Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,185,074	A→T	Q716L (CAG→CTG)	rpoC →	RNA polymerase beta prime subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,185,074	0	A	T	100.0%	844.3 / NA	236	Q716L (CAG→CTG)	rpoC	RNA polymerase beta prime subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (129/107); total (129/107)

Only 100 of 239 total aligned reads displayed.

GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC  >  NC_000913/4184984‑4185163

gggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTgg                                                                                         <  1:3512811/93‑1 (MQ=255)

gggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTgg                                                                                         <  1:3202314/93‑1 (MQ=255)

gggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTgg                                                                                         <  2:2858414/93‑1 (MQ=255)

gggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTgg                                                                                         >  2:805516/1‑93 (MQ=255)

 ggCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGt                                                                                        <  2:4934722/93‑1 (MQ=255)

  gCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGtt                                                                                       <  2:2560992/93‑1 (MQ=255)

    tGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTc                                                                                     <  2:1680154/93‑1 (MQ=255)

    tGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTc                                                                                     >  1:479694/1‑93 (MQ=255)

     gcggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTcc                                                                                    >  2:5381668/1‑93 (MQ=255)

     gcggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTcc                                                                                    >  2:5488915/1‑93 (MQ=255)

      cggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCt                                                                                   <  1:5669927/93‑1 (MQ=255)

       ggcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCtt                                                                                  >  2:250635/1‑93 (MQ=255)

        gcgAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTc                                                                                 <  2:2628631/93‑1 (MQ=255)

          gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCaa                                                                               <  1:4838449/93‑1 (MQ=255)

          gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCaa                                                                               >  1:1217620/1‑93 (MQ=255)

          gAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCaa                                                                               >  2:4374538/1‑93 (MQ=255)

           aaCGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAAc                                                                              <  1:5966915/93‑1 (MQ=255)

              gATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGc                                                                           <  1:19479/93‑1 (MQ=255)

               aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCa                                                                          >  2:2240021/1‑93 (MQ=255)

               aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCa                                                                          >  2:1535290/1‑93 (MQ=255)

               aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCa                                                                          >  2:5558631/1‑93 (MQ=255)

               aTCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCa                                                                          >  1:4047075/1‑93 (MQ=255)

                tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCAt                                                                         <  1:4294367/93‑1 (MQ=255)

                tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCAt                                                                         <  1:4674451/93‑1 (MQ=255)

                tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCAt                                                                         <  1:933546/93‑1 (MQ=255)

                tCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCAt                                                                         <  1:2714045/93‑1 (MQ=255)

                   tgtATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTa                                                                      <  1:1773375/93‑1 (MQ=255)

                     tATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACa                                                                    <  1:2120021/93‑1 (MQ=255)

                      aTCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACat                                                                   >  2:4684580/1‑93 (MQ=255)

                       tCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACatg                                                                  <  2:6149985/93‑1 (MQ=255)

                        ccAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACatga                                                                 <  1:1928089/93‑1 (MQ=255)

                        ccAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACatga                                                                 >  1:682874/1‑93 (MQ=255)

                        ccAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACatga                                                                 >  1:5171733/1‑93 (MQ=255)

                          aaaGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACatgatg                                                               <  1:3004229/93‑1 (MQ=255)

                               gatgatGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGa                                                          >  2:4091150/1‑93 (MQ=255)

                                atgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGAc                                                         >  1:1035941/1‑93 (MQ=255)

                                 tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATTGCCGACt                                                        >  2:1853280/1‑93 (MQ=255)

                                 tgatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACt                                                        >  2:2996257/1‑93 (MQ=255)

                                  gatgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGG‑TTCCTTCAACAGCATCTACCTGATGGCCGACttc                                                      >  1:1074470/1‑91 (MQ=255)

                                   atgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTcc                                                      >  2:1271701/1‑93 (MQ=255)

                                    tgcaTAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCg                                                     >  1:5850816/4‑93 (MQ=255)

                                    tgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCg                                                     >  1:5505608/1‑93 (MQ=255)

                                    tgGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCg                                                     <  1:3253578/93‑1 (MQ=255)

                                     ggATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                                    <  1:2325800/93‑1 (MQ=255)

                                     ggATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCgg                                                    >  1:1691423/1‑93 (MQ=255)

                                      gATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                                   >  2:3922301/1‑93 (MQ=255)

                                      gATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGt                                                   <  1:1638884/93‑1 (MQ=255)

                                       aTAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTg                                                  <  1:3319290/93‑1 (MQ=255)

                                       aTAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTg                                                  <  2:296661/93‑1 (MQ=255)

                                        tAACCTGCAAACTGAAACCATGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTgc                                                 >  2:4857304/1‑93 (MQ=255)

                                           ccTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTGCATGATGGCCGACTCCGGTGcgcg                                              >  2:1179562/1‑93 (MQ=255)

                                           ccTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcg                                              >  2:5095853/1‑93 (MQ=255)

                                           ccTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcg                                              <  2:462352/93‑1 (MQ=255)

                                           ccTGCAAACTGAAACCGTGATTAACCGTGACGGGCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGATTCCGGTGcgcg                                              >  1:454080/1‑93 (MQ=255)

                                            cTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGcgcgg                                             >  2:1420193/1‑92 (MQ=255)

                                            cTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGt                                             >  1:2661556/1‑93 (MQ=255)

                                             tGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAAAAGCATCTACATGATGGCCGACTCCGGGGCGCGTg                                            >  2:6127371/1‑93 (MQ=255)

                                              gCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTgg                                           >  1:4429159/1‑93 (MQ=255)

                                                aaaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGtt                                         >  1:6277179/1‑93 (MQ=255)

                                                aaaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGtt                                         >  2:2749229/1‑93 (MQ=255)

                                                aaaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGtt                                         >  1:3825786/1‑93 (MQ=255)

                                                aaaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTCGtt                                         >  2:3256845/1‑93 (MQ=255)

                                                 aaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                                        >  2:3100673/1‑93 (MQ=255)

                                                 aaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                                        >  1:6236354/1‑93 (MQ=255)

                                                 aaCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTc                                        <  1:905255/93‑1 (MQ=255)

                                                  aCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCt                                       <  2:3460031/93‑1 (MQ=255)

                                                  aCTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCt                                       >  1:499172/1‑93 (MQ=255)

                                                   cTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTg                                      <  1:3550227/93‑1 (MQ=255)

                                                   cTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGCGCGCGTGGTTCTg                                      >  1:4163948/1‑93 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     <  2:3620157/93‑1 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     <  1:3048274/93‑1 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     <  2:4176612/93‑1 (MQ=255)

                                                    tGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGGTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGc                                     >  2:1169191/1‑93 (MQ=255)

                                                     gAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCg                                    >  2:2436196/1‑93 (MQ=255)

                                                     gAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCg                                    >  2:696369/1‑93 (MQ=255)

                                                      aaaCCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCgg                                   <  2:2074635/93‑1 (MQ=255)

                                                       aaCCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACCGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGc                                  >  1:339588/1‑93 (MQ=255)

                                                         ccGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGcac                                >  1:6023540/1‑93 (MQ=255)

                                                            tGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGa                             <  2:3733429/93‑1 (MQ=255)

                                                             gATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAt                            >  2:6335730/1‑93 (MQ=255)

                                                              aTTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAtt                           >  2:778567/1‑93 (MQ=255)

                                                              aTTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAtt                           <  1:2402746/93‑1 (MQ=255)

                                                              aTTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAtt                           <  2:1232796/93‑1 (MQ=255)

                                                              aTTAACCGTGACGGTCAGCAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAtt                           <  2:896753/93‑1 (MQ=255)

                                                               ttAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTc                          >  1:5588361/1‑93 (MQ=255)

                                                                 aaCCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGt                        >  2:1341349/1‑93 (MQ=255)

                                                                  aCCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc                       >  1:2615908/1‑93 (MQ=255)

                                                                  aCCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTc                       <  1:2090911/93‑1 (MQ=255)

                                                                  aCCGTGACGGTCAGGAACAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGCGGTTCTGCGGCACAGATTCGTc                       <  2:1041163/93‑1 (MQ=255)

                                                                   ccGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCa                      >  2:2126908/1‑93 (MQ=255)

                                                                         cGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGc                >  2:5326792/1‑93 (MQ=255)

                                                                            tCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTgg             <  2:177728/93‑1 (MQ=255)

                                                                                 aaGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGc        >  2:2294287/1‑93 (MQ=255)

                                                                                    agaAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTg     >  1:367073/1‑93 (MQ=255)

                                                                                     gaAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTgg    >  1:5722389/1‑93 (MQ=255)

                                                                                     gaAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTgg    <  2:5664327/93‑1 (MQ=255)

                                                                                     aaaGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTgg    <  2:3215877/92‑1 (MQ=255)

                                                                                      aaGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGt   >  1:2186601/1‑93 (MQ=255)

                                                                                       aGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTc  >  1:5322686/1‑93 (MQ=255)

                                                                                       aGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTc  >  2:3799438/1‑93 (MQ=255)

GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC  >  NC_000913/4184984‑4185163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  NC_000913/4184981‑4185167

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCT                                                                                               >  SRR4302537.2291305/1‑94 (MQ=60)

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCT                                                                                               <  SRR4302537.2674193/94‑1 (MQ=60)

 CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTG                                                                                              >  SRR4302537.3325788/1‑94 (MQ=60)

 CTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTG                                                                                              <  SRR4302537.6326159/94‑1 (MQ=60)

  TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGG                                                                                             <  SRR4302537.1358056/94‑1 (MQ=60)

  TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGG                                                                                             >  SRR4302537.355333/1‑94 (MQ=60)

  TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGG                                                                                             <  SRR4302537.3648217/94‑1 (MQ=60)

  TGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGG                                                                                             >  SRR4302537.3941939/1‑94 (MQ=60)

   GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGT                                                                                            <  SRR4302537.3224827/94‑1 (MQ=60)

   GGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGT                                                                                            <  SRR4302537.3537660/94‑1 (MQ=60)

    GGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTT                                                                                           >  SRR4302537.357980/1‑94 (MQ=60)

      CTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTC                                                                                         >  SRR4302537.482982/1‑94 (MQ=60)

         CGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTT                                                                                      <  SRR4302537.5708725/94‑1 (MQ=60)

            CGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAA                                                                                   >  SRR4302537.1226086/1‑94 (MQ=60)

             GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAAC                                                                                  <  SRR4302537.4871850/94‑1 (MQ=60)

             GAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAAC                                                                                  >  SRR4302537.4350859/1‑94 (MQ=60)

              AACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACA                                                                                 <  SRR4302537.6007870/94‑1 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCA                                                                              >  SRR4302537.4075373/1‑94 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCA                                                                              <  SRR4302537.19634/94‑1 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCA                                                                              >  SRR4302537.3688879/1‑94 (MQ=60)

                 GATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCA                                                                              >  SRR4302537.3145539/1‑94 (MQ=60)

                   TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATC                                                                            <  SRR4302537.4324224/94‑1 (MQ=60)

                   TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATC                                                                            <  SRR4302537.2732997/94‑1 (MQ=60)

                   TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATC                                                                            <  SRR4302537.4706787/94‑1 (MQ=60)

                   TCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATC                                                                            <  SRR4302537.939978/94‑1 (MQ=60)

                     GTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTA                                                                          <  SRR4302537.1727780/94‑1 (MQ=60)

                     GTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTA                                                                          >  SRR4302537.1949757/1‑94 (MQ=60)

                      TGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTAC                                                                         <  SRR4302537.497860/94‑1 (MQ=60)

                      TGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTAC                                                                         <  SRR4302537.1785728/94‑1 (MQ=60)

                       GTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACA                                                                        >  SRR4302537.6469588/1‑94 (MQ=60)

                        TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAAGAGCATCTACAT                                                                       >  SRR4302537.4115140/1‑94 (MQ=60)

                        TATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACAT                                                                       <  SRR4302537.2134943/94‑1 (MQ=60)

                         ATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATG                                                                      <  SRR4302537.4435154/94‑1 (MQ=60)

                         ATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATG                                                                      >  SRR4302537.5779982/1‑94 (MQ=60)

                         ATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATG                                                                      >  SRR4302537.37389/1‑94 (MQ=60)

                          TCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGA                                                                     <  SRR4302537.2062593/94‑1 (MQ=60)

                          TCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGA                                                                     >  SRR4302537.5207340/1‑94 (MQ=60)

                          TCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGA                                                                     >  SRR4302537.687554/1‑94 (MQ=60)

                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGAT                                                                    <  SRR4302537.2433311/94‑1 (MQ=60)

                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGAT                                                                    <  SRR4302537.1941468/94‑1 (MQ=60)

                           CCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGAT                                                                    >  SRR4302537.732406/1‑94 (MQ=60)

                            CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATG                                                                   >  SRR4302537.5595807/1‑94 (MQ=60)

                            CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATG                                                                   <  SRR4302537.5909962/94‑1 (MQ=60)

                            CAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATG                                                                   <  SRR4302537.1405065/94‑1 (MQ=60)

                             AAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGG                                                                  <  SRR4302537.1923203/94‑1 (MQ=60)

                             AAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGG                                                                  <  SRR4302537.3025153/94‑1 (MQ=60)

                               AGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCC                                                                <  SRR4302537.1109459/94‑1 (MQ=60)

                                 CGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGA                                                              <  SRR4302537.5233672/94‑1 (MQ=60)

                                  GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                                             <  SRR4302537.631610/94‑1 (MQ=60)

                                  GATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGAC                                                             >  SRR4302537.1043074/1‑94 (MQ=60)

                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                                            <  SRR4302537.2596421/94‑1 (MQ=60)

                                   ATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACT                                                            >  SRR4302537.927680/1‑94 (MQ=60)

                                    TGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGG‑TTCCTTCAACAGCATCTACCTGATGGCCGACTTC                                                          >  SRR4302537.1081870/1‑94 (MQ=60)

                                     GATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCC                                                          <  SRR4302537.1808458/94‑1 (MQ=60)

                                      ATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCG                                                         <  SRR4302537.4850164/94‑1 (MQ=60)

                                      ATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCG                                                         >  SRR4302537.5543204/1‑94 (MQ=60)

                                      ATGCATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCG                                                         >  SRR4302537.5890954/1‑94 (MQ=60)

                                       TGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGG                                                        <  SRR4302537.3276524/94‑1 (MQ=60)

                                       TGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGG                                                        >  SRR4302537.1703263/1‑94 (MQ=60)

                                        GGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGT                                                       <  SRR4302537.2342210/94‑1 (MQ=60)

                                         GATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTG                                                      <  SRR4302537.1650366/94‑1 (MQ=60)

                                          ATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGC                                                     <  SRR4302537.3342768/94‑1 (MQ=60)

                                          ATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGC                                                     >  SRR4302537.736669/1‑94 (MQ=60)

                                             ACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCG                                                  >  SRR4302537.3261145/1‑94 (MQ=60)

                                             ACCTGCAAACTGAAACCGTGATTAACCGTGACGGGCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGATTCCGGTGCGCG                                                  >  SRR4302537.457217/1‑94 (MQ=60)

                                              CCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGT                                                 >  SRR4302537.2680149/1‑94 (MQ=60)

                                               CTGCAAACTGAAGCCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                                                <  SRR4302537.5146418/94‑1 (MQ=60)

                                               CTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                                                <  SRR4302537.6048424/94‑1 (MQ=60)

                                               CTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                                                >  SRR4302537.564564/1‑94 (MQ=60)

                                               CTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                                                >  SRR4302537.471798/1‑94 (MQ=60)

                                               CTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTG                                                >  SRR4302537.239312/1‑94 (MQ=60)

                                                TGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGG                                               >  SRR4302537.4459746/1‑94 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATTATGGCCGACTCCGGTGCGCGTGGTT                                             <  SRR4302537.5008817/94‑1 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             <  SRR4302537.5936880/94‑1 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             >  SRR4302537.6320244/1‑94 (MQ=60)

                                                  CAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTT                                             >  SRR4302537.3852613/1‑94 (MQ=60)

                                                   AAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTC                                            >  SRR4302537.6279241/1‑94 (MQ=60)

                                                    AACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                                           >  SRR4302537.502602/1‑94 (MQ=60)

                                                    AACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCT                                           <  SRR4302537.911503/94‑1 (MQ=60)

                                                    AACTGAAACCGGGATTAACCGTGACGGTCAGGAAGAGTAGATGGATTCCTTCAACAGCATCTACATGATGGACGACTCCCGTGCGCGTGGgtat                                           >  SRR4302537.883405/1‑90 (MQ=60)

                                                     ACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGCGCGCGTGGTTCTG                                          >  SRR4302537.4193029/1‑94 (MQ=60)

                                                      CTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGC                                         <  SRR4302537.3575302/94‑1 (MQ=60)

                                                       TGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                                        <  SRR4302537.3069513/94‑1 (MQ=60)

                                                       TGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCG                                        >  SRR4302537.3331751/1‑94 (MQ=60)

                                                         AAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACCGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGC                                      >  SRR4302537.341942/1‑94 (MQ=60)

                                                         AAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGC                                      >  SRR4302537.5324384/1‑94 (MQ=60)

                                                          AACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCA                                     <  SRR4302537.983765/94‑1 (MQ=60)

                                                           ACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCAC                                    >  SRR4302537.3381532/1‑94 (MQ=60)

                                                           ACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCAC                                    >  SRR4302537.6064929/1‑94 (MQ=60)

                                                               TGATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGAT                                >  SRR4302537.1640178/1‑94 (MQ=60)

                                                                 ATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC                              <  SRR4302537.2419664/94‑1 (MQ=60)

                                                                 ATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC                              <  SRR4302537.4685857/94‑1 (MQ=60)

                                                                 ATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTC                              >  SRR4302537.5626573/1‑94 (MQ=60)

                                                                 ATTAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGAGTGGTTCTGCGGCACAGATTC                              >  SRR4302537.3102427/1‑94 (MQ=60)

                                                                   TAACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCGGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGT                            <  SRR4302537.1053918/94‑1 (MQ=60)

                                                                    AACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC                           <  SRR4302537.3536100/94‑1 (MQ=60)

                                                                    AACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTC                           >  SRR4302537.2634203/1‑94 (MQ=60)

                                                                    AACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGACGACTCCGGAGCGCGTGGTTCTGCGGCACAGATTCGTC                           >  SRR4302537.5717104/1‑94 (MQ=60)

                                                                     ACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          >  SRR4302537.6273546/1‑94 (MQ=60)

                                                                     ACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          <  SRR4302537.2924618/94‑1 (MQ=60)

                                                                     ACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          <  SRR4302537.4693766/94‑1 (MQ=60)

                                                                     ACCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCA                          <  SRR4302537.2105654/94‑1 (MQ=60)

                                                                      CCGTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAG                         <  SRR4302537.5647108/94‑1 (MQ=60)

                                                                        GTGCCGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT                       <  SRR4302537.3050986/94‑1 (MQ=60)

                                                                        GTGACGGTCAGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACGTGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCT                       >  SRR4302537.1682483/1‑94 (MQ=60)

                                                                                 AGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCTCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAT              >  SRR4302537.4277979/1‑94 (MQ=60)

                                                                                 AGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAT              >  SRR4302537.2861796/1‑94 (MQ=60)

                                                                                 AGGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTAT              <  SRR4302537.21863/94‑1 (MQ=60)

                                                                                  GGAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATG             <  SRR4302537.552244/94‑1 (MQ=60)

                                                                                   GAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGC            <  SRR4302537.2229709/94‑1 (MQ=60)

                                                                                   GAAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGC            >  SRR4302537.2061159/1‑94 (MQ=60)

                                                                                    AAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCG           <  SRR4302537.2718141/94‑1 (MQ=60)

                                                                                    AAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCG           >  SRR4302537.221723/1‑94 (MQ=60)

                                                                                    AAGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCG           <  SRR4302537.2658885/94‑1 (MQ=60)

                                                                                     AGAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGT          >  SRR4302537.4485405/1‑94 (MQ=60)

                                                                                      GAGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTG         >  SRR4302537.369621/1‑94 (MQ=60)

                                                                                       AGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGG        <  SRR4302537.2129772/94‑1 (MQ=60)

                                                                                       AGAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGG        >  SRR4302537.5761560/1‑94 (MQ=60)

                                                                                        GAAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGT       >  SRR4302537.2202005/1‑94 (MQ=60)

                                                                                         AAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC      <  SRR4302537.3942344/94‑1 (MQ=60)

                                                                                         AAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC      >  SRR4302537.5359216/1‑94 (MQ=60)

                                                                                         AAGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTC      >  SRR4302537.996296/1‑94 (MQ=60)

                                                                                          AGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCT     <  SRR4302537.3382674/94‑1 (MQ=60)

                                                                                          AGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCT     >  SRR4302537.3923590/1‑94 (MQ=60)

                                                                                          AGCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCT     <  SRR4302537.6240982/94‑1 (MQ=60)

                                                                                           GCTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTG    <  SRR4302537.2128289/94‑1 (MQ=60)

                                                                                            CTGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGA   >  SRR4302537.6503520/1‑94 (MQ=60)

                                                                                             TGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  SRR4302537.1040591/1‑94 (MQ=60)

                                                                                             TGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  <  SRR4302537.3092152/94‑1 (MQ=60)

TCTGGGCTGCGGCGAACGATCGTGTATCCAAAGCGATGATGGATAACCTGCAAACTGAAACCGTGATTAACCGTGACGGTCAGGAAGAGAAGCAGGTTTCCTTCAACAGCATCTACATGATGGCCGACTCCGGTGCGCGTGGTTCTGCGGCACAGATTCGTCAGCTTGCTGGTATGCGTGGTCTGAT  >  NC_000913/4184981‑4185167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`