Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,230,115	A→G	V233A (GTA→GCA)	lysC ←	aspartokinase III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,230,115	0	A	G	100.0%	814.5 / NA	231	V233A (GTA→GCA)	lysC	aspartokinase III
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (137/94); total (137/94)

Only 100 of 236 total aligned reads displayed.

TTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTACGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTA  >  NC_000913/4230026‑4230204

 tGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATAAATGCGTTTTGCTGCGGAAACTGcgcg                                                                                       <  2:4113031/93‑1 (MQ=255)

  gCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGt                                                                                      <  2:1914371/93‑1 (MQ=255)

   ccGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTg                                                                                     <  2:4401867/93‑1 (MQ=255)

   ccGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTg                                                                                     <  1:874134/93‑1 (MQ=255)

   ccGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTg                                                                                     <  1:6173644/93‑1 (MQ=255)

     ggATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGa                                                                                   <  1:4006944/93‑1 (MQ=255)

      gATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAt                                                                                  <  2:5955420/93‑1 (MQ=255)

      gATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAt                                                                                  <  2:5287534/93‑1 (MQ=255)

      gATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAt                                                                                  >  1:142160/1‑93 (MQ=255)

      gATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAt                                                                                  >  1:1591110/1‑93 (MQ=255)

       aTGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATc                                                                                 <  1:4764172/93‑1 (MQ=255)

       aTGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATc                                                                                 >  1:5373335/1‑93 (MQ=255)

        tGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCg                                                                                >  1:3070732/1‑93 (MQ=255)

        tGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCg                                                                                >  1:2437368/1‑93 (MQ=255)

         gCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCgg                                                                               >  1:1015108/1‑93 (MQ=255)

           aGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCggtg                                                                             >  2:4316518/1‑93 (MQ=255)

           aGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCggtg                                                                             <  2:2965616/93‑1 (MQ=255)

            gTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCggtgg                                                                            >  2:3039729/1‑93 (MQ=255)

             tACTTTTGCACCAAAATGTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCggtggt                                                                           <  2:1857440/93‑1 (MQ=255)

             tACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCggtggt                                                                           >  1:1861081/1‑93 (MQ=255)

             tACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCggtggt                                                                           <  1:4235506/93‑1 (MQ=255)

               cTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGgtgt                                                                         >  1:5180124/1‑93 (MQ=255)

                ttttGCACCAATAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTa                                                                        <  2:4908758/93‑1 (MQ=255)

                ttttGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTa                                                                        >  2:160378/1‑93 (MQ=255)

                ttttGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTa                                                                        >  1:5919559/1‑93 (MQ=255)

                 tttGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAg                                                                       >  1:5742012/1‑93 (MQ=255)

                  ttGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGa                                                                      <  1:3628387/93‑1 (MQ=255)

                  ttGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGa                                                                      <  2:3283953/93‑1 (MQ=255)

                     cACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGc                                                                   >  1:2394982/1‑93 (MQ=255)

                      aCCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGcc                                                                  >  1:1734290/1‑93 (MQ=255)

                        cAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCg                                                                >  1:5521742/1‑93 (MQ=255)

                        cAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCg                                                                >  1:1826534/1‑93 (MQ=255)

                         aaaaGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCgg                                                               >  2:1176583/1‑93 (MQ=255)

                         aaaaGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCgg                                                               >  2:1083083/1‑93 (MQ=255)

                          aaaGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCggg                                                              >  1:2289131/1‑93 (MQ=255)

                           aaGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGa                                                             <  2:3787115/93‑1 (MQ=255)

                            aGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGAc                                                            >  1:1626189/1‑93 (MQ=255)

                               tGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGCCGTc                                                         >  2:105629/1‑93 (MQ=255)

                               tGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTc                                                         <  1:960694/93‑1 (MQ=255)

                               tGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTc                                                         <  1:2326006/93‑1 (MQ=255)

                                gCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGGCGTCg                                                        >  2:3350733/1‑93 (MQ=255)

                                gCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCg                                                        >  1:3038372/1‑93 (MQ=255)

                                 ccATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCgg                                                       >  2:28365/1‑93 (MQ=255)

                                  cATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGt                                                      >  1:5837107/1‑93 (MQ=255)

                                   aTCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTc                                                     >  1:904008/1‑93 (MQ=255)

                                   aTCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTc                                                     >  2:3635432/1‑93 (MQ=255)

                                    tctcTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTcc                                                    >  2:2532625/1‑93 (MQ=255)

                                    tctcTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTcc                                                    >  1:781887/1‑93 (MQ=255)

                                    tctcTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTcc                                                    >  1:2450546/1‑93 (MQ=255)

                                      tctGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAg                                                  >  2:1456711/1‑93 (MQ=255)

                                       ctGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGa                                                 <  1:1067851/93‑1 (MQ=255)

                                       ctGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGa                                                 <  1:1085242/93‑1 (MQ=255)

                                       ctGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGa                                                 <  1:1231394/93‑1 (MQ=255)

                                       ctGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGa                                                 <  1:5660446/93‑1 (MQ=255)

                                         gCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGata                                               >  2:5173689/1‑93 (MQ=255)

                                         gCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGata                                               >  2:3870064/1‑93 (MQ=255)

                                         gCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGata                                               >  1:3743071/1‑93 (MQ=255)

                                          ccGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGatat                                              <  1:4428789/93‑1 (MQ=255)

                                           cGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGCAGATGCCCGGGACGTCGGTCCAGATATc                                             <  1:4641205/93‑1 (MQ=255)

                                            gCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCa                                            >  2:4005747/1‑93 (MQ=255)

                                             cTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCaa                                           >  2:6058626/1‑93 (MQ=255)

                                              ttCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAac                                          <  1:3505234/93‑1 (MQ=255)

                                               tCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAaca                                         <  1:6435845/93‑1 (MQ=255)

                                               tCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAaca                                         <  1:2523151/93‑1 (MQ=255)

                                                 ggCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACg                                       >  2:2910155/1‑93 (MQ=255)

                                                    aaaCGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACgaga                                    >  2:2130622/1‑93 (MQ=255)

                                                     aaCGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCATATATCAACACGAGAt                                   >  1:2829724/1‑93 (MQ=255)

                                                     aaCGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGAt                                   >  1:1617689/1‑93 (MQ=255)

                                                     aaCGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGAt                                   >  2:6143062/1‑93 (MQ=255)

                                                      aCGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATg                                  <  2:5473327/93‑1 (MQ=255)

                                                       cgcgATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGc                                 >  2:1698647/1‑93 (MQ=255)

                                                          gATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCgtg                              >  1:4116964/1‑93 (MQ=255)

                                                          gATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCgtg                              >  1:3718427/1‑93 (MQ=255)

                                                           aTTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCgtgt                             <  2:2650794/93‑1 (MQ=255)

                                                           aTTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCgtgt                             >  2:5912483/1‑93 (MQ=255)

                                                            tttCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTa                            >  1:2047807/1‑93 (MQ=255)

                                                            tttCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTa                            <  1:1286661/93‑1 (MQ=255)

                                                              tcatcaATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTaaa                          <  1:3382600/93‑1 (MQ=255)

                                                              tcatcaATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTaaa                          <  1:941572/93‑1 (MQ=255)

                                                                 tcaATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGcc                       >  2:5812663/1‑93 (MQ=255)

                                                                   aaTGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTc                     >  1:6304938/1‑93 (MQ=255)

                                                                    aTGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTcc                    >  2:628213/1‑93 (MQ=255)

                                                                      gCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGc                  <  2:2392063/93‑1 (MQ=255)

                                                                       cGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGcc                 >  2:5763797/1‑93 (MQ=255)

                                                                       cGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGcc                 <  1:5350631/93‑1 (MQ=255)

                                                                        gTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCa                <  1:405986/93‑1 (MQ=255)

                                                                         ttttGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAg               >  1:5259623/1‑93 (MQ=255)

                                                                         ttttGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCACATATCAACACGACATGCGTGTAAAGCCTCCGCCac               >  2:4641540/1‑92 (MQ=255)

                                                                           ttGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCa             >  2:4500483/1‑93 (MQ=255)

                                                                              ctgcGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAgg          <  2:5033810/93‑1 (MQ=255)

                                                                               tgcGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGc         >  1:600990/1‑93 (MQ=255)

                                                                                gcGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCt        <  2:5685831/93‑1 (MQ=255)

                                                                                gcGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCt        <  2:4532572/93‑1 (MQ=255)

                                                                                  ggAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGc      >  2:513429/1‑93 (MQ=255)

                                                                                  ggAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGc      >  2:4177820/1‑93 (MQ=255)

                                                                                  ggAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGc      >  2:2003805/1‑93 (MQ=255)

                                                                                   gAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGcg     >  1:2181122/1‑92 (MQ=255)

                                                                                   gAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGcc     >  2:4364263/1‑93 (MQ=255)

                                                                                   gAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGcc     >  2:748605/1‑93 (MQ=255)

                                                                                      aCTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGta  >  2:2299548/1‑93 (MQ=255)

TTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTACGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTA  >  NC_000913/4230026‑4230204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACGTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTACGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTATAAT  >  NC_000913/4230022‑4230208

AACGTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTG                                                                                               >  SRR4302537.3001609/1‑94 (MQ=60)

AACGTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTG                                                                                               <  SRR4302537.2881610/94‑1 (MQ=60)

AACGTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTG                                                                                               <  SRR4302537.93219/94‑1 (MQ=60)

AACGTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTG                                                                                               >  SRR4302537.4744982/1‑94 (MQ=60)

   GTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGC                                                                                            >  SRR4302537.3501275/1‑94 (MQ=60)

     TGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGT                                                                                          >  SRR4302537.4478106/1‑94 (MQ=60)

       CCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGG                                                                                        <  SRR4302537.6216164/94‑1 (MQ=60)

       CCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGG                                                                                        >  SRR4302537.1625760/1‑94 (MQ=60)

       CCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGG                                                                                        <  SRR4302537.880147/94‑1 (MQ=60)

         GGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAT                                                                                      <  SRR4302537.4034987/94‑1 (MQ=60)

         GGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAT                                                                                      >  SRR4302537.143169/1‑94 (MQ=60)

         GGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAT                                                                                      >  SRR4302537.5394992/1‑94 (MQ=60)

         GGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAT                                                                                      >  SRR4302537.1602232/1‑94 (MQ=60)

         GGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAT                                                                                      >  SRR4302537.5777197/1‑94 (MQ=60)

         GGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAT                                                                                      <  SRR4302537.1835927/94‑1 (MQ=60)

          GATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATC                                                                                     >  SRR4302537.5410085/1‑94 (MQ=60)

           ATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCG                                                                                    >  SRR4302537.2454538/1‑94 (MQ=60)

           ATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCG                                                                                    >  SRR4302537.3092128/1‑94 (MQ=60)

           ATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCG                                                                                    <  SRR4302537.4797077/94‑1 (MQ=60)

            TGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCTGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGG                                                                                   >  SRR4302537.3977729/1‑94 (MQ=60)

            TGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGG                                                                                   >  SRR4302537.1022098/1‑94 (MQ=60)

            TGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGG                                                                                   >  SRR4302537.899866/1‑94 (MQ=60)

            TGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGG                                                                                   >  SRR4302537.65388/1‑94 (MQ=60)

              CAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTG                                                                                 <  SRR4302537.5501537/94‑1 (MQ=60)

              CAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTG                                                                                 <  SRR4302537.960487/94‑1 (MQ=60)

                GTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGT                                                                               <  SRR4302537.1633800/94‑1 (MQ=60)

                GTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGT                                                                               >  SRR4302537.1874041/1‑94 (MQ=60)

                 TACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTG                                                                              >  SRR4302537.282252/1‑94 (MQ=60)

                 TACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTG                                                                              <  SRR4302537.4264974/94‑1 (MQ=60)

                 TACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTG                                                                              >  SRR4302537.6449884/1‑94 (MQ=60)

                  ACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGT                                                                             >  SRR4302537.3576461/1‑94 (MQ=60)

                  ACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGT                                                                             >  SRR4302537.5215771/1‑94 (MQ=60)

                   CTTTTGCACCAACAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAACCTGCGCGTGGATCGGTGGTGTA                                                                            <  SRR4302537.2246053/94‑1 (MQ=60)

                   CTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTA                                                                            >  SRR4302537.5960181/1‑94 (MQ=60)

                   CTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTA                                                                            >  SRR4302537.6088916/1‑94 (MQ=60)

                    TTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAG                                                                           >  SRR4302537.5781326/1‑94 (MQ=60)

                     TTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGA                                                                          >  SRR4302537.1959070/1‑94 (MQ=60)

                      TTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGAT                                                                         >  SRR4302537.480631/1‑94 (MQ=60)

                      TTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGAT                                                                         <  SRR4302537.3653961/94‑1 (MQ=60)

                       TGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATG                                                                        <  SRR4302537.2136578/94‑1 (MQ=60)

                        GCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGC                                                                       >  SRR4302537.2411847/1‑94 (MQ=60)

                         CACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCC                                                                      >  SRR4302537.1746385/1‑94 (MQ=60)

                         CACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCC                                                                      >  SRR4302537.5340487/1‑94 (MQ=60)

                           CCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCG                                                                    >  SRR4302537.5559437/1‑94 (MQ=60)

                           CCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCG                                                                    >  SRR4302537.1839261/1‑94 (MQ=60)

                             AAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGG                                                                  >  SRR4302537.1854337/1‑94 (MQ=60)

                             AAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGG                                                                  >  SRR4302537.2305295/1‑94 (MQ=60)

                               AAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGAC                                                                >  SRR4302537.4054783/1‑94 (MQ=60)

                               AAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGAC                                                                >  SRR4302537.1637563/1‑94 (MQ=60)

                               AAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGAC                                                                <  SRR4302537.2330385/94‑1 (MQ=60)

                                AGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACG                                                               >  SRR4302537.3766242/1‑94 (MQ=60)

                                 GTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGT                                                              >  SRR4302537.814115/1‑94 (MQ=60)

                                   TGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCG                                                            >  SRR4302537.3334737/1‑94 (MQ=60)

                                   TGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCG                                                            <  SRR4302537.967321/94‑1 (MQ=60)

                                   TGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCG                                                            >  SRR4302537.3059543/1‑94 (MQ=60)

                                   TGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCG                                                            <  SRR4302537.1701208/94‑1 (MQ=60)

                                   TGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCG                                                            <  SRR4302537.2342417/94‑1 (MQ=60)

                                   TGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCG                                                            >  SRR4302537.1222856/1‑94 (MQ=60)

                                     CCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGT                                                          >  SRR4302537.5877115/1‑94 (MQ=60)

                                     CCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGT                                                          <  SRR4302537.2879484/94‑1 (MQ=60)

                                     CCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGT                                                          <  SRR4302537.1538572/94‑1 (MQ=60)

                                      CATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTC                                                         >  SRR4302537.910246/1‑94 (MQ=60)

                                       ATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCC                                                        >  SRR4302537.787254/1‑94 (MQ=60)

                                       ATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCC                                                        >  SRR4302537.2467784/1‑94 (MQ=60)

                                       ATCTCTGCAGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGCAGGAGATGCCCGGGAGGTCGGTCA                                                        >  SRR4302537.1707823/1‑94 (MQ=60)

                                         CTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAG                                                      >  SRR4302537.1566693/1‑94 (MQ=60)

                                         CTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAG                                                      <  SRR4302537.5874194/94‑1 (MQ=60)

                                         CTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGAGACGTCGGTCCAG                                                      <  SRR4302537.5896550/94‑1 (MQ=60)

                                           CTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGAT                                                    <  SRR4302537.1092730/94‑1 (MQ=60)

                                           CTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGAT                                                    <  SRR4302537.5699184/94‑1 (MQ=60)

                                           CTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGAT                                                    <  SRR4302537.1239956/94‑1 (MQ=60)

                                           CTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGAT                                                    <  SRR4302537.1075207/94‑1 (MQ=60)

                                            TGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATA                                                   >  SRR4302537.3769355/1‑94 (MQ=60)

                                            TGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATA                                                   <  SRR4302537.2510359/94‑1 (MQ=60)

                                            TGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATA                                                   >  SRR4302537.5660603/1‑94 (MQ=60)

                                            TGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATA                                                   >  SRR4302537.4699352/1‑94 (MQ=60)

                                             GCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATAT                                                  <  SRR4302537.3898584/94‑1 (MQ=60)

                                              CCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATC                                                 <  SRR4302537.4459374/94‑1 (MQ=60)

                                              CCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATC                                                 <  SRR4302537.2420525/94‑1 (MQ=60)

                                               CGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGCAGATGCCCGGGACGTCGGTCCAGATATCA                                                <  SRR4302537.4673298/94‑1 (MQ=60)

                                                  TTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACA                                             <  SRR4302537.3530037/94‑1 (MQ=60)

                                                  TTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACA                                             <  SRR4302537.5324639/94‑1 (MQ=60)

                                                   TCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACAC                                            <  SRR4302537.2540866/94‑1 (MQ=60)

                                                   TCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACAC                                            <  SRR4302537.6479544/94‑1 (MQ=60)

                                                    CGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGAGCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACG                                           <  SRR4302537.2616105/94‑1 (MQ=60)

                                                     GGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGA                                          >  SRR4302537.2432482/1‑94 (MQ=60)

                                                     GGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGA                                          >  SRR4302537.2252392/1‑94 (MQ=60)

                                                      GCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAG                                         >  SRR4302537.1275842/1‑94 (MQ=60)

                                                        AAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCATATATCAACACGAGAT                                       >  SRR4302537.2849494/1‑94 (MQ=60)

                                                        AAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGAT                                       <  SRR4302537.4677302/94‑1 (MQ=60)

                                                        AAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGAT                                       >  SRR4302537.946552/1‑94 (MQ=60)

                                                        AAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGAT                                       >  SRR4302537.1628988/1‑94 (MQ=60)

                                                        AAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGAT                                       <  SRR4302537.885688/94‑1 (MQ=60)

                                                         AACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATG                                      >  SRR4302537.3362163/1‑94 (MQ=60)

                                                          ACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGC                                     <  SRR4302537.1917802/94‑1 (MQ=60)

                                                             CGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTG                                  >  SRR4302537.4145717/1‑94 (MQ=60)

                                                             CGATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTG                                  >  SRR4302537.3744558/1‑94 (MQ=60)

                                                              GATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGT                                 >  SRR4302537.6277677/1‑94 (MQ=60)

                                                               ATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTA                                <  SRR4302537.3067168/94‑1 (MQ=60)

                                                               ATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTA                                >  SRR4302537.2062165/1‑94 (MQ=60)

                                                               ATTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTA                                >  SRR4302537.5246366/1‑94 (MQ=60)

                                                                TTTCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAA                               <  SRR4302537.1295611/94‑1 (MQ=60)

                                                                  TCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAG                             <  SRR4302537.3406565/94‑1 (MQ=60)

                                                                  TCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAG                             <  SRR4302537.948065/94‑1 (MQ=60)

                                                                  TCATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAG                             <  SRR4302537.4172251/94‑1 (MQ=60)

                                                                    ATCAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCC                           <  SRR4302537.234581/94‑1 (MQ=60)

                                                                      CAATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTC                         >  SRR4302537.6348113/1‑94 (MQ=60)

                                                                        ATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCG                       >  SRR4302537.1086361/1‑94 (MQ=60)

                                                                        ATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCG                       <  SRR4302537.6040451/94‑1 (MQ=60)

                                                                        ATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCG                       <  SRR4302537.2458293/94‑1 (MQ=60)

                                                                        ATGCGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCG                       >  SRR4302537.5496136/1‑94 (MQ=60)

                                                                           CGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCA                    >  SRR4302537.679468/1‑94 (MQ=60)

                                                                           CGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCA                    >  SRR4302537.5799239/1‑94 (MQ=60)

                                                                           CGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCA                    >  SRR4302537.3622196/1‑94 (MQ=60)

                                                                           CGTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCA                    <  SRR4302537.5387287/94‑1 (MQ=60)

                                                                            GTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAG                   >  SRR4302537.1043230/1‑94 (MQ=60)

                                                                            GTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAG                   <  SRR4302537.408801/94‑1 (MQ=60)

                                                                            GTTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAG                   >  SRR4302537.5295812/1‑94 (MQ=60)

                                                                             TTTTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGC                  <  SRR4302537.6109246/94‑1 (MQ=60)

                                                                               TTGCTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAA                >  SRR4302537.1304381/1‑94 (MQ=60)

                                                                                  CTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGC             >  SRR4302537.605100/1‑94 (MQ=60)

                                                                                  CTGCGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGC             >  SRR4302537.3740034/1‑94 (MQ=60)

                                                                                     CGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGC          >  SRR4302537.1145331/1‑94 (MQ=60)

                                                                                     CGGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGC          <  SRR4302537.4398957/94‑1 (MQ=60)

                                                                                      GGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCG         >  SRR4302537.2196488/1‑94 (MQ=60)

                                                                                      GGAAACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCC         >  SRR4302537.4166367/1‑94 (MQ=60)

                                                                                          ACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTAT     <  SRR4302537.4144571/94‑1 (MQ=60)

                                                                                          ACTGCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTAT     >  SRR4302537.1819893/1‑94 (MQ=60)

                                                                                             GCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTATAAT  <  SRR4302537.5639339/94‑1 (MQ=60)

                                                                                             GCGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTATAAT  >  SRR4302537.5501965/1‑94 (MQ=60)

AACGTTGCCGGATGCAGTACTTTTGCACCAAAAGTTGCCATCTCTGCCGCTTCGGCAAACGCGATTTCATCAATGCGTTTTGCTGCGGAAACTACGCGTGGATCGGTGGTGTAGATGCCCGGGACGTCGGTCCAGATATCAACACGAGATGCGTGTAAAGCCTCCGCCAGCAAGGCTGCCGTATAAT  >  NC_000913/4230022‑4230208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`