Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,421 |
+T |
coding (504/516 nt) |
b4555 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,421 | 1 | . | T | 100.0%
| 328.3
/ NA
| 93 | L168F (TTG→TTT) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (39/54); total (39/54) |
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCT > NC_000913/4008346‑4008503
|
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt > 2:5403718/1‑93 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt < 2:3787930/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt < 2:2774904/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt < 1:4486244/93‑1 (MQ=255)
tCTGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tt > 2:869479/1‑93 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg < 2:464874/93‑3 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 2:6138832/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:6016849/1‑91 (MQ=255)
tGGAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttg > 1:6016825/1‑91 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg < 1:3506191/93‑4 (MQ=255)
ggAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttgg > 2:3320361/1‑90 (MQ=255)
gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttggt < 2:3483846/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttggt < 2:1252666/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttggt < 2:4040145/93‑5 (MQ=255)
gAAGTGATGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑tttggg > 2:2507347/1‑89 (MQ=255)
aTGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACggg < 1:4940357/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 1:6405431/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:1394688/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa < 2:5796766/93‑1 (MQ=255)
tGGCGGGCGGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGa > 1:2083031/1‑93 (MQ=255)
ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 1:303919/93‑1 (MQ=255)
ggcgggcgGCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGAt < 2:3310173/93‑1 (MQ=255)
cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGATGGGATGa > 1:4832777/1‑93 (MQ=255)
cgggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGa < 2:5573378/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 2:3446146/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 2:3173286/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 1:4711400/93‑1 (MQ=255)
gggcggCGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGaa < 2:3417995/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 1:4031251/93‑1 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac > 1:6362609/1‑93 (MQ=255)
ggcggcGTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAac < 1:3439681/93‑1 (MQ=255)
cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga < 1:1316320/93‑1 (MQ=255)
cggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacga < 1:4625671/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 1:1552969/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac < 2:763229/93‑1 (MQ=255)
ggcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgac > 2:1044481/1‑93 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 2:4992638/1‑93 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg < 2:4952602/93‑1 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 2:5946770/1‑93 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 1:1426432/1‑93 (MQ=255)
gcgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAacgacg > 1:6033668/1‑93 (MQ=255)
cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc > 1:1552563/1‑93 (MQ=255)
cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc < 2:5168728/93‑1 (MQ=255)
cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc < 1:426660/93‑1 (MQ=255)
cgTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGc < 2:4958176/93‑1 (MQ=255)
gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGcc > 2:2256472/1‑93 (MQ=255)
ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGa < 1:6062415/89‑1 (MQ=255)
tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaa > 2:5083323/4‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGaaag < 2:2846134/92‑2 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 1:6035252/2‑93 (MQ=255)
aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAt > 2:4617817/2‑93 (MQ=255)
aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATg < 1:5923994/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc < 2:1736980/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc < 1:3789541/93‑1 (MQ=255)
aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGc > 2:5226036/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:82540/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt > 1:2452004/1‑93 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:1120950/93‑1 (MQ=255)
aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:6098058/93‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATggg < 1:5532678/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATggg < 2:3150136/89‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGc > 1:1890430/4‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCa > 2:2729629/3‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCa < 2:2266755/91‑1 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGTAAG‑G‑CTGCATTATGGGCa > 1:3112540/3‑93 (MQ=255)
cgggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCa < 2:2410320/91‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAg < 2:2017840/92‑1 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAg < 2:1036539/92‑1 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGt < 2:4972239/93‑1 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGt < 2:96549/93‑1 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGGG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTg < 2:691933/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTgc < 1:3519216/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTgc < 2:2123975/93‑2 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTgc < 2:4043434/93‑2 (MQ=255)
tACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTgcg > 2:3052832/1‑91 (MQ=255)
gccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCATTGCgcacc > 2:5326394/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCgcacc > 1:6135998/3‑93 (MQ=255)
ccTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCgcacca > 2:1803524/2‑93 (MQ=255)
cTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg > 2:3898226/1‑93 (MQ=255)
cTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg > 2:4671677/1‑93 (MQ=255)
cTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAg > 2:6200664/1‑93 (MQ=255)
tGAAGGATTGTATTGCG‑‑TTTGGTGTCGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 1:6138832/93‑1 (MQ=255)
tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 1:1167811/93‑1 (MQ=255)
tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 1:3290418/1‑93 (MQ=255)
tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 2:784195/93‑1 (MQ=255)
tGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCAAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 2:1938210/1‑93 (MQ=255)
aaGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA‑GTCTGCATTATGGGCAGTGCGCACCAGCGt < 2:5376927/93‑1 (MQ=255)
aGGATTGTATTGCG‑‑TTTGGTGACGGGATGACCGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc < 1:3584364/93‑1 (MQ=255)
aGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc < 2:1668919/93‑1 (MQ=255)
aGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc > 2:2935009/1‑93 (MQ=255)
ggATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt < 2:2787822/93‑1 (MQ=255)
ggATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 1:5150124/1‑93 (MQ=255)
ggATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:5015919/1‑93 (MQ=255)
ggATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:3696911/1‑93 (MQ=255)
|
TCTGGAAGTGATGGCGGGCGGCGTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCT > NC_000913/4008346‑4008503
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCAAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAAGCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGAC > NC_000913/4008371‑4008510
|
caAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAAT > SRR4302537.6076720/3‑94 (MQ=18)
AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGC < SRR4302537.5964645/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT < SRR4302537.3816140/94‑1 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302537.83144/1‑94 (MQ=21)
AAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCT > SRR4302537.2469257/1‑94 (MQ=21)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302537.1128719/94‑1 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTG > SRR4302537.3086211/1‑94 (MQ=23)
AGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTG < SRR4302537.6139961/94‑1 (MQ=23)
GGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGT > SRR4302537.6155501/1‑94 (MQ=25)
catgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGA < SRR4302537.4436875/64‑1 (MQ=42)
catgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGA < SRR4302537.307524/64‑1 (MQ=42)
atgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT > SRR4302537.5413712/30‑94 (MQ=45)
atgcgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGAT < SRR4302537.1350829/65‑1 (MQ=45)
cgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGG > SRR4302537.1785606/27‑94 (MQ=48)
cgctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC > SRR4302537.4279114/27‑94 (MQ=51)
gctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑G < SRR4302537.2809454/69‑1 (MQ=53)
gctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑G > SRR4302537.6097263/26‑94 (MQ=53)
ctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GG > SRR4302537.1414020/25‑94 (MQ=55)
ctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GG < SRR4302537.61936/70‑1 (MQ=55)
ctggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GG > SRR4302537.6098262/25‑94 (MQ=55)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302537.6075178/71‑1 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302537.6491540/71‑1 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG < SRR4302537.6491541/71‑1 (MQ=57)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA < SRR4302537.2289760/73‑1 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GA > SRR4302537.2918606/22‑94 (MQ=56)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑GAA < SRR4302537.3465938/74‑1 (MQ=55)
agcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAA > SRR4302537.6220179/20‑94 (MQ=54)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG < SRR4302537.706654/76‑1 (MQ=53)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG > SRR4302537.219749/19‑94 (MQ=53)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGG‑‑AAAG < SRR4302537.3515312/76‑1 (MQ=53)
cggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaagg < SRR4302537.3353664/77‑7 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc < SRR4302537.2329728/78‑8 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302537.3442692/17‑87 (MQ=57)
ggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggc > SRR4302537.1843874/17‑87 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302537.775492/79‑9 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct > SRR4302537.5735591/16‑86 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct < SRR4302537.5497392/79‑9 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggct > SRR4302537.2380942/16‑86 (MQ=57)
tggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctg < SRR4302537.995395/80‑10 (MQ=57)
ggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGgaaaggctgc < SRR4302537.5215171/81‑11 (MQ=57)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCAT > SRR4302537.2087440/12‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATT > SRR4302537.923093/11‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATT > SRR4302537.5536242/11‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATT > SRR4302537.1498215/11‑94 (MQ=49)
aagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACTCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTA > SRR4302537.1611067/10‑94 (MQ=37)
aagaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTA < SRR4302537.874927/85‑1 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTAT > SRR4302537.3877400/9‑94 (MQ=48)
gaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATG > SRR4302537.5945483/8‑94 (MQ=49)
gaaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATG < SRR4302537.6080847/87‑1 (MQ=49)
aaactgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGG < SRR4302537.2985492/88‑1 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGG < SRR4302537.2846596/94‑1 (MQ=50)
AACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGG < SRR4302537.5909300/94‑1 (MQ=50)
ACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGC < SRR4302537.5570442/94‑1 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGC > SRR4302537.1903568/1‑94 (MQ=53)
ctgGGCTACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGTAAGGCTGCATTATGGGCA > SRR4302537.3134280/4‑94 (MQ=57)
CTACAGCCTGAAGGATTGTATTGCGTTTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGcg < SRR4302537.3544116/94‑3 (MQ=60)
ACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGcgca < SRR4302537.2416802/94‑5 (MQ=60)
ACAGCCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGcgca > SRR4302537.2174283/1‑90 (MQ=60)
agcCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC > SRR4302537.6178180/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC < SRR4302537.736139/91‑1 (MQ=60)
agcCTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACC < SRR4302537.6354651/91‑1 (MQ=60)
C‑CTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAG < SRR4302537.2539279/94‑1 (MQ=60)
CTGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGC > SRR4302537.3313670/1‑94 (MQ=60)
TGAAGGATTGTATTGCG‑‑TTTGGTGTCGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302537.6181042/94‑1 (MQ=46)
TGAAGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302537.1175932/94‑1 (MQ=57)
AGGATTGTATTGCG‑‑TTTGGTGACGGGATGACCGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302537.3609632/94‑1 (MQ=46)
AGGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCT > SRR4302537.5185612/1‑94 (MQ=57)
GGATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTG > SRR4302537.5500461/1‑94 (MQ=60)
GATTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCAGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGA > SRR4302537.3486948/1‑94 (MQ=50)
TTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA > SRR4302537.6207917/1‑94 (MQ=60)
TTGTATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA < SRR4302537.5184688/94‑1 (MQ=60)
T‑ATTGCG‑‑TTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302537.2462065/1‑94 (MQ=60)
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TCAAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCG‑‑TT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGG‑‑AAAGCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGAC > NC_000913/4008371‑4008510
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
