Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,280,469	T→C	I62M (ATA→ATG)	yjcF ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,280,469	0	T	C	100.0%	858.7 / NA	240	I62M (ATA→ATG)	yjcF	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (154/86); total (154/86)

Only 100 of 243 total aligned reads displayed.

AAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCTATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGA  >  NC_000913/4280380‑4280558

 aaTATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCa                                                                                       <  1:2497382/93‑1 (MQ=255)

    atTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACtt                                                                                    >  2:4010090/1‑93 (MQ=255)

     tttATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACttt                                                                                   <  1:3458118/93‑1 (MQ=255)

     tttATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACttt                                                                                   >  1:3358068/1‑93 (MQ=255)

     tttATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACttt                                                                                   >  2:3911016/1‑93 (MQ=255)

      ttATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACtttt                                                                                  >  2:1608498/1‑93 (MQ=255)

       tATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACttttt                                                                                 >  1:3662234/1‑93 (MQ=255)

       tATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACttttt                                                                                 >  1:5925411/1‑93 (MQ=255)

         tGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCa                                                                               <  1:3421604/93‑1 (MQ=255)

          gTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCAt                                                                              <  1:2428821/93‑1 (MQ=255)

          gTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCAt                                                                              >  2:2634772/1‑93 (MQ=255)

          gTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCAt                                                                              <  1:2272365/93‑1 (MQ=255)

           tATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATg                                                                             >  2:3495156/1‑93 (MQ=255)

           tATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATg                                                                             <  1:1919178/93‑1 (MQ=255)

            tttttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGa                                                                            <  2:5368955/92‑1 (MQ=255)

            aTTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGa                                                                            >  2:1135386/1‑93 (MQ=255)

             ttttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGat                                                                           >  2:4961388/1‑93 (MQ=255)

             ttttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGat                                                                           >  2:622626/1‑93 (MQ=255)

             ttttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGat                                                                           <  2:892867/93‑1 (MQ=255)

             ttttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTGTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGat                                                                           <  1:2666022/93‑1 (MQ=255)

              tttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGatc                                                                          <  1:583386/93‑1 (MQ=255)

              tttCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGatc                                                                          >  1:5290922/1‑93 (MQ=255)

              tttCCTGTCCGTTTCTTTCGGGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGatc                                                                          >  2:3291533/1‑93 (MQ=255)

                tCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGatcat                                                                        >  1:5930920/1‑93 (MQ=255)

                tCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGatcat                                                                        >  1:4312719/1‑93 (MQ=255)

                  cTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATcc                                                                      <  1:3160763/93‑1 (MQ=255)

                    gTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGACCATCACTTTTTCATGATCATCCAt                                                                    >  2:5983628/1‑93 (MQ=255)

                     tCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCAtt                                                                   >  1:6463593/1‑93 (MQ=255)

                     tCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCAtt                                                                   >  1:2063039/1‑93 (MQ=255)

                      ccGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCAttt                                                                  <  1:654402/93‑1 (MQ=255)

                        gTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTg                                                                >  1:3940262/1‑93 (MQ=255)

                         tttctttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGa                                                               >  1:4541680/1‑93 (MQ=255)

                         tttctttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGa                                                               >  1:5012469/1‑93 (MQ=255)

                          ttctttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGaa                                                              >  1:295667/1‑93 (MQ=255)

                           tctttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGaaa                                                             >  2:2235277/1‑93 (MQ=255)

                            ctttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGaaaa                                                            <  1:171991/93‑1 (MQ=255)

                             tttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAag                                                           <  2:64831/93‑1 (MQ=255)

                             tttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAag                                                           >  1:2349425/1‑93 (MQ=255)

                             tttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAag                                                           >  1:3568118/1‑93 (MQ=255)

                             tttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAag                                                           <  1:4070747/93‑1 (MQ=255)

                              ttcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAaga                                                          >  1:5219130/1‑93 (MQ=255)

                               tcGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAagag                                                         >  2:3060080/1‑93 (MQ=255)

                                 gTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAagagag                                                       >  2:5620657/1‑93 (MQ=255)

                                    aTTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAgg                                                    <  2:4136919/93‑1 (MQ=255)

                                    aTTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAgg                                                    >  2:5962552/1‑93 (MQ=255)

                                      ttttCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGc                                                  >  2:1791770/1‑93 (MQ=255)

                                          ccTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTa                                              <  1:4783660/93‑1 (MQ=255)

                                             gATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTg                                           <  2:4102437/93‑1 (MQ=255)

                                             gATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTg                                           >  2:4346469/1‑93 (MQ=255)

                                              aTGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGt                                          <  2:4863932/93‑1 (MQ=255)

                                              aTGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGt                                          >  1:6106010/1‑93 (MQ=255)

                                               tGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTc                                         >  2:1800826/1‑93 (MQ=255)

                                               tGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTc                                         <  2:4194623/93‑1 (MQ=255)

                                                 gTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCaa                                       >  1:5459593/1‑93 (MQ=255)

                                                  tAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAAt                                      >  2:1347281/1‑93 (MQ=255)

                                                    aaCTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTa                                    >  2:1275924/1‑93 (MQ=255)

                                                        aTCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgt                                >  2:1051458/1‑93 (MQ=255)

                                                        aTCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgt                                >  1:1297607/1‑93 (MQ=255)

                                                         tCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgtg                               <  2:4569466/93‑1 (MQ=255)

                                                          cATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgtgt                              >  2:2772990/1‑93 (MQ=255)

                                                          cATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgtgt                              <  2:4793655/93‑1 (MQ=255)

                                                          cATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgtgt                              <  2:5073303/93‑1 (MQ=255)

                                                          cATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgtgt                              >  1:448195/1‑93 (MQ=255)

                                                          cATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACgtgt                              <  2:5922919/93‑1 (MQ=255)

                                                           aTAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGtt                             >  2:2724493/1‑93 (MQ=255)

                                                           aTAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGtt                             >  1:4740231/1‑93 (MQ=255)

                                                            tgaaTTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGACGGCTTTATTGTCAATTAACGTGttt                            >  1:6249809/3‑93 (MQ=255)

                                                             aaaTTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGtttt                           <  1:2777944/93‑1 (MQ=255)

                                                              aaTTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGttttt                          >  2:5816570/1‑93 (MQ=255)

                                                               aTTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTa                         <  1:3745559/93‑1 (MQ=255)

                                                                ttCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTat                        <  1:3240998/93‑1 (MQ=255)

                                                                 tCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTatg                       <  1:1799729/93‑1 (MQ=255)

                                                                  cTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTatga                      <  2:1507192/93‑1 (MQ=255)

                                                                   ttttCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTatgat                     >  2:4445270/1‑93 (MQ=255)

                                                                   ttttCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTatgat                     >  1:4945092/1‑93 (MQ=255)

                                                                   ttttCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTatgat                     <  1:370678/93‑1 (MQ=255)

                                                                    tttCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTatgatg                    >  1:157226/1‑93 (MQ=255)

                                                                     ttCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGt                   >  2:4286712/1‑93 (MQ=255)

                                                                      tCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGtt                  <  1:5590136/93‑1 (MQ=255)

                                                                      tCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGtt                  >  1:6189875/1‑93 (MQ=255)

                                                                       cATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGttt                 >  1:209282/1‑93 (MQ=255)

                                                                       cATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGttt                 <  2:5196344/93‑1 (MQ=255)

                                                                       cATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGttt                 >  1:6310963/1‑93 (MQ=255)

                                                                       cATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGttt                 <  2:2663707/93‑1 (MQ=255)

                                                                        aTTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTg                >  2:5178773/1‑93 (MQ=255)

                                                                        aTTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTg                >  2:2377379/1‑93 (MQ=255)

                                                                         ttttCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTgt               >  2:1619276/1‑92 (MQ=255)

                                                                          tttCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCt              >  2:366966/1‑93 (MQ=255)

                                                                            tCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGt            >  1:1157965/1‑93 (MQ=255)

                                                                            tCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGt            <  2:1963434/93‑1 (MQ=255)

                                                                              tGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTaa          <  2:3598732/93‑1 (MQ=255)

                                                                              tGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTaa          >  1:4217038/1‑93 (MQ=255)

                                                                                 aTCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTa       <  1:2710365/93‑1 (MQ=255)

                                                                                 aTCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTa       >  1:6017594/1‑93 (MQ=255)

                                                                                  tCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTAt      <  2:3694778/93‑1 (MQ=255)

                                                                                  tCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTAt      >  1:4868674/1‑93 (MQ=255)

                                                                                   cAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATc     <  2:5643585/93‑1 (MQ=255)

                                                                                   cAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATc     <  1:4240214/93‑1 (MQ=255)

                                                                                      gCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGa  >  2:1921081/1‑93 (MQ=255)

                                                                                      gCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGa  >  1:1050021/1‑93 (MQ=255)

AAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCTATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGA  >  NC_000913/4280380‑4280558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TATAAAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCTATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATTT  >  NC_000913/4280376‑4280561

TATAAAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCC                                                                                              <  SRR4302537.3553140/94‑1 (MQ=60)

TATAAAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCC                                                                                              <  SRR4302537.281421/94‑1 (MQ=60)

TATAAAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCC                                                                                              >  SRR4302537.5735571/1‑94 (MQ=60)

TATAAAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCA                                                                                              >  SRR4302537.5147074/1‑94 (MQ=60)

    AAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCA                                                                                          >  SRR4302537.3723854/1‑94 (MQ=60)

     AATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCAC                                                                                         <  SRR4302537.2514959/94‑1 (MQ=60)

       TATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTT                                                                                       >  SRR4302537.5040217/1‑94 (MQ=60)

        ATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTT                                                                                      >  SRR4302537.3381855/1‑94 (MQ=60)

         TTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTT                                                                                     <  SRR4302537.621417/94‑1 (MQ=60)

         TTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTT                                                                                     <  SRR4302537.3482568/94‑1 (MQ=60)

         TTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTGCTGAATCAAGCCCATCACTTTT                                                                                     >  SRR4302537.6316641/1‑94 (MQ=60)

          TTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTT                                                                                    >  SRR4302537.5269998/1‑94 (MQ=60)

          TTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTT                                                                                    >  SRR4302537.3688009/1‑94 (MQ=60)

          TTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTT                                                                                    >  SRR4302537.4131605/1‑94 (MQ=60)

          TTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTT                                                                                    >  SRR4302537.5966075/1‑94 (MQ=60)

          TTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTT                                                                                    <  SRR4302537.4535801/94‑1 (MQ=60)

            ATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCA                                                                                  >  SRR4302537.3099994/1‑94 (MQ=60)

            ATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCA                                                                                  <  SRR4302537.6108687/94‑1 (MQ=60)

             TGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCAT                                                                                 <  SRR4302537.3445821/94‑1 (MQ=60)

             TGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCAT                                                                                 >  SRR4302537.4257549/1‑94 (MQ=60)

             TGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCAT                                                                                 >  SRR4302537.4443549/1‑94 (MQ=60)

              GTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATG                                                                                <  SRR4302537.2288413/94‑1 (MQ=60)

              GTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATG                                                                                <  SRR4302537.2445933/94‑1 (MQ=60)

               TATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGA                                                                               <  SRR4302537.1932503/94‑1 (MQ=60)

                ATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGAT                                                                              <  SRR4302537.2091725/94‑1 (MQ=60)

                 TTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATC                                                                             >  SRR4302537.3576326/1‑94 (MQ=60)

                 TTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATC                                                                             >  SRR4302537.5327279/1‑94 (MQ=60)

                 TTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTGTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATC                                                                             <  SRR4302537.2684646/94‑1 (MQ=60)

                  TTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCA                                                                            >  SRR4302537.5526863/1‑94 (MQ=60)

                  TTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCA                                                                            <  SRR4302537.587374/94‑1 (MQ=60)

                   TTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCAT                                                                           >  SRR4302537.5971611/1‑94 (MQ=60)

                   TTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCAT                                                                           >  SRR4302537.4342695/1‑94 (MQ=60)

                     CCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCC                                                                         >  SRR4302537.725293/1‑94 (MQ=60)

                     CCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCC                                                                         <  SRR4302537.2368269/94‑1 (MQ=60)

                     CCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCC                                                                         >  SRR4302537.6252296/1‑94 (MQ=60)

                      CTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTacggaatagatcggaa                                                                        >  SRR4302537.1952349/1‑78 (MQ=60)

                      CTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCA                                                                        <  SRR4302537.3182952/94‑1 (MQ=60)

                      CTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCA                                                                        >  SRR4302537.3344855/1‑94 (MQ=60)

                       TGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCAT                                                                       >  SRR4302537.3956787/1‑94 (MQ=60)

                        GTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATT                                                                      >  SRR4302537.6507380/1‑94 (MQ=60)

                        GTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATT                                                                      >  SRR4302537.2077527/1‑94 (MQ=60)

                        GTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATT                                                                      >  SRR4302537.3104758/1‑94 (MQ=60)

                         TCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTT                                                                     <  SRR4302537.3221369/94‑1 (MQ=60)

                         TCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTT                                                                     <  SRR4302537.6037549/94‑1 (MQ=60)

                          CCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTT                                                                    >  SRR4302537.4895907/1‑94 (MQ=60)

                          CCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTT                                                                    >  SRR4302537.438024/1‑94 (MQ=60)

                          CCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTT                                                                    <  SRR4302537.658858/94‑1 (MQ=60)

                           CGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTG                                                                   >  SRR4302537.3967808/1‑94 (MQ=60)

                            GTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGA                                                                  >  SRR4302537.4573117/1‑94 (MQ=60)

                            GTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGA                                                                  >  SRR4302537.5047000/1‑94 (MQ=60)

                            GTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGA                                                                  <  SRR4302537.1935400/94‑1 (MQ=60)

                             TTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAA                                                                 >  SRR4302537.297729/1‑94 (MQ=60)

                               TCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAA                                                               <  SRR4302537.3308329/94‑1 (MQ=60)

                               TCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAA                                                               >  SRR4302537.5096618/1‑94 (MQ=60)

                                CTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAG                                                              >  SRR4302537.3438297/1‑94 (MQ=60)

                                CTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAG                                                              <  SRR4302537.173213/94‑1 (MQ=60)

                                CTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAG                                                              >  SRR4302537.3593279/1‑94 (MQ=60)

                                CTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAG                                                              >  SRR4302537.2365969/1‑94 (MQ=60)

                                 TTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGA                                                             <  SRR4302537.4099177/94‑1 (MQ=60)

                                 TTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGA                                                             >  SRR4302537.5255026/1‑94 (MQ=60)

                                   TCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGA                                                           <  SRR4302537.3728490/94‑1 (MQ=60)

                                   TCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGA                                                           <  SRR4302537.4792680/94‑1 (MQ=60)

                                   TCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGA                                                           <  SRR4302537.462187/94‑1 (MQ=60)

                                    CGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAG                                                          <  SRR4302537.5666519/94‑1 (MQ=60)

                                     GTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGA                                                         <  SRR4302537.5334251/94‑1 (MQ=60)

                                     GTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGA                                                         >  SRR4302537.5945294/1‑94 (MQ=60)

                                        ATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGG                                                      >  SRR4302537.1102421/1‑94 (MQ=60)

                                        ATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGG                                                      >  SRR4302537.2901296/1‑94 (MQ=60)

                                         TTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGC                                                     >  SRR4302537.652760/1‑94 (MQ=60)

                                         TTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGC                                                     <  SRR4302537.2715329/94‑1 (MQ=60)

                                          TTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCT                                                    >  SRR4302537.4331079/1‑94 (MQ=60)

                                           TTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTT                                                   >  SRR4302537.4095504/1‑94 (MQ=60)

                                              CCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTAT                                                <  SRR4302537.4816679/94‑1 (MQ=60)

                                              CCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTAT                                                >  SRR4302537.2695945/1‑94 (MQ=60)

                                                TGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTG                                              >  SRR4302537.2293916/1‑94 (MQ=60)

                                                TGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTG                                              <  SRR4302537.5968036/94‑1 (MQ=60)

                                                TGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTG                                              <  SRR4302537.5747357/94‑1 (MQ=60)

                                                 GATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGT                                             >  SRR4302537.6147962/1‑94 (MQ=60)

                                                  ATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTC                                            >  SRR4302537.1275038/1‑94 (MQ=60)

                                                   TGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCA                                           >  SRR4302537.1766127/1‑94 (MQ=60)

                                                   TGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCA                                           >  SRR4302537.1781879/1‑94 (MQ=60)

                                                    GGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAA                                          >  SRR4302537.5496836/1‑94 (MQ=60)

                                                      TAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATT                                        >  SRR4302537.5101011/1‑94 (MQ=60)

                                                        AACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAA                                      <  SRR4302537.4856221/94‑1 (MQ=60)

                                                         ACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAAC                                     <  SRR4302537.6160488/94‑1 (MQ=60)

                                                         ACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAAC                                     >  SRR4302537.1677563/1‑94 (MQ=60)

                                                           TATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGT                                   >  SRR4302537.1306628/1‑94 (MQ=60)

                                                            ATCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTG                                  >  SRR4302537.3885407/1‑94 (MQ=60)

                                                             TCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGT                                 >  SRR4302537.451303/1‑94 (MQ=60)

                                                             TCATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGT                                 >  SRR4302537.2355318/1‑94 (MQ=60)

                                                              CATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTT                                >  SRR4302537.4772995/1‑94 (MQ=60)

                                                              CATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTT                                >  SRR4302537.6299065/1‑94 (MQ=60)

                                                              CATAAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTT                                >  SRR4302537.1574410/1‑94 (MQ=60)

                                                               ATGAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGACGGCTTTATTGTCAATTAACGTGTTT                               >  SRR4302537.6292743/1‑94 (MQ=60)

                                                                 AAATTCTTTTCATTTTCTGCATCAAGCCCATCGCTTTTTCCTGATCATCCATTTTGAAAAGTGAGCGGGCTTTATTGTCAGTTAACGTGcttct                             >  SRR4302537.5909883/1‑89 (MQ=60)

                                                                 AAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTT                             <  SRR4302537.2128537/94‑1 (MQ=60)

                                                                 AAATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTT                             <  SRR4302537.2797368/94‑1 (MQ=60)

                                                                   ATTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTAT                           <  SRR4302537.3771862/94‑1 (MQ=60)

                                                                    TTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATG                          <  SRR4302537.872365/94‑1 (MQ=60)

                                                                    TTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATG                          <  SRR4302537.3263841/94‑1 (MQ=60)

                                                                    TTCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATG                          >  SRR4302537.1548307/1‑94 (MQ=60)

                                                                     TCTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGA                         <  SRR4302537.1812289/94‑1 (MQ=60)

                                                                      CTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGAT                        >  SRR4302537.4979192/1‑94 (MQ=60)

                                                                      CTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGAT                        >  SRR4302537.2501703/1‑94 (MQ=60)

                                                                      CTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGAT                        >  SRR4302537.4604190/1‑94 (MQ=60)

                                                                      CTTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTATATTGTCAATTAACGTGTTTTTATGAT                        >  SRR4302537.6479631/1‑94 (MQ=60)

                                                                       TTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATG                       <  SRR4302537.373250/94‑1 (MQ=60)

                                                                       TTTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATG                       >  SRR4302537.158345/1‑94 (MQ=60)

                                                                        TTTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGT                      <  SRR4302537.346014/94‑1 (MQ=60)

                                                                         TTCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTT                     >  SRR4302537.6232519/1‑94 (MQ=60)

                                                                          TCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTT                    <  SRR4302537.5628354/94‑1 (MQ=60)

                                                                          TCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTT                    >  SRR4302537.210786/1‑94 (MQ=60)

                                                                          TCATTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTT                    >  SRR4302537.6354168/1‑94 (MQ=60)

                                                                             TTTTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCT                 >  SRR4302537.3767309/1‑94 (MQ=60)

                                                                               TTCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGT               >  SRR4302537.1166022/1‑94 (MQ=60)

                                                                                TCTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTA              <  SRR4302537.2780501/94‑1 (MQ=60)

                                                                                 CTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAA             >  SRR4302537.5402555/1‑94 (MQ=60)

                                                                                 CTGAATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAA             >  SRR4302537.4246433/1‑94 (MQ=60)

                                                                                    AATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTA          >  SRR4302537.6015122/1‑94 (MQ=60)

                                                                                    AATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTA          >  SRR4302537.6058934/1‑94 (MQ=60)

                                                                                    AATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTA          >  SRR4302537.4168229/1‑94 (MQ=60)

                                                                                     ATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTAT         >  SRR4302537.4902269/1‑94 (MQ=60)

                                                                                     ATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTAT         <  SRR4302537.2729294/94‑1 (MQ=60)

                                                                                     ATCAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTAT         >  SRR4302537.1832837/1‑94 (MQ=60)

                                                                                       CAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCT       >  SRR4302537.345380/1‑94 (MQ=60)

                                                                                       CAAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCT       <  SRR4302537.4269696/94‑1 (MQ=60)

                                                                                        AAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTG      >  SRR4302537.4916261/1‑94 (MQ=60)

                                                                                        AAGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTG      >  SRR4302537.2646845/1‑94 (MQ=60)

                                                                                         AGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGA     <  SRR4302537.3658134/94‑1 (MQ=60)

                                                                                         AGCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGA     >  SRR4302537.1057261/1‑94 (MQ=60)

                                                                                          GCCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGAT    <  SRR4302537.2496283/94‑1 (MQ=60)

                                                                                           CCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGCTT   >  SRR4302537.4069319/1‑94 (MQ=60)

                                                                                           CCCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATT   >  SRR4302537.3552452/1‑94 (MQ=60)

                                                                                            CCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATTT  <  SRR4302537.2618627/94‑1 (MQ=60)

                                                                                            CCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATTT  >  SRR4302537.6326293/1‑94 (MQ=60)

                                                                                            CCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATTT  >  SRR4302537.6175447/1‑94 (MQ=60)

                                                                                            CCATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATTT  <  SRR4302537.5705660/94‑1 (MQ=60)

TATAAAATATTTATGTATTTTCCTGTCCGTTTCTTTCGTGATTTTTCCTGATGGTAAACTATCATAAATTCTTTTCATTTTCTGAATCAAGCCTATCACTTTTTCATGATCATCCATTTTGAAAAGAGAGAGGGCTTTATTGTCAATTAACGTGTTTTTATGATGTTTGCTGTAATTATCTGATTT  >  NC_000913/4280376‑4280561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`