Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,080,993	T→C	T804A (ACT→GCT)	fdoG ←	formate dehydrogenase‑O, major subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,080,993	0	T	C	100.0%	705.1 / NA	202	T804A (ACT→GCT)	fdoG	formate dehydrogenase‑O, major subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (97/105); total (97/105)

Only 100 of 210 total aligned reads displayed.

CCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGTGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAA  >  NC_000913/4080903‑4081082

ccATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAgcgc                                                                                         <  2:6241280/93‑1 (MQ=255)

 cATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGcc                                                                                        >  1:5285388/1‑93 (MQ=255)

   tGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCATCCGGTCCACTTAGCGCCGt                                                                                      <  2:3355047/93‑1 (MQ=255)

   tGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGt                                                                                      >  2:2276309/1‑93 (MQ=255)

   tGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGt                                                                                      >  1:5896149/1‑93 (MQ=255)

    gCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGGCGGTCCACTTAGCGCCGTc                                                                                     >  1:4980499/1‑93 (MQ=255)

    gCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTc                                                                                     >  2:4284437/1‑93 (MQ=255)

      cTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTccc                                                                                   >  2:3701136/1‑93 (MQ=255)

       ttCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCa                                                                                  >  1:1531005/1‑93 (MQ=255)

        tCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCAt                                                                                 >  2:3111728/1‑93 (MQ=255)

        tCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCCGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCAt                                                                                 >  2:1226502/1‑93 (MQ=255)

         ccTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCAtt                                                                                >  1:2094240/1‑93 (MQ=255)

          ctgctgCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCAttt                                                                               <  2:1095535/93‑1 (MQ=255)

           tgctgcATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCCTTTc                                                                              >  2:568231/1‑93 (MQ=255)

           tgctgcATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTc                                                                              >  1:5810139/1‑93 (MQ=255)

           cgctgcATGATAAACCGCCCGACGCCGCTGCCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTc                                                                              <  1:1474316/92‑1 (MQ=255)

            gttgcAGGATAAACGGCCTGACGCCGGTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCa                                                                             <  2:1951592/91‑1 (MQ=255)

              ggcATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGc                                                                           <  1:2118246/92‑1 (MQ=255)

                 aTGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAAc                                                                        <  2:2140862/93‑1 (MQ=255)

                  tGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACt                                                                       >  1:1705130/1‑93 (MQ=255)

                  tGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACt                                                                       >  1:6398087/1‑93 (MQ=255)

                   gATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTg                                                                      >  1:4997668/1‑93 (MQ=255)

                    aTAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGa                                                                     >  1:3267653/1‑93 (MQ=255)

                    aTAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGa                                                                     >  2:5979982/1‑93 (MQ=255)

                        aCGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCt                                                                 <  2:1874039/93‑1 (MQ=255)

                        aCGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCt                                                                 <  1:1838351/93‑1 (MQ=255)

                        aCGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCt                                                                 <  1:1571811/93‑1 (MQ=255)

                        aCGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCt                                                                 >  1:3889197/1‑93 (MQ=255)

                        aCGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCt                                                                 <  1:1242320/93‑1 (MQ=255)

                         cGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCtt                                                                >  2:2846657/1‑93 (MQ=255)

                          ggCCCGACGCCGCTCCCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTc                                                               <  1:850643/93‑1 (MQ=255)

                           gCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCg                                                              <  1:5609267/93‑1 (MQ=255)

                            cccGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCgg                                                             <  1:6127320/93‑1 (MQ=255)

                             ccGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGa                                                            >  1:5584115/1‑93 (MQ=255)

                             ccGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGa                                                            >  1:5377954/1‑93 (MQ=255)

                             ccGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGa                                                            <  2:5590502/93‑1 (MQ=255)

                             ccGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCAGa                                                            >  2:1352386/1‑93 (MQ=255)

                             ccGACGCCGCGACCCGGAGGCGCTGCGCTGTAGTCCGGAATACCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGa                                                            <  2:5697781/93‑1 (MQ=255)

                               gACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATc                                                          <  2:4680055/93‑1 (MQ=255)

                               gACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATc                                                          >  1:3585137/1‑93 (MQ=255)

                                aCGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATcc                                                         >  1:4208835/1‑93 (MQ=255)

                                 cgccgcTGCCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATccc                                                        <  2:4197462/93‑1 (MQ=255)

                                   ccgcTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCAc                                                      >  1:550307/1‑93 (MQ=255)

                                   ccgcTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCAc                                                      >  1:5213104/1‑93 (MQ=255)

                                    cgcTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACg                                                     >  2:2591449/1‑93 (MQ=255)

                                    cgcTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACg                                                     <  2:2319311/93‑1 (MQ=255)

                                     gcTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACgg                                                    >  1:1485626/1‑93 (MQ=255)

                                      ctccccGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACggg                                                   <  2:2547529/90‑1 (MQ=255)

                                      cTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACggg                                                   >  2:2200304/1‑93 (MQ=255)

                                       tACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGt                                                  <  1:3537481/93‑1 (MQ=255)

                                         cccGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTa                                                >  1:2405093/1‑93 (MQ=255)

                                         cccGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTa                                                >  1:2072814/1‑93 (MQ=255)

                                         cccGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTa                                                >  1:4837861/1‑93 (MQ=255)

                                           cGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTAcc                                              <  1:3550708/93‑1 (MQ=255)

                                            ggAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTAccc                                             >  1:5530403/1‑93 (MQ=255)

                                            ggAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTAccc                                             <  1:300167/93‑1 (MQ=255)

                                            ggAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTAccc                                             >  2:1768746/1‑93 (MQ=255)

                                            ggAGGCGCTGCGCTGTAGTCCGAAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTAccc                                             <  1:3365919/93‑1 (MQ=255)

                                             gAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCt                                            >  2:5113905/1‑93 (MQ=255)

                                               ggCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGc                                          >  1:4632621/1‑93 (MQ=255)

                                                gcgctgcgctGTAGTCCTGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCg                                         <  1:5571938/93‑1 (MQ=255)

                                                gcgctgcgctGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCGCGGGTTACCCTGCg                                         <  2:3575167/93‑1 (MQ=255)

                                                    tgcgctgTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATc                                     <  2:2947804/93‑1 (MQ=255)

                                                        ctgTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCg                                 >  2:5226132/1‑93 (MQ=255)

                                                           tAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCCGAg                              >  2:3859376/1‑93 (MQ=255)

                                                             gcccGGAATACCCCAGCCGGTCCCCTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGgc                            <  2:5406222/91‑1 (MQ=255)

                                                             gTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGgc                            >  1:5042151/1‑93 (MQ=255)

                                                             gTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGCTACCCTGCGGATCTGCGGAGgc                            >  1:6029002/1‑93 (MQ=255)

                                                                cGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGcgcg                         >  2:5762989/1‑93 (MQ=255)

                                                                cGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGcgcg                         >  2:3425922/1‑93 (MQ=255)

                                                                cGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGcgcg                         <  2:5367924/93‑1 (MQ=255)

                                                                 ggAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCgg                        <  2:3624051/93‑1 (MQ=255)

                                                                  gAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGt                       >  1:1189301/1‑93 (MQ=255)

                                                                  gAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGt                       >  1:1624185/1‑93 (MQ=255)

                                                                  gAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCAGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGt                       >  2:5872551/1‑93 (MQ=255)

                                                                   aaTATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGtt                      <  1:6174286/93‑1 (MQ=255)

                                                                    atatCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTta                     >  2:476903/1‑93 (MQ=255)

                                                                     tatCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTtat                    <  2:1320224/93‑1 (MQ=255)

                                                                     tatCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTtat                    <  1:4071065/93‑1 (MQ=255)

                                                                      atCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTtata                   <  2:2692965/93‑1 (MQ=255)

                                                                      accccAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTtata                   <  1:2295392/91‑1 (MQ=255)

                                                                       tCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATAc                  >  1:2961806/1‑93 (MQ=255)

                                                                       tCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGGTATAc                  >  2:4448288/1‑93 (MQ=255)

                                                                         ccAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAg                >  2:3072629/1‑93 (MQ=255)

                                                                         ccAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAg                >  1:2901280/1‑93 (MQ=255)

                                                                            gCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAAt             >  1:3935455/1‑93 (MQ=255)

                                                                             ccGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATg            <  2:3709329/93‑1 (MQ=255)

                                                                              cGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgc           <  1:646574/93‑1 (MQ=255)

                                                                              cGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgc           <  1:2340720/93‑1 (MQ=255)

                                                                               ggTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgcg          >  2:4069981/1‑93 (MQ=255)

                                                                               ggTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgcg          >  1:2422810/1‑93 (MQ=255)

                                                                                gTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgcgg         >  1:4484980/1‑93 (MQ=255)

                                                                                gTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgcgg         <  1:3492146/93‑1 (MQ=255)

                                                                                  ccACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgcggcg       >  2:6286985/1‑93 (MQ=255)

                                                                                  ccACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATgcggcg       >  1:5957416/1‑93 (MQ=255)

                                                                                   cACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGcggcgg      >  1:3808101/1‑93 (MQ=255)

                                                                                      ttAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTa   >  1:1009224/1‑93 (MQ=255)

                                                                                       tAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATGCAGAATGCGGCGGTTaa  >  2:1153154/1‑93 (MQ=255)

                                                                                       tAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTaa  <  1:3069837/93‑1 (MQ=255)

                                                                                       tAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTaa  <  2:505252/93‑1 (MQ=255)

CCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGTGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAA  >  NC_000913/4080903‑4081082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGTGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAGCGG  >  NC_000913/4080900‑4081086

GCCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGC                                                                                               >  SRR4302537.4286991/1‑94 (MQ=60)

 CCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCG                                                                                              >  SRR4302537.2925288/1‑94 (MQ=60)

 CCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCG                                                                                              <  SRR4302537.2978286/94‑1 (MQ=60)

 CCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCG                                                                                              >  SRR4302537.487409/1‑94 (MQ=60)

 CCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCG                                                                                              <  SRR4302537.4937869/94‑1 (MQ=60)

   CCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCC                                                                                            >  SRR4302537.5321732/1‑94 (MQ=60)

     ATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGT                                                                                          >  SRR4302537.5936605/1‑94 (MQ=60)

     ATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGT                                                                                          >  SRR4302537.5657282/1‑94 (MQ=60)

      TGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGGCGGTCCACTTAGCGCCGTC                                                                                         >  SRR4302537.5014824/1‑94 (MQ=60)

         CTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCA                                                                                      >  SRR4302537.5952262/1‑94 (MQ=60)

         CTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCA                                                                                      >  SRR4302537.1541704/1‑94 (MQ=60)

           TCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATT                                                                                    >  SRR4302537.2109009/1‑94 (MQ=60)

           TCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATT                                                                                    <  SRR4302537.2447379/94‑1 (MQ=60)

             CTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTC                                                                                  >  SRR4302537.5849972/1‑94 (MQ=60)

              TGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCA                                                                                 >  SRR4302537.2401465/1‑94 (MQ=60)

              TGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCA                                                                                 <  SRR4302537.2435459/94‑1 (MQ=60)

              TGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCA                                                                                 <  SRR4302537.5904558/94‑1 (MQ=60)

              CGCTGCATGATAAACCGCCCGACGCCGCTGCCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCA                                                                                 <  SRR4302537.1484562/94‑1 (MQ=60)

                 TGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCA                                                                              <  SRR4302537.5616837/94‑1 (MQ=60)

                 TGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCA                                                                              >  SRR4302537.2017661/1‑94 (MQ=60)

                 GGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCA                                                                              <  SRR4302537.2133161/94‑1 (MQ=60)

                   CATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAAC                                                                            <  SRR4302537.4244795/94‑1 (MQ=60)

                    ATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACT                                                                           >  SRR4302537.1717051/1‑94 (MQ=60)

                    ATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACT                                                                           >  SRR4302537.6441651/1‑94 (MQ=60)

                     TGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTG                                                                          <  SRR4302537.1954778/94‑1 (MQ=60)

                     TGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTG                                                                          >  SRR4302537.5032107/1‑94 (MQ=60)

                     TGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTG                                                                          <  SRR4302537.5311948/94‑1 (MQ=60)

                     TGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTG                                                                          <  SRR4302537.6433820/94‑1 (MQ=60)

                      GATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGA                                                                         >  SRR4302537.3290709/1‑94 (MQ=60)

                        TAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACG                                                                       >  SRR4302537.1370610/1‑94 (MQ=60)

                          AACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCT                                                                     <  SRR4302537.5192198/94‑1 (MQ=60)

                          AACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCT                                                                     >  SRR4302537.3916401/1‑94 (MQ=60)

                           ACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTT                                                                    <  SRR4302537.1851145/94‑1 (MQ=60)

                           ACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTT                                                                    <  SRR4302537.2331685/94‑1 (MQ=60)

                           ACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTT                                                                    <  SRR4302537.1250978/94‑1 (MQ=60)

                           ACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTT                                                                    <  SRR4302537.1582779/94‑1 (MQ=60)

                             GGCCCGACGCCGCTCCCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCG                                                                  <  SRR4302537.856474/94‑1 (MQ=60)

                              GCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGG                                                                 <  SRR4302537.764219/94‑1 (MQ=60)

                              GCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGG                                                                 <  SRR4302537.5647619/94‑1 (MQ=60)

                               CCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGA                                                                >  SRR4302537.5622288/1‑94 (MQ=60)

                               CCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGA                                                                <  SRR4302537.6169435/94‑1 (MQ=60)

                               CCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGA                                                                >  SRR4302537.5414743/1‑94 (MQ=60)

                               CCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGA                                                                <  SRR4302537.6112744/94‑1 (MQ=60)

                                CCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGAT                                                               >  SRR4302537.5462006/1‑94 (MQ=60)

                                 CGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATC                                                              >  SRR4302537.3610411/1‑94 (MQ=60)

                                  GACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCC                                                             >  SRR4302537.4238197/1‑94 (MQ=60)

                                     GCGGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCAC                                                          <  SRR4302537.323378/94‑1 (MQ=60)

                                     GCCGCTACCCGGAGGCGCTTCGCTGTAGTCGGGAATACCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCAC                                                          <  SRR4302537.5550696/94‑1 (MQ=60)

                                     GCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCAC                                                          >  SRR4302537.554095/1‑94 (MQ=60)

                                     GCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCAC                                                          >  SRR4302537.5248948/1‑94 (MQ=60)

                                      CCGCTCCCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACG                                                         <  SRR4302537.3957394/94‑1 (MQ=60)

                                      CCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACG                                                         <  SRR4302537.3416768/94‑1 (MQ=60)

                                      CCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACG                                                         >  SRR4302537.3043742/1‑94 (MQ=60)

                                       CGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGG                                                        >  SRR4302537.1495963/1‑94 (MQ=60)

                                        GCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGG                                                       >  SRR4302537.1199927/1‑94 (MQ=60)

                                          TACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTT                                                     >  SRR4302537.2308485/1‑94 (MQ=60)

                                          TACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTT                                                     <  SRR4302537.3562468/94‑1 (MQ=60)

                                          TACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTT                                                     <  SRR4302537.2107355/94‑1 (MQ=60)

                                           ACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTA                                                    >  SRR4302537.2422022/1‑94 (MQ=60)

                                           ACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTA                                                    >  SRR4302537.2087414/1‑94 (MQ=60)

                                           ACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTA                                                    >  SRR4302537.4871261/1‑94 (MQ=60)

                                              CGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCC                                                 >  SRR4302537.5568154/1‑94 (MQ=60)

                                              CGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCC                                                 <  SRR4302537.3575785/94‑1 (MQ=60)

                                               GGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCT                                                <  SRR4302537.302261/94‑1 (MQ=60)

                                               GGAGGCGCTGCGCTGTAGTCCGAAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCT                                                <  SRR4302537.3389759/94‑1 (MQ=60)

                                                 AGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGC                                              >  SRR4302537.4664669/1‑94 (MQ=60)

                                                  GGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCG                                             <  SRR4302537.5042399/94‑1 (MQ=60)

                                                   GCGCTGCGCTGTAGTCCTGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGG                                            <  SRR4302537.5610026/94‑1 (MQ=60)

                                                   GCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGG                                            <  SRR4302537.6199229/94‑1 (MQ=60)

                                                    CGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGGTACCCTGCGGT                                           >  SRR4302537.6057184/1‑94 (MQ=60)

                                                     GCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGAT                                          >  SRR4302537.4824711/1‑94 (MQ=60)

                                                     GCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGAT                                          <  SRR4302537.1061329/94‑1 (MQ=60)

                                                      ctgctcgtaattccaGAATATCCCAGCCGGTCCACTTAGCCCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATC                                         <  SRR4302537.483380/79‑1 (MQ=60)

                                                      cgcCGCTGGAGTCGGGAATACCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATC                                         <  SRR4302537.3549710/91‑1 (MQ=60)

                                                      CTGCGCTGTAGTCCGGAATACCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATC                                         <  SRR4302537.1517549/94‑1 (MQ=60)

                                                         CGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGC                                      >  SRR4302537.5601124/1‑94 (MQ=60)

                                                         CGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGC                                      >  SRR4302537.2114464/1‑94 (MQ=60)

                                                           CTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGG                                    <  SRR4302537.5019128/94‑1 (MQ=60)

                                                            TGTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGA                                   <  SRR4302537.5360205/94‑1 (MQ=60)

                                                             GTAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAG                                  >  SRR4302537.563687/1‑94 (MQ=60)

                                                              GAGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCTGAGG                                 <  SRR4302537.1687619/94‑1 (MQ=60)

                                                               AGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGC                                >  SRR4302537.5076865/1‑94 (MQ=60)

                                                               AGTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGCTACCCTGCGGATCTGCGGAGGC                                >  SRR4302537.6070430/1‑94 (MQ=60)

                                                                GTCCGGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGCGGCG                               >  SRR4302537.4067365/1‑94 (MQ=60)

                                                                  CCGGAATACCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCG                             <  SRR4302537.1578976/94‑1 (MQ=60)

                                                                    GGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGT                           >  SRR4302537.1635547/1‑94 (MQ=60)

                                                                    GGAATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGT                           >  SRR4302537.1197562/1‑94 (MQ=60)

                                                                      AATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTA                         <  SRR4302537.6216808/94‑1 (MQ=60)

                                                                       ATATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTAT                        <  SRR4302537.4152069/94‑1 (MQ=60)

                                                                        TATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATA                       <  SRR4302537.4099496/94‑1 (MQ=60)

                                                                         ATCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATAC                      >  SRR4302537.2982600/1‑94 (MQ=60)

                                                                         ACCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATAC                      <  SRR4302537.2311593/94‑1 (MQ=60)

                                                                          TCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACA                     <  SRR4302537.3968232/94‑1 (MQ=60)

                                                                          TCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACA                     >  SRR4302537.175053/1‑94 (MQ=60)

                                                                          CCCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACA                     <  SRR4302537.4930433/94‑1 (MQ=60)

                                                                           CCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAG                    >  SRR4302537.6122645/1‑94 (MQ=60)

                                                                           CCCAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAG                    >  SRR4302537.2921664/1‑94 (MQ=60)

                                                                             CAGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTattccaaaa                  >  SRR4302537.1461123/1‑85 (MQ=60)

                                                                              AGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAAT                 >  SRR4302537.3962961/1‑94 (MQ=60)

                                                                              AGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAAT                 <  SRR4302537.2998879/94‑1 (MQ=60)

                                                                              AGCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAAT                 >  SRR4302537.3752271/1‑94 (MQ=60)

                                                                               GCCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATG                <  SRR4302537.3600782/94‑1 (MQ=60)

                                                                                CCGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGCGCTGCGGAGGCGCGGTTATACAGAATGC               >  SRR4302537.1449815/1‑94 (MQ=60)

                                                                                 CGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCG              <  SRR4302537.293910/94‑1 (MQ=60)

                                                                                 CGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCG              >  SRR4302537.2439877/1‑94 (MQ=60)

                                                                                 CGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCG              <  SRR4302537.2357218/94‑1 (MQ=60)

                                                                                 CGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCG              <  SRR4302537.650979/94‑1 (MQ=60)

                                                                                 CGGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCG              >  SRR4302537.3574441/1‑94 (MQ=60)

                                                                                 CGGTCCACTGAGCCCCCTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCG              <  SRR4302537.650978/94‑1 (MQ=60)

                                                                                  GGTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGG             >  SRR4302537.4516005/1‑94 (MQ=60)

                                                                                   GTCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGC            <  SRR4302537.3516846/94‑1 (MQ=60)

                                                                                    TCCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCG           >  SRR4302537.5998305/1‑94 (MQ=60)

                                                                                     CCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGG          >  SRR4302537.3834802/1‑94 (MQ=60)

                                                                                     CCACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGGTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGG          >  SRR4302537.2037311/1‑94 (MQ=60)

                                                                                      CACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGT         >  SRR4302537.1493009/1‑94 (MQ=60)

                                                                                      CACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGT         >  SRR4302537.3084/1‑94 (MQ=60)

                                                                                       ACTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTT        <  SRR4302537.3907711/94‑1 (MQ=60)

                                                                                        CTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTA       >  SRR4302537.1016185/1‑94 (MQ=60)

                                                                                        CTTAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTA       >  SRR4302537.3302674/1‑94 (MQ=60)

                                                                                          TAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAG     <  SRR4302537.4606211/94‑1 (MQ=60)

                                                                                          TAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAG     <  SRR4302537.5365386/94‑1 (MQ=60)

                                                                                          TAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAG     >  SRR4302537.4452262/1‑94 (MQ=60)

                                                                                          TAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAG     <  SRR4302537.3091228/94‑1 (MQ=60)

                                                                                          TAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAG     >  SRR4302537.3262818/1‑94 (MQ=60)

                                                                                          TAGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAG     <  SRR4302537.1616278/94‑1 (MQ=60)

                                                                                           AGCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAGC    <  SRR4302537.5049701/94‑1 (MQ=60)

                                                                                            GCGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAGCG   <  SRR4302537.3843559/94‑1 (MQ=60)

                                                                                             CGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAGCGG  >  SRR4302537.6513634/1‑94 (MQ=60)

                                                                                             CGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGCTAAGCGG  >  SRR4302537.145169/1‑94 (MQ=60)

GCCCCATGCCTTCCTGCTGCATGATAAACGGCCCGACGCCGCTACCCGGAGGCGCTGCGCTGTAGTCCGGAATATCCCAGCCGGTCCACTTAGTGCCGTCCCATTTCAGCAACTGACGCTTCGGATCCCACGGGTTACCCTGCGGATCTGCGGAGGCGCGGTTATACAGAATGCGGCGGTTAAGCGG  >  NC_000913/4080900‑4081086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`