <  SRR4302537.1850311/94‑6 (MQ=60)
      ACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGA                                                                                          >  SRR4302537.5649989/1‑94 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGAT                                                                                         >  SRR4302537.663347/1‑94 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGAT                                                                                         <  SRR4302537.4901446/94‑1 (MQ=60)
       CCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGAT                                                                                         <  SRR4302537.5704303/94‑1 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATA                                                                                        >  SRR4302537.4724983/1‑94 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATA                                                                                        >  SRR4302537.32361/1‑94 (MQ=60)
        CGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATA                                                                                        >  SRR4302537.5641998/1‑94 (MQ=60)
         GCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAA                                                                                       >  SRR4302537.1607754/1‑94 (MQ=60)
           AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAG                                                                                     >  SRR4302537.3992528/1‑94 (MQ=60)
           AAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAG                                                                                     <  SRR4302537.6447775/94‑1 (MQ=60)
            AACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGA                                                                                    <  SRR4302537.2270500/94‑1 (MQ=60)
             ACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAA                                                                                   >  SRR4302537.1623635/1‑94 (MQ=60)
             ACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAA                                                                                   >  SRR4302537.881096/1‑94 (MQ=60)
             ACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAA                                                                                   <  SRR4302537.4486714/94‑1 (MQ=60)
             ACAGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCCCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAA                                                                                   <  SRR4302537.782486/94‑1 (MQ=60)
              CTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAA                                                                                  >  SRR4302537.4283496/1‑94 (MQ=60)
               TGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAT                                                                                 >  SRR4302537.84861/1‑94 (MQ=60)
               TGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAAT                                                                                 <  SRR4302537.66231/94‑1 (MQ=60)
                GAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATT                                                                                >  SRR4302537.3111248/1‑94 (MQ=60)
                 AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGGAGTTC                                                                               >  SRR4302537.263889/1‑94 (MQ=60)
                 AATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTC                                                                               <  SRR4302537.106520/94‑1 (MQ=60)
                    CTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAGAACACGCCGCCAGGACGGATAAAGCAATTACCT                                                                            >  SRR4302537.1456693/1‑94 (MQ=60)
                    CTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCT                                                                            >  SRR4302537.1933704/1‑94 (MQ=60)
                    CTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCT                                                                            <  SRR4302537.5288399/94‑1 (MQ=60)
                    CTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTACCGCGACATAAAACACGGCGCCAGGACGGATCAAGAAATTCCCT                                                                            >  SRR4302537.795968/1‑94 (MQ=60)
                     TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTT                                                                           >  SRR4302537.2519732/1‑94 (MQ=60)
                     TCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTAGCTCCCGCGACATAAAACCCGCCGCCAGGACGGATAAAGAAATTCCCTT                                                                           <  SRR4302537.2082709/94‑1 (MQ=60)
                        TTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCAC                                                                        >  SRR4302537.1185507/1‑94 (MQ=60)
                         TACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACC                                                                       >  SRR4302537.5449423/1‑94 (MQ=60)
                         TACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACC                                                                       >  SRR4302537.3435880/1‑94 (MQ=60)
                          TCTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCT                                                                      <  SRR4302537.1377675/94‑1 (MQ=60)
                          ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCT                                                                      >  SRR4302537.4645593/1‑94 (MQ=60)
                          ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCT                                                                      <  SRR4302537.4665856/94‑1 (MQ=60)
                          ACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCT                                                                      <  SRR4302537.42549/94‑1 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAA                                                                   <  SRR4302537.487807/94‑1 (MQ=60)
                             GGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAA                                                                   <  SRR4302537.3076462/94‑1 (MQ=60)
                              GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAG                                                                  >  SRR4302537.3864671/1‑94 (MQ=60)
                              GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAG                                                                  <  SRR4302537.951984/94‑1 (MQ=60)
                              GTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAG                                                                  <  SRR4302537.4006587/94‑1 (MQ=60)
                                TTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCG                                                                <  SRR4302537.1657469/94‑1 (MQ=60)
                                TTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCG                                                                >  SRR4302537.5441620/1‑94 (MQ=60)
                                 TTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGA                                                               >  SRR4302537.1601425/1‑94 (MQ=60)
                                    AAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAT                                                            <  SRR4302537.2370597/94‑1 (MQ=60)
                                    AAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGAT                                                            >  SRR4302537.4875242/1‑94 (MQ=60)
                                     AGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCCGAAGCGAGATT                                                           >  SRR4302537.55834/1‑94 (MQ=60)
                                        CATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAA                                                        <  SRR4302537.273377/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                       <  SRR4302537.579655/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                       <  SRR4302537.2828824/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                       >  SRR4302537.4193013/1‑94 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                       <  SRR4302537.1927007/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                       <  SRR4302537.1130391/94‑1 (MQ=60)
                                         ATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAAC                                                       <  SRR4302537.2832466/94‑1 (MQ=60)
                                          TCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACG                                                      <  SRR4302537.2288819/94‑1 (MQ=60)
                                           CCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGC                                                     >  SRR4302537.3333613/1‑94 (MQ=60)
                                            CAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCC                                                    >  SRR4302537.5579187/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGCAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                   >  SRR4302537.4927215/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                   >  SRR4302537.3607108/1‑94 (MQ=60)
                                             AGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCA                                                   >  SRR4302537.4318425/1‑94 (MQ=60)
                                              GACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAC                                                  <  SRR4302537.3333983/94‑1 (MQ=60)
                                              GACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAC                                                  >  SRR4302537.6176736/1‑94 (MQ=60)
                                              GACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCAC                                                  <  SRR4302537.5250984/94‑1 (MQ=60)
                                               ACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACC                                                 <  SRR4302537.4685454/94‑1 (MQ=60)
                                                CGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCT                                                <  SRR4302537.2902325/94‑1 (MQ=60)
                                                 GAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTT                                               >  SRR4302537.5311350/1‑94 (MQ=60)
                                                  AACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTC                                              >  SRR4302537.5044470/1‑94 (MQ=60)
                                                  AACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTC                                              <  SRR4302537.3822982/94‑1 (MQ=60)
                                                  AACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTC                                              >  SRR4302537.6399860/1‑94 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                             <  SRR4302537.1262890/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                             <  SRR4302537.1379285/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                             <  SRR4302537.1291609/94‑1 (MQ=60)
                                                   ACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCT                                             <  SRR4302537.5103268/94‑1 (MQ=60)
                                                    CGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTG                                            >  SRR4302537.5101694/1‑94 (MQ=60)
                                                    CGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTG                                            >  SRR4302537.1652831/1‑94 (MQ=60)
                                                    CGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTG                                            >  SRR4302537.2935266/1‑94 (MQ=60)
                                                     GATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGC                                           >  SRR4302537.2365972/1‑94 (MQ=60)
                                                      ATGCCTACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGTATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                          >  SRR4302537.1335021/1‑94 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                          <  SRR4302537.152722/94‑1 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                          <  SRR4302537.214661/94‑1 (MQ=60)
                                                      ATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCT                                          <  SRR4302537.2475756/94‑1 (MQ=60)
                                                       TGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTG                                         >  SRR4302537.5623027/1‑94 (MQ=60)
                                                        GCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGA                                        >  SRR4302537.503475/1‑94 (MQ=60)
                                                        GCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGA                                        <  SRR4302537.4440644/94‑1 (MQ=60)
                                                        GCCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGA                                        >  SRR4302537.3938250/1‑94 (MQ=60)
                                                         CCGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGAC                                       >  SRR4302537.578041/1‑94 (MQ=60)
                                                          CGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC                                      >  SRR4302537.5348901/1‑94 (MQ=60)
                                                          CGACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACC                                      <  SRR4302537.6266020/94‑1 (MQ=60)
                                                           GACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCG                                     >  SRR4302537.2430154/1‑94 (MQ=60)
                                                           GACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCG                                     >  SRR4302537.2554597/1‑94 (MQ=60)
                                                           GACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCG                                     >  SRR4302537.2566720/1‑94 (MQ=60)
                                                            ACTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGT                                    <  SRR4302537.5539135/94‑1 (MQ=60)
                                                             CTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTT                                   >  SRR4302537.4110033/1‑94 (MQ=60)
                                                             CTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTT                                   >  SRR4302537.2187156/1‑94 (MQ=60)
                                                             CTTTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTT                                   <  SRR4302537.4895349/94‑1 (MQ=60)
                                                               TTATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTT                                 >  SRR4302537.3894871/1‑94 (MQ=60)
                                                                TATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTC                                >  SRR4302537.2756885/1‑94 (MQ=60)
                                                                TATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTC                                >  SRR4302537.868695/1‑94 (MQ=60)
                                                                TATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTC                                >  SRR4302537.3888591/1‑94 (MQ=60)
                                                                 ATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCG                               <  SRR4302537.2920810/94‑1 (MQ=60)
                                                                 ATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCG                               >  SRR4302537.4425234/1‑94 (MQ=60)
                                                                 ATCTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCG                               <  SRR4302537.6160614/94‑1 (MQ=60)
                                                                   CTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAT                             <  SRR4302537.4207020/94‑1 (MQ=60)
                                                                   CTCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGAT                             >  SRR4302537.1804563/1‑94 (MQ=60)
                                                                    TCCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATG                            <  SRR4302537.1244966/94‑1 (MQ=60)
                                                                     CCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGT                           <  SRR4302537.2814480/94‑1 (MQ=60)
                                                                     CCCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGT                           <  SRR4302537.2642173/94‑1 (MQ=60)
                                                                      CCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTA                          <  SRR4302537.1916146/94‑1 (MQ=60)
                                                                      CCGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTA                          <  SRR4302537.429851/94‑1 (MQ=60)
                                                                       CGCGACATAAAACACGCCGCCANGACGGATAAAGAAANTCCCTTCACCTGANGCGAGATTTAANGCCACCTTCTNCTGACNGNTTNCNANGNAC                         >  SRR4302537.1117829/1‑94 (MQ=60)
                                                                       CGCGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTAC                         <  SRR4302537.1564023/94‑1 (MQ=60)
                                                                         CGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAA                       <  SRR4302537.5013680/94‑1 (MQ=60)
                                                                         CGACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAA                       <  SRR4302537.4374040/94‑1 (MQ=60)
                                                                          GACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAA                      <  SRR4302537.1259352/94‑1 (MQ=60)
                                                                           ACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC                     <  SRR4302537.6172202/94‑1 (MQ=60)
                                                                           ACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC                     <  SRR4302537.1061678/94‑1 (MQ=60)
                                                                           ACATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAAC                     <  SRR4302537.1137361/94‑1 (MQ=60)
                                                                            CATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC                    <  SRR4302537.404355/94‑1 (MQ=60)
                                                                            CATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACC                    >  SRR4302537.5959667/1‑94 (MQ=60)
                                                                             ATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                   <  SRR4302537.336444/94‑1 (MQ=60)
                                                                             ATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                   >  SRR4302537.13890/1‑94 (MQ=60)
                                                                             ATAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCG                   >  SRR4302537.5681374/1‑94 (MQ=60)
                                                                              TAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGA                  <  SRR4302537.2813807/94‑1 (MQ=60)
                                                                              TAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGA                  >  SRR4302537.279041/1‑94 (MQ=60)
                                                                              TAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGA                  >  SRR4302537.1912571/1‑94 (MQ=60)
                                                                              TAAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGA                  <  SRR4302537.2151722/94‑1 (MQ=60)
                                                                               AAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAG                 >  SRR4302537.4324666/1‑94 (MQ=60)
                                                                               AAAACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAG                 <  SRR4302537.3868155/94‑1 (MQ=60)
                                                                                 AACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCG               <  SRR4302537.1666830/94‑1 (MQ=60)
                                                                                 AACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCG               >  SRR4302537.3054132/1‑94 (MQ=60)
                                                                                 AACACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCG               >  SRR4302537.1418810/1‑94 (MQ=60)
                                                                                   CACGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGC             >  SRR4302537.6030664/1‑94 (MQ=60)
                                                                                     CGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGC           >  SRR4302537.3280512/1‑94 (MQ=60)
                                                                                     CGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGC           <  SRR4302537.387014/94‑1 (MQ=60)
                                                                                     CGCCGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGC           >  SRR4302537.4335666/1‑94 (MQ=60)
                                                                                        CGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATA        >  SRR4302537.4252275/1‑94 (MQ=60)
                                                                                        CGCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATA        <  SRR4302537.5183154/94‑1 (MQ=60)
                                                                                         GCCAGGACGGATAAAGAAATTCCCTTCGCCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG       <  SRR4302537.1954845/94‑1 (MQ=60)
                                                                                         GCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGTATAG       >  SRR4302537.4088689/1‑94 (MQ=60)
                                                                                         GCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG       >  SRR4302537.6136836/1‑94 (MQ=60)
                                                                                         GCCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAG       >  SRR4302537.1918613/1‑94 (MQ=60)
                                                                                          CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGC      >  SRR4302537.1726838/1‑94 (MQ=60)
                                                                                          CCAGGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGC      >  SRR4302537.6227428/1‑94 (MQ=60)
                                                                                           cagGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCT     <  SRR4302537.833778/91‑1 (MQ=60)
                                                                                           cagGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCT     <  SRR4302537.377861/91‑1 (MQ=60)
                                                                                            agGACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTT    <  SRR4302537.6309071/92‑1 (MQ=60)
                                                                                              GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTC  <  SRR4302537.5494330/94‑1 (MQ=60)
                                                                                              |                                                                                             
GACTGCACCGCAAACTGAATCTCTTTACTGGTTTTGAAGGCATCCAGACGAACGATGCCGACTTTATCTCCCGCGACATAAAACACGCCGCCA‑GACGGATAAAGAAATTCCCTTCACCTGAAGCGAGATTTAACGCCACCTTCTGCTGACCGTTTTCGATGTACAAACCGAGCGGCGCATAGCTTTC  >  NC_000913/3998197‑3998383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑