Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,070,656	T→C	M166V (ATG→GTG)	yihU ←	putative dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,070,656	0	T	C	99.6%	761.2 / ‑4.6	223	M166V (ATG→GTG)	yihU	putative dehydrogenase
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (132/90); total (133/90)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.20e-01

Only 100 of 233 total aligned reads displayed.

TCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCATGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCA  >  NC_000913/4070566‑4070745

tCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGAGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACCCGGATCCCCACGc                                                                                         >  1:205115/1‑93 (MQ=255)

 cAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGcc                                                                                        <  1:283824/93‑1 (MQ=255)

 cAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGcc                                                                                        <  1:3232084/93‑1 (MQ=255)

 cAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGcc                                                                                        <  2:3991265/93‑1 (MQ=255)

 cAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGcc                                                                                        <  1:892273/93‑1 (MQ=255)

  aGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGccc                                                                                       >  1:2708567/1‑93 (MQ=255)

  aGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGccc                                                                                       >  2:254591/1‑93 (MQ=255)

   gggCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCg                                                                                      >  1:4828765/1‑93 (MQ=255)

   gggCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCg                                                                                      <  1:4177614/93‑1 (MQ=255)

    ggCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCgg                                                                                     >  1:4699148/1‑93 (MQ=255)

     gCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGa                                                                                    <  2:4721547/93‑1 (MQ=255)

       ttCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGAcc                                                                                  >  2:5940851/1‑93 (MQ=255)

          gCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGcc                                                                               >  1:2149956/1‑93 (MQ=255)

          gCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTC‑TGTAGTTGGTGATGAGGTTAAACCGGAACCCCCCGCCCCGACCggcc                                                                              >  2:3194132/1‑90 (MQ=255)

           cacaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCa                                                                              >  2:2169999/1‑93 (MQ=255)

           cacaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCa                                                                              >  2:3859500/1‑93 (MQ=255)

           cacaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCa                                                                              <  1:3687059/93‑1 (MQ=255)

            acaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAg                                                                             >  2:1422621/1‑93 (MQ=255)

            acaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAg                                                                             >  2:840961/1‑93 (MQ=255)

            acaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAg                                                                             >  1:1227360/1‑93 (MQ=255)

            acaAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGAACGCCAg                                                                             >  2:1259229/1‑93 (MQ=255)

            acaAAACGGCGGCTTCTGCCGAAAGCGCATGGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAg                                                                             <  1:5664916/93‑1 (MQ=255)

               aaaCGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGt                                                                          <  1:4401289/93‑1 (MQ=255)

                   ggcggcTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGAt                                                                      <  1:173583/93‑1 (MQ=255)

                   ggcggcTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGAt                                                                      >  2:3518909/1‑93 (MQ=255)

                   ggcggcTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGAt                                                                      >  1:529915/1‑93 (MQ=255)

                    gcggcTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATc                                                                     <  1:5034155/93‑1 (MQ=255)

                     cggcTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCa                                                                    <  1:4474738/93‑1 (MQ=255)

                       gcTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAAc                                                                  >  2:4812341/1‑93 (MQ=255)

                        cTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACt                                                                 >  2:2450517/1‑93 (MQ=255)

                           cTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACTCCCGGACCGCCAGCGTTGATCAACTCAc                                                              <  1:2635245/93‑1 (MQ=255)

                           cTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCAc                                                              >  1:6452760/1‑93 (MQ=255)

                            tGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACt                                                             >  1:4648044/1‑93 (MQ=255)

                            tGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACt                                                             >  1:176714/1‑93 (MQ=255)

                            cgCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACt                                                             <  2:2329702/92‑1 (MQ=255)

                               cGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGcc                                                          >  1:2300741/1‑93 (MQ=255)

                                ggaaGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGccc                                                         >  2:5135025/3‑93 (MQ=255)

                                gAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGccc                                                         >  1:1516378/1‑93 (MQ=255)

                                gAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGccc                                                         >  2:3595210/1‑93 (MQ=255)

                                gAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGccc                                                         >  2:3641989/1‑93 (MQ=255)

                                gAAAGCGCATTGAGCGCGATGCTCATGTAGCTGTTGATGAGCTTAACGCAGATCTCCACCCCCGGACCGCCAGTGTTGATCACCTCACtccgc                                                         >  2:3040283/1‑89 (MQ=255)

                                    gcgcATTGACCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCg                                                     <  1:381563/93‑1 (MQ=255)

                                      gcATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGcc                                                   >  1:1551522/1‑93 (MQ=255)

                                      gcATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGcc                                                   >  1:3110301/1‑93 (MQ=255)

                                             gcgcGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGa                                            <  1:4016163/93‑1 (MQ=255)

                                               gcgATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATc                                          <  1:5348259/93‑1 (MQ=255)

                                               gcgATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATc                                          <  1:3797174/93‑1 (MQ=255)

                                                cgATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCg                                         <  2:14976/93‑1 (MQ=255)

                                                cgATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCg                                         <  2:4341802/93‑1 (MQ=255)

                                                cgATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGCATCg                                         >  1:6366093/1‑93 (MQ=255)

                                                 gATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCgg                                        >  2:5614551/1‑93 (MQ=255)

                                                 gATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCgg                                        <  1:6023990/93‑1 (MQ=255)

                                                 gATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCgg                                        <  1:2601858/93‑1 (MQ=255)

                                                 gATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCgg                                        <  1:3621935/93‑1 (MQ=255)

                                                 gATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCgg                                        >  2:2796005/1‑93 (MQ=255)

                                                  aTGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGgt                                       <  2:5803776/93‑1 (MQ=255)

                                                  aTGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGgt                                       >  2:2663240/1‑93 (MQ=255)

                                                   tGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGgtg                                      >  1:3591171/1‑93 (MQ=255)

                                                   tGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGgtg                                      >  1:2381958/1‑93 (MQ=255)

                                                    gCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGgtgt                                     >  2:1375420/1‑93 (MQ=255)

                                                     cTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGtgtg                                    <  2:1629311/93‑1 (MQ=255)

                                                     cTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGtgtg                                    >  1:2965831/1‑93 (MQ=255)

                                                      tCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTgg                                   >  1:2943090/1‑93 (MQ=255)

                                                       cATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGc                                  <  2:284883/93‑1 (MQ=255)

                                                       cATGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGc                                  >  2:5427436/1‑93 (MQ=255)

                                                         tGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCAc                                >  2:6188631/1‑93 (MQ=255)

                                                         tGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCAc                                >  1:941111/1‑93 (MQ=255)

                                                         tGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCAc                                >  2:4912866/1‑93 (MQ=255)

                                                         tGTAGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCAc                                >  2:4630453/1‑93 (MQ=255)

                                                            aGTTGTTGATGAGCTTAACGCGGATCGCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGtt                             <  2:5217203/93‑1 (MQ=255)

                                                            aGTTGTTGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGtt                             >  2:5876917/1‑93 (MQ=255)

                                                             gttgttGATGAGTTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTc                            <  2:3721999/93‑1 (MQ=255)

                                                             gttgttGATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCCCCATCAGGATCGGTGTGGCACGTTc                            <  1:2320892/93‑1 (MQ=255)

                                                               tgttgATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCaa                          <  1:4898336/93‑1 (MQ=255)

                                                                gttgATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAAc                         <  1:1639007/93‑1 (MQ=255)

                                                                 ttgATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACt                        <  2:6422828/93‑1 (MQ=255)

                                                                 ttgATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACt                        >  2:2711055/1‑93 (MQ=255)

                                                                  tgatgaGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGGTCAACtt                       >  1:1002135/1‑93 (MQ=255)

                                                                   gatgaGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTg                      >  2:5457483/1‑93 (MQ=255)

                                                                   gatgaGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTg                      >  1:3059593/1‑93 (MQ=255)

                                                                   gatgaGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTg                      <  1:5784277/93‑1 (MQ=255)

                                                                    atgaGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGt                     >  2:2939698/1‑93 (MQ=255)

                                                                      gaGCGTATCGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTc                   <  1:782540/93‑1 (MQ=255)

                                                                       tgCTTACCGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCATCCCACTGCCCATCTCCATCTGGATCGGTGTGGCACGTTCAACTTGTTCa                  <  2:703562/92‑1 (MQ=255)

                                                                       aGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCa                  <  2:6016145/93‑1 (MQ=255)

                                                                       aGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCa                  <  1:2419858/93‑1 (MQ=255)

                                                                        gCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAg                 <  2:6165092/93‑1 (MQ=255)

                                                                        gCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAg                 >  1:1164760/1‑93 (MQ=255)

                                                                         cTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGc                >  2:5514819/1‑93 (MQ=255)

                                                                          ttAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCg               <  1:246214/93‑1 (MQ=255)

                                                                           tAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCgg              <  2:5028493/93‑1 (MQ=255)

                                                                             aCGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTg            <  1:3939285/93‑1 (MQ=255)

                                                                                 ggATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTgccgc        >  2:1840450/1‑93 (MQ=255)

                                                                                 ggATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTgccgc        >  2:3665182/1‑93 (MQ=255)

                                                                                 ggATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTgccgc        >  2:4175528/1‑93 (MQ=255)

                                                                                  gATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTgccgcc       >  1:1350596/1‑93 (MQ=255)

                                                                                   aTCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCgcca      <  2:5390428/93‑1 (MQ=255)

                                                                                    tCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCgccag     >  1:5725752/1‑93 (MQ=255)

                                                                                      cccACGCCCGGACCGCCAGCTTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCgccagcc   <  2:5505443/93‑1 (MQ=255)

                                                                                      cccACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCgccagcc   >  1:2998061/1‑93 (MQ=255)

TCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTGATGAGCTTAACGCGGATCCCCATGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCA  >  NC_000913/4070566‑4070745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCATGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAGCAG  >  NC_000913/4070563‑4070749

GATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCAC                                                                                               <  SRR4302537.3671230/94‑1 (MQ=60)

 ATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACG                                                                                              <  SRR4302537.416376/94‑1 (MQ=60)

 ATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACG                                                                                              >  SRR4302537.259173/1‑94 (MQ=60)

 ATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACG                                                                                              >  SRR4302537.328908/1‑94 (MQ=60)

  TTCAGGGCTTCGCACAAAGCGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGC                                                                                             <  SRR4302537.2877131/94‑1 (MQ=60)

  TTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGC                                                                                             >  SRR4302537.5869169/1‑94 (MQ=60)

  TTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGAGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACCCGGATCCCCACGC                                                                                             >  SRR4302537.206587/1‑94 (MQ=60)

    CAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCC                                                                                           <  SRR4302537.3254859/94‑1 (MQ=60)

    CAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCC                                                                                           <  SRR4302537.285800/94‑1 (MQ=60)

    CAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCC                                                                                           >  SRR4302537.2727483/1‑94 (MQ=60)

    CAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCC                                                                                           <  SRR4302537.898425/94‑1 (MQ=60)

     AGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCG                                                                                          >  SRR4302537.4710515/1‑94 (MQ=60)

     AGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCG                                                                                          >  SRR4302537.4807600/1‑94 (MQ=60)

     AGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCG                                                                                          >  SRR4302537.4862121/1‑94 (MQ=60)

      GGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGG                                                                                         >  SRR4302537.4731659/1‑94 (MQ=60)

      GGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGG                                                                                         <  SRR4302537.4206778/94‑1 (MQ=60)

      GGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGG                                                                                         >  SRR4302537.2591652/1‑94 (MQ=60)

      GGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGG                                                                                         >  SRR4302537.4131256/1‑94 (MQ=60)

       GGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGA                                                                                        >  SRR4302537.310417/1‑94 (MQ=60)

       GGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGA                                                                                        >  SRR4302537.926921/1‑94 (MQ=60)

         CTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACC                                                                                      >  SRR4302537.5097294/1‑94 (MQ=60)

            CGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCC                                                                                   >  SRR4302537.710267/1‑94 (MQ=60)

            CGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCC                                                                                   >  SRR4302537.2165110/1‑94 (MQ=60)

             GCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCA                                                                                  >  SRR4302537.2979146/1‑94 (MQ=60)

             GCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCA                                                                                  <  SRR4302537.6502955/94‑1 (MQ=60)

              CACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAG                                                                                 <  SRR4302537.3712991/94‑1 (MQ=60)

              CACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAG                                                                                 >  SRR4302537.1235896/1‑94 (MQ=60)

               ACAAAACGGCGGCTTCTGGCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGC                                                                                >  SRR4302537.2353120/1‑94 (MQ=60)

               ACAAAACGGCGGCTTCTGCCGAAAGCGCATGGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGC                                                                                <  SRR4302537.5703672/94‑1 (MQ=60)

                 AAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGT                                                                              >  SRR4302537.641397/1‑94 (MQ=60)

                 AAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGT                                                                              >  SRR4302537.1544790/1‑94 (MQ=60)

                  AAACGGCGGCTTCTGCCGAAAGCGCATTTAGCGCGATGCTCATGTAGATGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTT                                                                             >  SRR4302537.3980508/1‑94 (MQ=60)

                  AAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTT                                                                             <  SRR4302537.2993612/94‑1 (MQ=60)

                  AAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTT                                                                             <  SRR4302537.4431660/94‑1 (MQ=60)

                   AACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTG                                                                            <  SRR4302537.3681113/94‑1 (MQ=60)

                   AACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTG                                                                            <  SRR4302537.3062250/94‑1 (MQ=60)

                     CGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGAT                                                                          >  SRR4302537.533550/1‑94 (MQ=60)

                      GGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATC                                                                         >  SRR4302537.3308806/1‑94 (MQ=60)

                      GGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATC                                                                         <  SRR4302537.174817/94‑1 (MQ=60)

                       GCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCA                                                                        <  SRR4302537.5068813/94‑1 (MQ=60)

                        CGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAA                                                                       <  SRR4302537.4505694/94‑1 (MQ=60)

                         GGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAAC                                                                      <  SRR4302537.2387986/94‑1 (MQ=60)

                          GCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACT                                                                     >  SRR4302537.3640402/1‑94 (MQ=60)

                           CTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTC                                                                    >  SRR4302537.4038195/1‑94 (MQ=60)

                            TTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCA                                                                   <  SRR4302537.436034/94‑1 (MQ=60)

                             TCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGCCCGCCAGCGTTGATCAACTCAC                                                                  <  SRR4302537.3930497/94‑1 (MQ=60)

                             TCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCAC                                                                  >  SRR4302537.1090690/1‑94 (MQ=60)

                             TCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCAC                                                                  >  SRR4302537.6496509/1‑94 (MQ=60)

                              CTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACTCCCGGACCGCCAGCGTTGATCAACTCACT                                                                 <  SRR4302537.2653687/94‑1 (MQ=60)

                              CTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACT                                                                 >  SRR4302537.3162105/1‑94 (MQ=60)

                              CTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACT                                                                 >  SRR4302537.4680178/1‑94 (MQ=60)

                              CTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACT                                                                 >  SRR4302537.177965/1‑94 (MQ=60)

                              CTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACT                                                                 <  SRR4302537.5939828/94‑1 (MQ=60)

                                 CCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCC                                                              >  SRR4302537.2316982/1‑94 (MQ=60)

                                 CCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAAAGCGGATCCCCACACCCGGACCGCCAGCGTTGATAACCTCACTGCC                                                              >  SRR4302537.3399126/1‑94 (MQ=60)

                                  CGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCC                                                             >  SRR4302537.1526974/1‑94 (MQ=60)

                                  CGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCC                                                             >  SRR4302537.847864/1‑94 (MQ=60)

                                      AGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCG                                                         <  SRR4302537.5612905/94‑1 (MQ=60)

                                      AGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAAATCACTGCCCATCG                                                         <  SRR4302537.2640676/94‑1 (MQ=60)

                                      AGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGACCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCG                                                         <  SRR4302537.2297366/94‑1 (MQ=60)

                                       GCGCATTGACCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGC                                                        <  SRR4302537.384209/94‑1 (MQ=60)

                                        CGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCC                                                       >  SRR4302537.1562345/1‑94 (MQ=60)

                                        CGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCC                                                       >  SRR4302537.3132023/1‑94 (MQ=60)

                                          CATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCAT                                                     >  SRR4302537.1412024/1‑94 (MQ=60)

                                            TTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCTCCATCA                                                   <  SRR4302537.381537/94‑1 (MQ=60)

                                               AGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGA                                                >  SRR4302537.3670546/1‑94 (MQ=60)

                                                GCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGAT                                               <  SRR4302537.4044281/94‑1 (MQ=60)

                                                 CGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATC                                              <  SRR4302537.503454/94‑1 (MQ=60)

                                                  GCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCG                                             <  SRR4302537.5384904/94‑1 (MQ=60)

                                                  GCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCG                                             <  SRR4302537.2470698/94‑1 (MQ=60)

                                                  GCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCG                                             <  SRR4302537.1803627/94‑1 (MQ=60)

                                                  GCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCG                                             <  SRR4302537.3141710/94‑1 (MQ=60)

                                                  GCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCG                                             <  SRR4302537.3823812/94‑1 (MQ=60)

                                                  GCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGCATCG                                             >  SRR4302537.6409512/1‑94 (MQ=60)

                                                   CGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGG                                            >  SRR4302537.1678815/1‑94 (MQ=60)

                                                   CGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCACCATCAGGATCGG                                            >  SRR4302537.577689/1‑94 (MQ=60)

                                                    GATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGT                                           <  SRR4302537.2620049/94‑1 (MQ=60)

                                                    GATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGT                                           <  SRR4302537.6065385/94‑1 (MQ=60)

                                                    GATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGT                                           <  SRR4302537.3647462/94‑1 (MQ=60)

                                                     ATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTG                                          >  SRR4302537.2398743/1‑94 (MQ=60)

                                                     ATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTG                                          >  SRR4302537.1614416/1‑94 (MQ=60)

                                                     ATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTG                                          >  SRR4302537.3616485/1‑94 (MQ=60)

                                                       TCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTG                                        <  SRR4302537.4503112/94‑1 (MQ=60)

                                                       GCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTG                                        >  SRR4302537.2986637/1‑94 (MQ=60)

                                                       GCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTG                                        >  SRR4302537.1183968/1‑94 (MQ=60)

                                                       GCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTG                                        <  SRR4302537.4639157/94‑1 (MQ=60)

                                                        CTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGG                                       >  SRR4302537.2963751/1‑94 (MQ=60)

                                                          CATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACAGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCA                                     <  SRR4302537.5746159/94‑1 (MQ=60)

                                                           ATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCCGCGTTGATCAACTCACTGCCCATCGCCATCAGCATCGGCGTGGCAC                                    >  SRR4302537.6223996/1‑94 (MQ=60)

                                                           ATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCAC                                    >  SRR4302537.947599/1‑94 (MQ=60)

                                                           ATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCAC                                    <  SRR4302537.385574/94‑1 (MQ=60)

                                                            TGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACG                                   >  SRR4302537.551181/1‑94 (MQ=60)

                                                             GTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGT                                  >  SRR4302537.2332710/1‑94 (MQ=60)

                                                               AGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTC                                >  SRR4302537.2157099/1‑94 (MQ=60)

                                                               AGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTC                                >  SRR4302537.2894431/1‑94 (MQ=60)

                                                                GTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCA                               >  SRR4302537.4717571/1‑94 (MQ=60)

                                                                GTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCCCCATCAGGATCGGTGTGGCACGTTCA                               <  SRR4302537.2337280/94‑1 (MQ=60)

                                                                 TTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAA                              >  SRR4302537.2698556/1‑94 (MQ=60)

                                                                  TGTTGGTTATGAGCTTAACGCGGACCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTC                                <  SRR4302537.3268314/94‑1 (MQ=60)

                                                                  TGTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAAC                             <  SRR4302537.4932150/94‑1 (MQ=60)

                                                                   GTTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACT                            <  SRR4302537.1650489/94‑1 (MQ=60)

                                                                    TTG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGGTCAACTT                           >  SRR4302537.1009050/1‑94 (MQ=60)

                                                                     TG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTG                          >  SRR4302537.3080909/1‑94 (MQ=60)

                                                                     TG‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTG                          <  SRR4302537.4274078/94‑1 (MQ=60)

                                                                      G‑‑‑ATGAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGT                         <  SRR4302537.5823931/94‑1 (MQ=60)

                                                                            GAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCA                      <  SRR4302537.2133681/94‑1 (MQ=60)

                                                                            GAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCA                      <  SRR4302537.3838734/94‑1 (MQ=60)

                                                                            GAGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGCGTCGCACGTTCAACTTGTTCA                      >  SRR4302537.5357530/1‑94 (MQ=60)

                                                                            GAGCGTATCGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCA                      <  SRR4302537.787914/94‑1 (MQ=60)

                                                                             AGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAG                     >  SRR4302537.1172858/1‑94 (MQ=60)

                                                                             AGCTTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAG                     <  SRR4302537.2436911/94‑1 (MQ=60)

                                                                                TTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGG                  >  SRR4302537.1715038/1‑94 (MQ=60)

                                                                                TTAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGG                  <  SRR4302537.247957/94‑1 (MQ=60)

                                                                                 TAACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGT                 >  SRR4302537.2786587/1‑94 (MQ=60)

                                                                                  AACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTG                >  SRR4302537.1756723/1‑94 (MQ=60)

                                                                                   ACGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGC               <  SRR4302537.3966822/94‑1 (MQ=60)

                                                                                    CGCGGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCC              >  SRR4302537.4998380/1‑94 (MQ=60)

                                                                                       GGATCCCCATGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCC           >  SRR4302537.2811273/1‑94 (MQ=60)

                                                                                       GGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCC           >  SRR4302537.4866689/1‑94 (MQ=60)

                                                                                       GGATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCC           >  SRR4302537.1360005/1‑94 (MQ=60)

                                                                                        GATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCA          <  SRR4302537.1392095/94‑1 (MQ=60)

                                                                                         ATCCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAG         >  SRR4302537.5764946/1‑94 (MQ=60)

                                                                                           CCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCC       >  SRR4302537.2429169/1‑94 (MQ=60)

                                                                                           CCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCC       >  SRR4302537.2987932/1‑94 (MQ=60)

                                                                                           CCCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCC       >  SRR4302537.3018961/1‑94 (MQ=60)

                                                                                           CCCC‑‑GCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAG     <  SRR4302537.2146409/94‑1 (MQ=60)

                                                                                            CCCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCA      <  SRR4302537.1266704/94‑1 (MQ=60)

                                                                                             CCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAG     >  SRR4302537.1477568/1‑94 (MQ=60)

                                                                                             CCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAG     <  SRR4302537.2526181/94‑1 (MQ=60)

                                                                                             CCACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAG     <  SRR4302537.1137075/94‑1 (MQ=60)

                                                                                              CACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAGC    <  SRR4302537.2325596/94‑1 (MQ=60)

                                                                                              CACGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAGC    >  SRR4302537.4268975/1‑94 (MQ=60)

                                                                                                CGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAGCAG  >  SRR4302537.373792/1‑94 (MQ=60)

                                                                                                CGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAGCAG  >  SRR4302537.1040640/1‑94 (MQ=60)

GATTCAGGGCTTCGCACAAAACGGCGGCTTCTGCCGAAAGCGCATTGAGCGCGATGCTCATGTAGTTGTTG‑‑‑ATGAGCTTAACGCGGATCCCCATGCCCGGACCGCCAGCGTTGATCAACTCACTGCCCATCGCCATCAGGATCGGTGTGGCACGTTCAACTTGTTCAGCGGTGCCGCCAGCCAGCAG  >  NC_000913/4070563‑4070749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`