Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,062,416	A→G	W311R (TGG→CGG)	b3876 ←	putative permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,062,416	0	A	G	99.6%	970.7 / NA	276	W311R (TGG→CGG)	b3876	putative permease
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (135/139); minor base C (1/0); total (136/140)
Fisher's exact test for biased strand distribution p-value = 4.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 292 total aligned reads displayed.

AGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCACAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCA  >  NC_000913/4062326‑4062505

  gCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGc                                                                                       >  1:1881680/1‑93 (MQ=255)

     gTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCgcagcatc                                                                                    >  2:1140420/1‑91 (MQ=255)

     gTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCAcc                                                                                    <  2:5423/93‑1 (MQ=255)

      tGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCa                                                                                   <  1:5066586/93‑1 (MQ=255)

      tGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCa                                                                                   >  1:3294177/1‑93 (MQ=255)

       gCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCAt                                                                                  <  2:2956064/93‑1 (MQ=255)

         cAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgc                                                                                >  1:550216/1‑93 (MQ=255)

          aaaaaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgcc                                                                               >  2:3883516/1‑93 (MQ=255)

          aaaaaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgcc                                                                               <  1:1935752/93‑1 (MQ=255)

          aaaaaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgcc                                                                               <  2:3778776/93‑1 (MQ=255)

           aaaaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgcca                                                                              <  1:1156383/93‑1 (MQ=255)

           aaaaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgcca                                                                              >  1:4670710/1‑93 (MQ=255)

           aaaaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgcca                                                                              >  2:3447331/1‑93 (MQ=255)

             aaaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgccagc                                                                            <  1:6121364/93‑1 (MQ=255)

              aaGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgccagcc                                                                           <  1:1142922/93‑1 (MQ=255)

               aGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATgccagcca                                                                          <  2:1898871/93‑1 (MQ=255)

                ggCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGccagccag                                                                         <  2:1994071/93‑1 (MQ=255)

                 gCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGa                                                                        <  1:5722196/93‑1 (MQ=255)

                   gACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATa                                                                      <  2:2583024/93‑1 (MQ=255)

                     cacaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATaaa                                                                    >  2:6048323/1‑93 (MQ=255)

                     cacaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATaaa                                                                    <  2:5207280/93‑1 (MQ=255)

                     cacaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATaaa                                                                    >  2:1792338/1‑93 (MQ=255)

                     cacaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATaaa                                                                    <  2:1686735/93‑1 (MQ=255)

                     cacaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATaaa                                                                    >  2:1597820/1‑93 (MQ=255)

                      acaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAAc                                                                   <  1:4876168/93‑1 (MQ=255)

                      acaAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAAc                                                                   <  1:859754/93‑1 (MQ=255)

                       caAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAAcc                                                                  >  2:3182197/1‑93 (MQ=255)

                       caAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAAcc                                                                  <  1:4530938/93‑1 (MQ=255)

                        aaGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCt                                                                 <  2:772101/93‑1 (MQ=255)

                        aaGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCt                                                                 >  2:2686064/1‑93 (MQ=255)

                          gagaACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGt                                                               >  1:21410/1‑93 (MQ=255)

                          gagaACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGt                                                               >  1:3179977/1‑93 (MQ=255)

                             aaCATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATCTCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGtttt                                                            <  1:4188855/93‑1 (MQ=255)

                              aCATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGttttt                                                           >  1:3394446/1‑93 (MQ=255)

                                 tGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTAc                                                        <  1:580531/93‑1 (MQ=255)

                                  gACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTAcc                                                       <  1:3452435/93‑1 (MQ=255)

                                  gACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTAcc                                                       >  1:1027651/1‑93 (MQ=255)

                                  gACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTAcc                                                       <  1:130819/93‑1 (MQ=255)

                                   gcGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCa                                                      <  1:1672804/92‑1 (MQ=255)

                                     gAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCaaa                                                    >  1:354809/1‑93 (MQ=255)

                                       aaGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAAc                                                  <  1:6275625/93‑1 (MQ=255)

                                        aGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACa                                                 <  2:2129460/93‑1 (MQ=255)

                                         gTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACAt                                                >  2:275094/1‑93 (MQ=255)

                                          tGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACAtt                                               <  1:5024044/93‑1 (MQ=255)

                                           gAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACAttt                                              <  2:4922003/93‑1 (MQ=255)

                                           gAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACAttt                                              <  2:1370416/93‑1 (MQ=255)

                                              agagTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTAc                                           <  2:5363963/93‑1 (MQ=255)

                                              agagTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTAc                                           >  2:3018388/1‑93 (MQ=255)

                                               gagTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACa                                          >  1:4741454/1‑93 (MQ=255)

                                               gagTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACa                                          >  2:2827717/1‑93 (MQ=255)

                                                 gTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGt                                        >  2:1332137/1‑93 (MQ=255)

                                                 gTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGt                                        >  1:4039148/1‑93 (MQ=255)

                                                  ttACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGtt                                       >  2:466183/1‑93 (MQ=255)

                                                  ttACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGtt                                       >  2:4533699/1‑93 (MQ=255)

                                                   tACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTa                                      <  2:1931904/93‑1 (MQ=255)

                                                    aCTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTaa                                     <  1:986524/93‑1 (MQ=255)

                                                     cTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAt                                    >  1:4442273/1‑93 (MQ=255)

                                                     cTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAt                                    >  2:2735166/1‑93 (MQ=255)

                                                      ttCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATg                                   >  1:3968881/1‑93 (MQ=255)

                                                      ttCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATg                                   >  1:6093367/1‑93 (MQ=255)

                                                      ttCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATg                                   >  1:1732396/1‑93 (MQ=255)

                                                       tCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATgg                                  >  2:6332677/1‑93 (MQ=255)

                                                        ccccAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGc                                 <  1:3732098/93‑1 (MQ=255)

                                                         cccAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCa                                <  1:230198/93‑1 (MQ=255)

                                                         cccAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCa                                <  1:56534/93‑1 (MQ=255)

                                                           cAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCAcc                              >  2:2367559/1‑93 (MQ=255)

                                                            aGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCa                             <  1:1214225/93‑1 (MQ=255)

                                                            aGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCa                             <  2:2286532/93‑1 (MQ=255)

                                                             gAAATAAGTCAGTATATCGCCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAg                            <  1:2438095/93‑1 (MQ=255)

                                                              aaaTAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCact                           <  1:2049355/93‑3 (MQ=255)

                                                               aataatTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTa                          <  2:4397468/93‑1 (MQ=255)

                                                                  aatTCAGTACATCCCCCACCGACCGCATCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATa                       <  1:5153183/93‑1 (MQ=255)

                                                                    ttCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACg                     <  1:2726401/93‑1 (MQ=255)

                                                                      cAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGcc                   >  1:1506248/1‑93 (MQ=255)

                                                                      cAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGcc                   <  1:3866091/93‑1 (MQ=255)

                                                                       aGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCg                  >  2:3619994/1‑93 (MQ=255)

                                                                        gTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGa                 <  1:2757543/93‑1 (MQ=255)

                                                                        gTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGa                 >  2:3922349/1‑93 (MQ=255)

                                                                        gTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGa                 >  2:326769/1‑93 (MQ=255)

                                                                        gTATATCACCAACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGa                 <  2:6228859/93‑1 (MQ=255)

                                                                         tataTCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGAt                <  2:2314623/93‑1 (MQ=255)

                                                                           tatCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGa              <  1:767157/93‑1 (MQ=255)

                                                                           tatCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGa              <  2:5986264/93‑1 (MQ=255)

                                                                           tatCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGa              <  1:5223528/93‑1 (MQ=255)

                                                                           tatCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGa              <  1:5891365/93‑1 (MQ=255)

                                                                            atCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAg             <  2:4077909/93‑1 (MQ=255)

                                                                             tCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGcc                   >  1:672743/1‑86 (MQ=255)

                                                                             tCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGcc                   <  2:672743/86‑1 (MQ=255)

                                                                              cacccaccGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGa           <  1:562157/93‑1 (MQ=255)

                                                                              cacccaccGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGa           <  1:5357827/93‑1 (MQ=255)

                                                                              cacccaccGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGa           <  1:2080626/93‑1 (MQ=255)

                                                                               acccaccGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGAt          >  2:1492013/1‑93 (MQ=255)

                                                                               acccaccGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGAt          >  2:5093663/1‑93 (MQ=255)

                                                                                 ccaccGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGc        >  1:3008704/1‑93 (MQ=255)

                                                                                   accGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCAt      >  1:1790601/1‑93 (MQ=255)

                                                                                    ccgcccgcAGCACCATGCCAGCCAGATAATCCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATc     >  1:266127/1‑93 (MQ=255)

                                                                                      gCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATccc   >  2:3528871/1‑93 (MQ=255)

                                                                                       cccGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCa  <  2:5646204/93‑1 (MQ=255)

                                                                                       cccGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCa  <  1:4329092/93‑1 (MQ=255)

                                                                                       cccGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCa  >  1:1055857/1‑93 (MQ=255)

AGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCACAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCA  >  NC_000913/4062326‑4062505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAAAGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCACAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCATACT  >  NC_000913/4062323‑4062509

CAAAGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCG                                                                                               >  SRR4302537.4193850/1‑94 (MQ=60)

   AGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAG                                                                                            >  SRR4302537.1089847/1‑94 (MQ=60)

   AGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAG                                                                                            <  SRR4302537.1710231/94‑1 (MQ=60)

    GGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGC                                                                                           >  SRR4302537.1052089/1‑94 (MQ=60)

    GGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGC                                                                                           >  SRR4302537.1662399/1‑94 (MQ=60)

    GGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGC                                                                                           >  SRR4302537.1894766/1‑94 (MQ=60)

       CGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACGCCCCGCAGCACC                                                                                        >  SRR4302537.403088/1‑94 (MQ=60)

       CGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACC                                                                                        <  SRR4302537.2275958/94‑1 (MQ=60)

       CGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTAAGTATATCACCCACCGCCCGCAGCACC                                                                                        >  SRR4302537.1264099/1‑94 (MQ=60)

        GTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCA                                                                                       >  SRR4302537.3317462/1‑94 (MQ=60)

         TGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCAT                                                                                      <  SRR4302537.5101463/94‑1 (MQ=60)

          GCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATG                                                                                     >  SRR4302537.3823149/1‑94 (MQ=60)

           CCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGC                                                                                    >  SRR4302537.554004/1‑94 (MQ=60)

           CCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGC                                                                                    >  SRR4302537.19149/1‑94 (MQ=60)

           CCAAAAAACGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGGATATCACCCACCGCCCCCAGCACCATCC                                                                                    >  SRR4302537.5788020/1‑94 (MQ=60)

             AAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCA                                                                                  <  SRR4302537.1949214/94‑1 (MQ=60)

             AAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCA                                                                                  >  SRR4302537.4703026/1‑94 (MQ=60)

             AAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCA                                                                                  <  SRR4302537.6034881/94‑1 (MQ=60)

             AAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGACCGCAGCACCATGCCA                                                                                  >  SRR4302537.5373026/1‑94 (MQ=60)

              AAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAG                                                                                 <  SRR4302537.1155486/94‑1 (MQ=60)

              AAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAG                                                                                 <  SRR4302537.552284/94‑1 (MQ=60)

              AAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAG                                                                                 <  SRR4302537.1164429/94‑1 (MQ=60)

               AAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGC                                                                                >  SRR4302537.6162971/1‑94 (MQ=60)

               AAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGC                                                                                <  SRR4302537.354721/94‑1 (MQ=60)

               AAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACAATGCCAGC                                                                                <  SRR4302537.2165057/94‑1 (MQ=60)

                AAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCC                                                                               <  SRR4302537.6163441/94‑1 (MQ=60)

                 AAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCA                                                                              <  SRR4302537.1150868/94‑1 (MQ=60)

                  AGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCCCCCACCGCCCGCAGCACCATGCCAGCCAG                                                                             <  SRR4302537.4571693/94‑1 (MQ=60)

                    GCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGAT                                                                           <  SRR4302537.5761366/94‑1 (MQ=60)

                     CGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATA                                                                          <  SRR4302537.383982/94‑1 (MQ=60)

                     CGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATA                                                                          >  SRR4302537.1933106/1‑94 (MQ=60)

                     CGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATA                                                                          <  SRR4302537.992427/94‑1 (MQ=60)

                      GACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAA                                                                         <  SRR4302537.4227817/94‑1 (MQ=60)

                      GACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAA                                                                         >  SRR4302537.2594582/1‑94 (MQ=60)

                       ACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAA                                                                        <  SRR4302537.3953446/94‑1 (MQ=60)

                        CACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAAC                                                                       >  SRR4302537.2904012/1‑94 (MQ=60)

                         ACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACC                                                                      <  SRR4302537.865653/94‑1 (MQ=60)

                         ACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACC                                                                      <  SRR4302537.4909822/94‑1 (MQ=60)

                          CATGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCCCCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCT                                                                     <  SRR4302537.3432647/94‑1 (MQ=60)

                          CAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCT                                                                     <  SRR4302537.4562313/94‑1 (MQ=60)

                           AAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTG                                                                    >  SRR4302537.1763207/1‑94 (MQ=60)

                            AGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGT                                                                   >  SRR4302537.4497213/1‑94 (MQ=60)

                            AGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGT                                                                   >  SRR4302537.21574/1‑94 (MQ=60)

                            AGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGT                                                                   >  SRR4302537.1826735/1‑94 (MQ=60)

                            AGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGT                                                                   >  SRR4302537.3202326/1‑94 (MQ=60)

                             GAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTT                                                                  <  SRR4302537.3211421/94‑1 (MQ=60)

                              AGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTT                                                                 <  SRR4302537.1201209/94‑1 (MQ=60)

                               GAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCGCCATGCCAGCCAGATAAACCTGTTTT                                                                <  SRR4302537.4116628/94‑1 (MQ=60)

                               GAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTT                                                                <  SRR4302537.6147365/94‑1 (MQ=60)

                                AACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATCTCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTT                                                               <  SRR4302537.4218109/94‑1 (MQ=60)

                                AACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTT                                                               <  SRR4302537.2024530/94‑1 (MQ=60)

                                AACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTT                                                               >  SRR4302537.3418490/1‑94 (MQ=60)

                                 ACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTT                                                              <  SRR4302537.563135/94‑1 (MQ=60)

                                 ACATGACGAAAGTGAAAGAGTTACTTCCCCAAAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTT                                                              <  SRR4302537.2756125/94‑1 (MQ=60)

                                   ATGACGAAAGTGAAGGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCACCCAGATAAACCTGTTTTTTAC                                                            <  SRR4302537.3177077/94‑1 (MQ=60)

                                   ATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTAC                                                            >  SRR4302537.402184/1‑94 (MQ=60)

                                    TGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACC                                                           <  SRR4302537.584508/94‑1 (MQ=60)

                                    TGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACC                                                           >  SRR4302537.1034725/1‑94 (MQ=60)

                                     GACGAAAGTGAAAGAGTTACTTTCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCA                                                          >  SRR4302537.1995580/1‑94 (MQ=60)

                                     GACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCA                                                          <  SRR4302537.131745/94‑1 (MQ=60)

                                     GACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCA                                                          <  SRR4302537.3613514/94‑1 (MQ=60)

                                     GACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCA                                                          <  SRR4302537.1784562/94‑1 (MQ=60)

                                     GACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCA                                                          <  SRR4302537.3476851/94‑1 (MQ=60)

                                      GCGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAA                                                         <  SRR4302537.1684516/94‑1 (MQ=60)

                                      ACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAA                                                         <  SRR4302537.2124731/94‑1 (MQ=60)

                                       CGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAA                                                        >  SRR4302537.357279/1‑94 (MQ=60)

                                        GAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAA                                                       <  SRR4302537.685739/94‑1 (MQ=60)

                                         AAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAAC                                                      <  SRR4302537.3403945/94‑1 (MQ=60)

                                          AAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACA                                                     <  SRR4302537.6318684/94‑1 (MQ=60)

                                           AGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACAT                                                    >  SRR4302537.2367575/1‑94 (MQ=60)

                                           AGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACAT                                                    <  SRR4302537.5757199/94‑1 (MQ=60)

                                            GTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATT                                                   >  SRR4302537.2694896/1‑94 (MQ=60)

                                            GTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATT                                                   >  SRR4302537.473028/1‑94 (MQ=60)

                                            GTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATT                                                   >  SRR4302537.2438035/1‑94 (MQ=60)

                                            GTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATT                                                   <  SRR4302537.5661628/94‑1 (MQ=60)

                                             TGGAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTT                                                  >  SRR4302537.3431876/1‑94 (MQ=60)

                                             TGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTT                                                  <  SRR4302537.5058649/94‑1 (MQ=60)

                                             TGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTT                                                  >  SRR4302537.860545/1‑94 (MQ=60)

                                             TGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTT                                                  >  SRR4302537.1190406/1‑94 (MQ=60)

                                               AAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTA                                                <  SRR4302537.5244041/94‑1 (MQ=60)

                                                 AGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACA                                              <  SRR4302537.5270919/94‑1 (MQ=60)

                                                 AGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACA                                              >  SRR4302537.4774223/1‑94 (MQ=60)

                                                  GAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAG                                             <  SRR4302537.4409463/94‑1 (MQ=60)

                                                  GAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAG                                             <  SRR4302537.5996158/94‑1 (MQ=60)

                                                   AGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGT                                            >  SRR4302537.4067405/1‑94 (MQ=60)

                                                   AGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGT                                            >  SRR4302537.1458529/1‑94 (MQ=60)

                                                   AGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGT                                            >  SRR4302537.581951/1‑94 (MQ=60)

                                                    GTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTT                                           >  SRR4302537.4596441/1‑94 (MQ=60)

                                                     TTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTA                                          >  SRR4302537.2946299/1‑94 (MQ=60)

                                                      TACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAA                                         >  SRR4302537.4709691/1‑94 (MQ=60)

                                                       TCTTCCCCAGAAATAATTCAGTATATCGCCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAT                                        <  SRR4302537.1716127/94‑1 (MQ=60)

                                                       ACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAT                                        <  SRR4302537.5925869/94‑1 (MQ=60)

                                                       ACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAT                                        <  SRR4302537.993335/94‑1 (MQ=60)

                                                       ACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAT                                        >  SRR4302537.4472953/1‑94 (MQ=60)

                                                       ACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAAT                                        >  SRR4302537.4516757/1‑94 (MQ=60)

                                                        CTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATG                                       >  SRR4302537.1744484/1‑94 (MQ=60)

                                                        CTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATG                                       >  SRR4302537.3996652/1‑94 (MQ=60)

                                                        CTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATG                                       >  SRR4302537.6135236/1‑94 (MQ=60)

                                                         TTCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGG                                      >  SRR4302537.3528910/1‑94 (MQ=60)

                                                          TCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGC                                     >  SRR4302537.4200418/1‑94 (MQ=60)

                                                          TCCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGA                                     >  SRR4302537.5870297/1‑94 (MQ=60)

                                                           CCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCA                                    <  SRR4302537.1133464/94‑1 (MQ=60)

                                                           CCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCA                                    <  SRR4302537.3758315/94‑1 (MQ=60)

                                                           CCCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCA                                    >  SRR4302537.1304377/1‑94 (MQ=60)

                                                            CCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCAC                                   <  SRR4302537.56954/94‑1 (MQ=60)

                                                            CCCAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCAC                                   <  SRR4302537.231826/94‑1 (MQ=60)

                                                              CAGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCA                                 <  SRR4302537.2553101/94‑1 (MQ=60)

                                                               AGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCCAAACATTTTACAGTTAATGGCACCAG                                >  SRR4302537.3131795/1‑94 (MQ=60)

                                                               AGAAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAG                                <  SRR4302537.1222674/94‑1 (MQ=60)

                                                                GAAATAAGTCAGTATATCGCCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGT                               <  SRR4302537.2455269/94‑1 (MQ=60)

                                                                 AAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTA                              >  SRR4302537.5741969/1‑94 (MQ=60)

                                                                 AAATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCACTA                              <  SRR4302537.2063727/94‑1 (MQ=60)

                                                                  AATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAA                             >  SRR4302537.136126/1‑94 (MQ=60)

                                                                   ATAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAAT                            <  SRR4302537.4788288/94‑1 (MQ=60)

                                                                    TAATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATA                           >  SRR4302537.2697569/1‑94 (MQ=60)

                                                                     AATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATAC                          >  SRR4302537.5134438/1‑94 (MQ=60)

                                                                     AATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATAC                          <  SRR4302537.5188690/94‑1 (MQ=60)

                                                                     AATTCAGTACATCCCCCACCGACCGCATCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATAC                          <  SRR4302537.5188691/94‑1 (MQ=60)

                                                                      ATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACG                         >  SRR4302537.2145214/1‑94 (MQ=60)

                                                                      ATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACG                         <  SRR4302537.4844664/94‑1 (MQ=60)

                                                                      ATTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACG                         <  SRR4302537.4925955/94‑1 (MQ=60)

                                                                       TTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGC                        <  SRR4302537.2745439/94‑1 (MQ=60)

                                                                       TTCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGC                        <  SRR4302537.5552863/94‑1 (MQ=60)

                                                                        TCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCC                       <  SRR4302537.5221631/94‑1 (MQ=60)

                                                                        TCAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCC                       >  SRR4302537.1516757/1‑94 (MQ=60)

                                                                         CAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCG                      <  SRR4302537.3893147/94‑1 (MQ=60)

                                                                         CAGTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCG                      >  SRR4302537.5430102/1‑94 (MQ=60)

                                                                           GTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGAT                    >  SRR4302537.4264484/1‑94 (MQ=60)

                                                                           GTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGAT                    <  SRR4302537.2776792/94‑1 (MQ=60)

                                                                           GTATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGAT                    >  SRR4302537.3334790/1‑94 (MQ=60)

                                                                           GGATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGTCACCAGTAATACGCCGAG                    >  SRR4302537.5045217/1‑94 (MQ=60)

                                                                            TATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATG                   >  SRR4302537.2072197/1‑94 (MQ=60)

                                                                            TATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATG                   <  SRR4302537.509450/94‑1 (MQ=60)

                                                                            TATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATG                   >  SRR4302537.6258118/1‑94 (MQ=60)

                                                                             ATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGA                  <  SRR4302537.1812819/94‑1 (MQ=60)

                                                                             ATATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGA                  >  SRR4302537.1565670/1‑94 (MQ=60)

                                                                              TATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAG                 <  SRR4302537.79418/94‑1 (MQ=60)

                                                                              TATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAG                 <  SRR4302537.772408/94‑1 (MQ=60)

                                                                              TATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAG                 <  SRR4302537.5931788/94‑1 (MQ=60)

                                                                              TATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAG                 <  SRR4302537.5259451/94‑1 (MQ=60)

                                                                               ATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGAcggaa                >  SRR4302537.677347/1‑89 (MQ=60)

                                                                               ATCACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGG                >  SRR4302537.6310616/1‑94 (MQ=60)

                                                                                 CACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGAT              <  SRR4302537.2095279/94‑1 (MQ=60)

                                                                                 CACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGAT              <  SRR4302537.566025/94‑1 (MQ=60)

                                                                                 CACCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGAT              <  SRR4302537.5394521/94‑1 (MQ=60)

                                                                                   CCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGC            >  SRR4302537.3029646/1‑94 (MQ=60)

                                                                                   CCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGC            >  SRR4302537.915416/1‑94 (MQ=60)

                                                                                   CCCACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGC            >  SRR4302537.692163/1‑94 (MQ=60)

                                                                                     CACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCAT          >  SRR4302537.5689499/1‑94 (MQ=60)

                                                                                     CACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCAT          <  SRR4302537.3269426/94‑1 (MQ=60)

                                                                                     CACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCAT          >  SRR4302537.1803104/1‑94 (MQ=60)

                                                                                      ACCGCCCGCAGCACCATGCCAGCCAGATAATCCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATC         >  SRR4302537.267998/1‑94 (MQ=60)

                                                                                      ACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATC         >  SRR4302537.4389836/1‑94 (MQ=60)

                                                                                      ACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATC         >  SRR4302537.6470155/1‑94 (MQ=60)

                                                                                      ACCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATC         >  SRR4302537.1152795/1‑94 (MQ=60)

                                                                                       CCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCC        >  SRR4302537.276928/1‑94 (MQ=60)

                                                                                       CCGCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCC        <  SRR4302537.3989322/94‑1 (MQ=60)

                                                                                         GCCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCA      >  SRR4302537.1063141/1‑94 (MQ=60)

                                                                                          CCCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCAT     <  SRR4302537.4359173/94‑1 (MQ=60)

                                                                                           CCGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCATA    >  SRR4302537.315335/1‑94 (MQ=60)

                                                                                            CGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCATAC   >  SRR4302537.4502839/1‑94 (MQ=60)

                                                                                            CGCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCATAC   >  SRR4302537.54551/1‑94 (MQ=60)

                                                                                             GCAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCATACT  <  SRR4302537.1575726/94‑1 (MQ=60)

CAAAGGCCGTGCCAAAAAAGGCGACACAAGAGAACATGACGAAAGTGAAAGAGTTACTTCCCCAGAAATAATTCAGTATATCACCCACCGCCCACAGCACCATGCCAGCCAGATAAACCTGTTTTTTACCAAAACATTTTACAGTTAATGGCACCAGTAATACGCCGATGAGGATGCATCCCATACT  >  NC_000913/4062323‑4062509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`