Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
882 |
254.4 |
12957588 |
98.0% |
12698436 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,177,348 |
A→G |
intergenic (+187/‑226) |
rplA → / → rplJ |
50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,177,348 | 0 | A | G | 100.0%
| 899.6
/ NA
| 255 | intergenic (+187/‑226) | rplA/rplJ | 50S ribosomal subunit protein L1/50S ribosomal subunit protein L10 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (134/121); total (134/121) |
Only 100 of 259 total aligned reads displayed.
GGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAG > NC_000913/4177258‑4177437
|
ggcAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTa < 1:266938/93‑1 (MQ=255)
gcAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAg < 1:968809/93‑1 (MQ=255)
cAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGa < 2:1834686/93‑1 (MQ=255)
aCTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGaaa < 1:2974288/93‑1 (MQ=255)
aCTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGaaa > 2:2522407/1‑93 (MQ=255)
aCTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGaaa > 1:2925783/1‑93 (MQ=255)
aCTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGaaa > 2:3525091/1‑93 (MQ=255)
tgagtgagTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAg < 1:4784546/93‑1 (MQ=255)
tgagtgagTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAg < 1:2558211/93‑1 (MQ=255)
tgagtgagTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAg > 2:5676344/1‑93 (MQ=255)
tgagtgagTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAg > 2:227842/1‑93 (MQ=255)
agtgagtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGAt > 1:79640/1‑93 (MQ=255)
gtgagtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGAtt < 1:3061959/93‑1 (MQ=255)
tgagtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGAttt < 1:4911725/93‑1 (MQ=255)
gagtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTg > 1:2981916/1‑93 (MQ=255)
gagtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGGAGAAAAGATTTg > 2:4086446/1‑93 (MQ=255)
agtCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGt < 1:5015885/93‑1 (MQ=255)
gtCGCCAGGAGCATAGCTATCTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGtt > 2:6317144/1‑93 (MQ=255)
tCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTc < 2:3022812/93‑1 (MQ=255)
tCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTc < 2:5159841/93‑1 (MQ=255)
tCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTc > 1:6206620/1‑93 (MQ=255)
cAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTg > 1:5736118/1‑93 (MQ=255)
cAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTg < 2:2286096/93‑1 (MQ=255)
cAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTg > 2:6003343/1‑93 (MQ=255)
cAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTg < 1:2349547/93‑1 (MQ=255)
aGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTgg < 2:1091560/93‑1 (MQ=255)
gAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAg < 2:3230329/93‑1 (MQ=255)
gAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAg < 2:4244421/93‑1 (MQ=255)
gCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGcc > 1:4719443/1‑93 (MQ=255)
cATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCt < 2:1689985/93‑1 (MQ=255)
aTAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTg > 1:3675278/1‑93 (MQ=255)
aTAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTg < 1:4024112/93‑1 (MQ=255)
aTAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTg > 2:4802541/1‑93 (MQ=255)
aTAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGGTGGAGCCTg > 1:5440633/1‑93 (MQ=255)
tAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTgg > 1:898720/1‑93 (MQ=255)
gCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGcc < 1:6465745/93‑1 (MQ=255)
tAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTa > 2:3791996/1‑93 (MQ=255)
tAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTa > 1:5134378/1‑93 (MQ=255)
tAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTa < 2:1230428/93‑1 (MQ=255)
aaCTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTAt > 1:342599/1‑93 (MQ=255)
aCTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATc < 2:3932741/93‑1 (MQ=255)
aCTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATc < 2:2450902/93‑1 (MQ=255)
cTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATcc < 1:1153711/93‑1 (MQ=255)
tATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCa < 2:2044914/93‑1 (MQ=255)
tgtgACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAgg < 1:5228057/93‑1 (MQ=255)
tgtgACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAgg < 1:2119196/93‑1 (MQ=255)
tgtgACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAgg > 2:1160510/1‑93 (MQ=255)
gtgACTGGTGCGAATGAAGGAAGTCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGc > 2:6083076/1‑93 (MQ=255)
gACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCt > 2:508394/1‑93 (MQ=255)
aCTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGTTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTc < 2:5184104/93‑1 (MQ=255)
cTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTcc > 1:1333414/1‑93 (MQ=255)
ggTGCGAATGAAGGAAGCCAACGCGGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGt < 1:3749858/93‑1 (MQ=255)
gTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTc > 1:5626071/1‑93 (MQ=255)
cGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGaa > 2:4891233/1‑93 (MQ=255)
cGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGaa > 2:2603771/1‑93 (MQ=255)
gAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAg > 1:3170602/1‑93 (MQ=255)
aaTGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGa < 1:4521745/93‑1 (MQ=255)
aaTGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGa < 2:3545316/93‑1 (MQ=255)
aaTGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGa > 1:3981639/1‑93 (MQ=255)
aTGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGAc < 1:5753054/93‑1 (MQ=255)
gaaggaagCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCg > 1:4485176/1‑93 (MQ=255)
gaaggaagCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCg > 2:1455911/1‑93 (MQ=255)
gaaggaagCCAACGCCGTCACAAGCTGAATAGCGACGGGCAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCg > 1:1828924/1‑93 (MQ=255)
gaagCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAgg < 1:5815062/93‑1 (MQ=255)
aagCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGa < 2:2883130/93‑1 (MQ=255)
agCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAg > 2:4558170/1‑93 (MQ=255)
gCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGt < 2:3740980/93‑1 (MQ=255)
gCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGt > 2:6182833/1‑93 (MQ=255)
gCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGt < 2:4348151/93‑1 (MQ=255)
ccAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGtt < 2:1933686/93‑1 (MQ=255)
aaCGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTc < 1:1766496/93‑1 (MQ=255)
aCGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGCTTCg > 1:1271970/1‑93 (MQ=255)
gCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCa > 2:2132180/1‑93 (MQ=255)
gCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCa > 2:5644063/1‑93 (MQ=255)
gCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCa > 1:1970508/1‑93 (MQ=255)
ccGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCaa < 1:3487129/93‑1 (MQ=255)
ccGTCACAAGATGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCaa > 2:5041655/1‑93 (MQ=255)
cGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAg > 2:5753364/1‑93 (MQ=255)
gTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGa > 1:4640464/1‑93 (MQ=255)
gTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGa > 1:2200522/1‑93 (MQ=255)
tCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGaa > 1:2026420/1‑93 (MQ=255)
cacaAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGaaa < 2:690588/93‑1 (MQ=255)
cacaAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGaaa < 2:44192/93‑1 (MQ=255)
acaAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGaaaa > 2:5223831/1‑92 (MQ=255)
acaAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAAc > 1:1061882/1‑93 (MQ=255)
aaGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACtt > 1:4347879/1‑93 (MQ=255)
aGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTa < 1:2492605/93‑1 (MQ=255)
aGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTa > 1:3299571/1‑93 (MQ=255)
cTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAt > 1:2719743/1‑93 (MQ=255)
cTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAt < 2:634948/93‑1 (MQ=255)
cTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAt > 1:4978287/1‑93 (MQ=255)
tGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGTCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATc < 1:5696939/93‑1 (MQ=255)
tGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATc > 1:154090/1‑93 (MQ=255)
gAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATcc > 1:4940533/1‑93 (MQ=255)
aaTAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATccc < 1:6030149/93‑1 (MQ=255)
aTAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATcccc < 2:5567403/93‑1 (MQ=255)
gCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCACGAAACTTAATCCCCTGc > 1:5093797/1‑93 (MQ=255)
gCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGc > 1:6142672/1‑93 (MQ=255)
gACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGt < 2:1747950/93‑1 (MQ=255)
cGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAg > 1:819591/1‑93 (MQ=255)
|
GGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAG > NC_000913/4177258‑4177437
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGG > NC_000913/4177257‑4177441
|
CGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTA < SRR4302537.6236770/94‑1 (MQ=60)
GGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAG < SRR4302537.1225649/94‑1 (MQ=60)
GGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAG < SRR4302537.268811/94‑1 (MQ=60)
GCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGA < SRR4302537.975488/94‑1 (MQ=60)
CAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAA < SRR4302537.349755/94‑1 (MQ=60)
AACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAA > SRR4302537.5061755/1‑94 (MQ=60)
AACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAA > SRR4302537.2946330/1‑94 (MQ=60)
ACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAA > SRR4302537.2992348/1‑94 (MQ=60)
ACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAA < SRR4302537.2995119/94‑1 (MQ=60)
CTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAG > SRR4302537.2964605/1‑94 (MQ=60)
TGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGA < SRR4302537.2576142/94‑1 (MQ=60)
TGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGA < SRR4302537.4817566/94‑1 (MQ=60)
TGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGA > SRR4302537.3402112/1‑94 (MQ=60)
TGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGA < SRR4302537.1879755/94‑1 (MQ=60)
GAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGAT > SRR4302537.80224/1‑94 (MQ=60)
GAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGAT < SRR4302537.3201006/94‑1 (MQ=60)
GAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGAT > SRR4302537.5836021/1‑94 (MQ=60)
GTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTT < SRR4302537.3083295/94‑1 (MQ=60)
TGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTG > SRR4302537.3002767/1‑94 (MQ=60)
TGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTG < SRR4302537.4945626/94‑1 (MQ=60)
GGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTG < SRR4302537.857329/94‑1 (MQ=60)
AGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTT < SRR4302537.5050429/94‑1 (MQ=60)
GTCGCCAGGAGCATAGCTAACTATGTGCCTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTC < SRR4302537.3033687/94‑1 (MQ=60)
GTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTC > SRR4302537.6249388/1‑94 (MQ=60)
TCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCG < SRR4302537.5782509/94‑1 (MQ=60)
CGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGT < SRR4302537.5143927/94‑1 (MQ=60)
GCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTT < SRR4302537.5813418/94‑1 (MQ=60)
GCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTT < SRR4302537.4620242/94‑1 (MQ=60)
CCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTG > SRR4302537.5775394/1‑94 (MQ=60)
CAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGG < SRR4302537.2366093/94‑1 (MQ=60)
CAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGG < SRR4302537.753704/94‑1 (MQ=60)
AGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGA > SRR4302537.819563/1‑94 (MQ=60)
GGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAG < SRR4302537.6045041/94‑1 (MQ=60)
GAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGC < SRR4302537.4635400/94‑1 (MQ=60)
AGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCC > SRR4302537.1414849/1‑94 (MQ=60)
AGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCC < SRR4302537.2815531/94‑1 (MQ=60)
AGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCC > SRR4302537.4752074/1‑94 (MQ=60)
AGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCC > SRR4302537.4992454/1‑94 (MQ=60)
GCATAGCTAGCTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCT < SRR4302537.1583738/94‑1 (MQ=60)
CATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTG > SRR4302537.3701130/1‑94 (MQ=60)
CATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGGTGGAGCCTG > SRR4302537.5477743/1‑94 (MQ=60)
ATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGG > SRR4302537.904917/1‑94 (MQ=60)
ATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGG < SRR4302537.4052285/94‑1 (MQ=60)
AGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCC > SRR4302537.180330/1‑94 (MQ=60)
GCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCT < SRR4302537.6509539/94‑1 (MQ=60)
CTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTA > SRR4302537.5169753/1‑94 (MQ=60)
CTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTA > SRR4302537.3824894/1‑94 (MQ=60)
CTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCATCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTA > SRR4302537.4046223/1‑94 (MQ=60)
TAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTAT < SRR4302537.231064/94‑1 (MQ=60)
TAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTAT > SRR4302537.344978/1‑94 (MQ=60)
CTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCA < SRR4302537.1161740/94‑1 (MQ=60)
TATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAG < SRR4302537.1925444/94‑1 (MQ=60)
TATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAG < SRR4302537.2133470/94‑1 (MQ=60)
ATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGG > SRR4302537.1814889/1‑94 (MQ=60)
ATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGG > SRR4302537.5688305/1‑94 (MQ=60)
TGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGC < SRR4302537.5264012/94‑1 (MQ=60)
TGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGC < SRR4302537.2134112/94‑1 (MQ=60)
TGTGACTGGTGCGAATGAAGGAAGCCAAAGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGC > SRR4302537.2215815/1‑94 (MQ=60)
GTGACTGGTGCGAAGGAAGGAAGCCATCGCCGTCACAAGCTGAATAGCGGCGTGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCC < SRR4302537.6252300/94‑1 (MQ=60)
GACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTC < SRR4302537.4468082/94‑1 (MQ=60)
GACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTC > SRR4302537.2368401/1‑94 (MQ=60)
GACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTC < SRR4302537.1292336/94‑1 (MQ=60)
ACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCC > SRR4302537.1342699/1‑94 (MQ=60)
CTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCG > SRR4302537.5083232/1‑94 (MQ=60)
TGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGT > SRR4302537.2635482/1‑94 (MQ=60)
GGTGCGAATGAAGGAAGCCAACGCGGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTC < SRR4302537.3776191/94‑1 (MQ=60)
GGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTC > SRR4302537.5664544/1‑94 (MQ=60)
GTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCG > SRR4302537.6319629/1‑94 (MQ=60)
CGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAG > SRR4302537.3192877/1‑94 (MQ=60)
GAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGA > SRR4302537.5752886/1‑94 (MQ=60)
GAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGA > SRR4302537.4009513/1‑94 (MQ=60)
AATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGAC > SRR4302537.4447138/1‑94 (MQ=60)
AATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGAC < SRR4302537.4553026/94‑1 (MQ=60)
AATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGAC < SRR4302537.5045647/94‑1 (MQ=60)
AATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGAC > SRR4302537.2827496/1‑94 (MQ=60)
ATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACC < SRR4302537.5782039/94‑1 (MQ=60)
ATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACC < SRR4302537.2044251/94‑1 (MQ=60)
ATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACC < SRR4302537.5792461/94‑1 (MQ=60)
TGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCG > SRR4302537.4516203/1‑94 (MQ=60)
TGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGCAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCG > SRR4302537.1841668/1‑94 (MQ=60)
AAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCA > SRR4302537.2606193/1‑94 (MQ=60)
GAAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGA < SRR4302537.5854925/94‑1 (MQ=60)
AAGCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAG < SRR4302537.6187781/94‑1 (MQ=60)
GCCAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTT > SRR4302537.3861485/1‑94 (MQ=60)
CAACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTC < SRR4302537.6125801/94‑1 (MQ=60)
AACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCG > SRR4302537.5450222/1‑94 (MQ=60)
AACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCG < SRR4302537.1778796/94‑1 (MQ=60)
AACGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGCTTCG > SRR4302537.1280811/1‑94 (MQ=60)
CGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCA > SRR4302537.4939577/1‑94 (MQ=60)
CGCCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCA > SRR4302537.1984210/1‑94 (MQ=60)
CCTTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAG < SRR4302537.789890/94‑1 (MQ=60)
CCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAG > SRR4302537.3757001/1‑94 (MQ=60)
CCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAG < SRR4302537.5351472/94‑1 (MQ=60)
CCGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAG < SRR4302537.3511789/94‑1 (MQ=60)
CGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGA > SRR4302537.2216032/1‑94 (MQ=60)
CGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGA < SRR4302537.4773890/94‑1 (MQ=60)
CGTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGA > SRR4302537.4672552/1‑94 (MQ=60)
GTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAA > SRR4302537.3072473/1‑94 (MQ=60)
GTCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAA > SRR4302537.2040555/1‑94 (MQ=60)
TCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAA > SRR4302537.1438009/1‑94 (MQ=60)
TCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAA < SRR4302537.5622393/94‑1 (MQ=60)
TCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAA > SRR4302537.4800113/1‑94 (MQ=60)
TCACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAA < SRR4302537.2996932/94‑1 (MQ=60)
CACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAAC > SRR4302537.1069204/1‑94 (MQ=60)
CACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAAC > SRR4302537.2370848/1‑94 (MQ=60)
ACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACT > SRR4302537.5682654/1‑94 (MQ=60)
ACAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACT > SRR4302537.5207509/1‑94 (MQ=60)
CAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTT > SRR4302537.4378011/1‑94 (MQ=60)
CAAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTT < SRR4302537.4231357/94‑1 (MQ=60)
AAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTA < SRR4302537.1153235/94‑1 (MQ=60)
AAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTA > SRR4302537.3142592/1‑94 (MQ=60)
AAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTA > SRR4302537.3322901/1‑94 (MQ=60)
AAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAAATTA > SRR4302537.4518538/1‑94 (MQ=60)
AAGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCGGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTA > SRR4302537.3483373/1‑94 (MQ=60)
AGCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAA < SRR4302537.2510156/94‑1 (MQ=60)
GCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAT > SRR4302537.5012602/1‑94 (MQ=60)
GCTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAT > SRR4302537.2738738/1‑94 (MQ=60)
CTGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATC > SRR4302537.155188/1‑94 (MQ=60)
TGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGTCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCC < SRR4302537.5735924/94‑1 (MQ=60)
TGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCC > SRR4302537.4974606/1‑94 (MQ=60)
TGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCC > SRR4302537.4746302/1‑94 (MQ=60)
TGAATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCC > SRR4302537.3644334/1‑94 (MQ=60)
GGATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCC > SRR4302537.6141101/1‑94 (MQ=60)
AATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCC < SRR4302537.6071581/94‑1 (MQ=60)
AATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCT‑CGGCGAAGACCGCAGGgggtttggcaaaaaattaattccct > SRR4302537.1221100/1‑69 (MQ=60)
ATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCT > SRR4302537.3243967/1‑94 (MQ=60)
ATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCT > SRR4302537.4950330/1‑94 (MQ=60)
ATAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCT < SRR4302537.2562250/94‑1 (MQ=60)
TAGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTG < SRR4302537.2030749/94‑1 (MQ=60)
AGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCACGAAACTTAATCCCCTGC > SRR4302537.5128869/1‑94 (MQ=60)
AGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGC > SRR4302537.6184909/1‑94 (MQ=60)
AGCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGC > SRR4302537.5007648/1‑94 (MQ=60)
GCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCG < SRR4302537.852871/94‑1 (MQ=60)
GCGACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCG > SRR4302537.4202152/1‑94 (MQ=60)
GACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTA > SRR4302537.2708075/1‑94 (MQ=60)
ACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAG < SRR4302537.921750/94‑1 (MQ=60)
ACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAG > SRR4302537.3582830/1‑94 (MQ=60)
ACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAG > SRR4302537.825219/1‑94 (MQ=60)
ACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAG < SRR4302537.4860/94‑1 (MQ=60)
ACGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGGTTCGCAAGAAACTTAATCCCCTGCGTAG > SRR4302537.5141153/1‑94 (MQ=60)
CGGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGA < SRR4302537.224570/94‑1 (MQ=60)
GGGTAGAAAAGATTTTTTCGTTGGAGCCTGGCCTATCCGGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGAC < SRR4302537.2119103/94‑1 (MQ=60)
GGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGAC < SRR4302537.4171756/94‑1 (MQ=60)
GGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGAC > SRR4302537.3905087/1‑94 (MQ=60)
GGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGAC < SRR4302537.1356313/94‑1 (MQ=60)
GGGTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGAC > SRR4302537.3627143/1‑94 (MQ=60)
GTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGG > SRR4302537.4203140/1‑94 (MQ=60)
GTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGG > SRR4302537.5921461/1‑94 (MQ=60)
GTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGG > SRR4302537.588204/1‑94 (MQ=60)
GTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGG > SRR4302537.368766/1‑94 (MQ=60)
|
CGGCAACTGAGTGAGTCGCCAGGAGCATAGCTAACTATGTGACTGGTGCGAATGAAGGAAGCCAACGCCGTCACAAGCTGAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGG > NC_000913/4177257‑4177441
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
