Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	882	254.4	12957588	98.0%	12698436	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,337,864	A→G	L80P (CTT→CCT)	adiA ←	biodegradative arginine decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,337,864	0	A	G	100.0%	868.0 / NA	244	L80P (CTT→CCT)	adiA	biodegradative arginine decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (121/123); total (121/123)

Only 100 of 254 total aligned reads displayed.

ACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAA  >  NC_000913/4337774‑4337953

aCAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGc                                                                                         >  1:2936458/1‑93 (MQ=255)

aCAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGc                                                                                         >  2:578068/1‑93 (MQ=255)

  aaGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCtt                                                                                       >  2:2977717/1‑93 (MQ=255)

   aGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTa                                                                                      >  1:6058037/1‑93 (MQ=255)

    gCTCCAGCAGTTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTAc                                                                                     <  1:498748/93‑1 (MQ=255)

    gCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTAc                                                                                     >  2:3745154/1‑93 (MQ=255)

      tgcagcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCg                                                                                   >  2:5138549/3‑93 (MQ=255)

       ccAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGa                                                                                  >  2:1369331/1‑93 (MQ=255)

        cagcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGAt                                                                                 <  2:5177917/93‑1 (MQ=255)

        cagcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGAt                                                                                 >  2:1819737/1‑93 (MQ=255)

        cagcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGAt                                                                                 <  2:4717340/93‑1 (MQ=255)

         agcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATc                                                                                <  2:5491206/93‑1 (MQ=255)

         agcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATc                                                                                <  2:2760155/93‑1 (MQ=255)

          gcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCa                                                                               >  1:4615274/1‑93 (MQ=255)

          gcagGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCa                                                                               >  2:161315/1‑93 (MQ=255)

            agGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAt                                                                             >  1:157797/1‑93 (MQ=255)

            agGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAt                                                                             >  1:516867/1‑93 (MQ=255)

            agGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAt                                                                             <  2:5908941/93‑1 (MQ=255)

             ggTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAtt                                                                            <  1:273229/93‑1 (MQ=255)

              gTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTg                                                                           <  2:4488017/93‑1 (MQ=255)

               tCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGt                                                                          <  2:117538/93‑1 (MQ=255)

                 gcgATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCt                                                                        >  1:5775617/1‑93 (MQ=255)

                   gATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGa                                                                      >  2:6413254/1‑93 (MQ=255)

                   gATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGa                                                                      >  1:699212/1‑93 (MQ=255)

                    aTCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGCTCAATTGTCTGAc                                                                     >  1:4820877/1‑93 (MQ=255)

                    aTCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGAc                                                                     >  1:6367866/1‑93 (MQ=255)

                      ccATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGt                                                                   >  2:1514304/1‑93 (MQ=255)

                      ccATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGt                                                                   >  1:2413681/1‑93 (MQ=255)

                      ccATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGt                                                                   <  1:1909186/93‑1 (MQ=255)

                         ttGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGtttt                                                                <  2:1721033/93‑1 (MQ=255)

                          tGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGCCCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTg                                                               <  1:3416853/93‑1 (MQ=255)

                          tGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTg                                                               <  1:2247459/93‑1 (MQ=255)

                           gcggcgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGa                                                              <  2:2322000/93‑1 (MQ=255)

                             ggcgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATg                                                            >  1:1966627/1‑93 (MQ=255)

                             ggcgAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATg                                                            <  2:1410891/93‑1 (MQ=255)

                                gAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTc                                                         <  1:734658/93‑1 (MQ=255)

                                gAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTc                                                         <  2:107082/93‑1 (MQ=255)

                                gAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTc                                                         >  1:103838/1‑93 (MQ=255)

                                gAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTc                                                         >  1:3120135/1‑93 (MQ=255)

                                  gggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGt                                                       >  2:5411246/1‑93 (MQ=255)

                                  gggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGt                                                       >  1:3078488/1‑93 (MQ=255)

                                   ggCTTTTTCCCGATCGCCCGACAGGAAGACCGGCACGTTTTATTGGCGCTCATGACGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTc                                                      >  2:959879/1‑93 (MQ=255)

                                   ggCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTc                                                      >  1:1195376/1‑93 (MQ=255)

                                    gCTTTTTCCCGGTCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTcc                                                     >  2:3627950/1‑93 (MQ=255)

                                    gCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTcc                                                     >  1:6229319/1‑93 (MQ=255)

                                      tttttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCgg                                                   >  2:2254236/1‑93 (MQ=255)

                                      tttttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCgg                                                   >  2:4839927/1‑93 (MQ=255)

                                       ttttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGa                                                  <  2:3159080/93‑1 (MQ=255)

                                       ttttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGa                                                  >  1:2222076/1‑93 (MQ=255)

                                        tttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGAt                                                 <  1:5632154/93‑1 (MQ=255)

                                        tttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGAt                                                 <  2:1828552/93‑1 (MQ=255)

                                         ttCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATg                                                <  2:4046440/93‑1 (MQ=255)

                                            ccGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTc                                             <  1:935077/93‑1 (MQ=255)

                                            ccGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTc                                             <  1:1074112/93‑1 (MQ=255)

                                              gATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCa                                           >  1:768918/1‑93 (MQ=255)

                                              gATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCa                                           >  2:6005084/1‑93 (MQ=255)

                                              gATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCa                                           >  1:5259159/1‑93 (MQ=255)

                                               aTCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCAt                                          >  1:2503964/1‑93 (MQ=255)

                                                tCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCAtt                                         >  1:3337521/1‑93 (MQ=255)

                                                   cccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGa                                      >  1:1428448/1‑93 (MQ=255)

                                                    ccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGAt                                     >  1:3489918/1‑93 (MQ=255)

                                                    ccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGAt                                     >  2:2877228/1‑93 (MQ=255)

                                                    ccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGAt                                     >  2:4909873/1‑93 (MQ=255)

                                                    ccAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGAt                                     <  1:1104040/93‑1 (MQ=255)

                                                     cAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATa                                    >  1:5195653/1‑93 (MQ=255)

                                                     cAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATa                                    <  1:2072791/93‑1 (MQ=255)

                                                       aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGc                                  >  2:6283707/1‑93 (MQ=255)

                                                       aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGc                                  <  1:6027912/93‑1 (MQ=255)

                                                       aCAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGc                                  >  2:1214896/1‑93 (MQ=255)

                                                          ggAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGa                               >  2:810726/1‑93 (MQ=255)

                                                           gAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGaa                              >  2:3203456/1‑93 (MQ=255)

                                                           gAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGaa                              <  1:3592828/93‑1 (MQ=255)

                                                                ccGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCa                         <  1:5324272/93‑1 (MQ=255)

                                                                ccGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCa                         >  2:4637929/1‑93 (MQ=255)

                                                                 cGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAg                        >  2:2856100/1‑93 (MQ=255)

                                                                 cGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAg                        <  1:4394116/93‑1 (MQ=255)

                                                                 cGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAg                        >  2:4775852/1‑93 (MQ=255)

                                                                  ggCCCGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAgg                       <  1:3959714/93‑1 (MQ=255)

                                                                  ggCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAgg                       >  1:4860647/1‑93 (MQ=255)

                                                                    cACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCa                     <  1:1876894/93‑1 (MQ=255)

                                                                    cACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCa                     <  2:5247467/93‑1 (MQ=255)

                                                                    cACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCa                     <  2:425043/93‑1 (MQ=255)

                                                                     aCGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAg                    >  2:4561236/1‑93 (MQ=255)

                                                                       gTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGta                  >  2:1713946/1‑92 (MQ=255)

                                                                       gTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTc                  <  1:2617714/93‑1 (MQ=255)

                                                                       gTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTc                  <  2:5657351/93‑1 (MQ=255)

                                                                          ttgttgGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAAt               >  2:2633342/1‑93 (MQ=255)

                                                                           tgttgGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATg              <  1:4320257/93‑1 (MQ=255)

                                                                            gttgGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATgg             <  2:460180/93‑1 (MQ=255)

                                                                             ttgGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGc            <  2:5852316/93‑1 (MQ=255)

                                                                             ttgGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGc            >  2:2624068/1‑93 (MQ=255)

                                                                             ttgGCGCTCATGAGGCTTACCAATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGc            <  1:11591/93‑1 (MQ=255)

                                                                               ggCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCtt          <  1:4678867/93‑1 (MQ=255)

                                                                                  gcTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGt       <  1:3286391/93‑1 (MQ=255)

                                                                                   cTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGtt      <  2:3450309/93‑1 (MQ=255)

                                                                                   cTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGtt      >  1:3666694/1‑93 (MQ=255)

                                                                                   cTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGtt      >  1:3880547/1‑93 (MQ=255)

                                                                                      aTGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGa   <  1:1815501/93‑1 (MQ=255)

                                                                                      aTGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGa   >  1:1734071/1‑93 (MQ=255)

                                                                                       tGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGaa  >  2:208690/1‑93 (MQ=255)

ACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAA  >  NC_000913/4337774‑4337953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGA  >  NC_000913/4337771‑4337957

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAG                                                                                               <  SRR4302537.1120038/94‑1 (MQ=60)

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAG                                                                                               <  SRR4302537.3767563/94‑1 (MQ=60)

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAG                                                                                               <  SRR4302537.5055769/94‑1 (MQ=60)

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAG                                                                                               <  SRR4302537.5123631/94‑1 (MQ=60)

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAG                                                                                               <  SRR4302537.5123632/94‑1 (MQ=60)

 CGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCCTGAGG                                                                                              >  SRR4302537.3366768/1‑94 (MQ=60)

 CGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGG                                                                                              <  SRR4302537.6330333/94‑1 (MQ=60)

 CGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGG                                                                                              <  SRR4302537.223950/94‑1 (MQ=60)

  GACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGC                                                                                             >  SRR4302537.2957079/1‑94 (MQ=60)

   ACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCT                                                                                            <  SRR4302537.2742512/94‑1 (MQ=60)

    CAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTT                                                                                           >  SRR4302537.4686497/1‑94 (MQ=60)

    CAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTT                                                                                           <  SRR4302537.60964/94‑1 (MQ=60)

    CAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTT                                                                                           <  SRR4302537.1894267/94‑1 (MQ=60)

    CAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTT                                                                                           <  SRR4302537.5216248/94‑1 (MQ=60)

     AAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGTCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTA                                                                                          <  SRR4302537.3825036/94‑1 (MQ=60)

     AAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTA                                                                                          >  SRR4302537.6099653/1‑94 (MQ=60)

      AGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTAC                                                                                         >  SRR4302537.1101081/1‑94 (MQ=60)

      AGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTAC                                                                                         >  SRR4302537.3285781/1‑94 (MQ=60)

       GCTCCAGCAGTTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACC                                                                                        <  SRR4302537.502175/94‑1 (MQ=60)

       GCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACC                                                                                        <  SRR4302537.5507393/94‑1 (MQ=60)

         TCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGA                                                                                      >  SRR4302537.5214003/1‑94 (MQ=60)

            AGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCA                                                                                   >  SRR4302537.4647237/1‑94 (MQ=60)

            AGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCA                                                                                   >  SRR4302537.508543/1‑94 (MQ=60)

              CAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAT                                                                                 >  SRR4302537.158918/1‑94 (MQ=60)

              CAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAT                                                                                 >  SRR4302537.520422/1‑94 (MQ=60)

              CAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAAT                                                                                 <  SRR4302537.4146247/94‑1 (MQ=60)

              CAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATAAAT                                                                                 >  SRR4302537.2499403/1‑94 (MQ=60)

               AGGTCGCGATCCATTGCGGCGANGGCTTTTTCCCGATCGCCCAACAGGAAGACCNGCACGTTTNGTTGGCGNTCATGAGGCTTACNGNTNANTT                                                                                >  SRR4302537.2220182/1‑94 (MQ=60)

                GGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTG                                                                               >  SRR4302537.1762783/1‑94 (MQ=60)

                GGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTG                                                                               <  SRR4302537.275152/94‑1 (MQ=60)

                   CGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCT                                                                            >  SRR4302537.5815206/1‑94 (MQ=60)

                    GCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTT                                                                           <  SRR4302537.792396/94‑1 (MQ=60)

                    GCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTG                                                                           <  SRR4302537.5792010/94‑1 (MQ=60)

                    GCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTG                                                                           >  SRR4302537.4431504/1‑94 (MQ=60)

                     CGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGA                                                                          >  SRR4302537.703996/1‑94 (MQ=60)

                      GATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGCTCAATTGTCTGAC                                                                         >  SRR4302537.4854177/1‑94 (MQ=60)

                      GATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGAC                                                                         >  SRR4302537.6411296/1‑94 (MQ=60)

                      GATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCGCATGAGGCTTACCGATCAATTGTCTGAC                                                                         >  SRR4302537.6261762/1‑94 (MQ=60)

                       ATCCATTGCGGCGAGGGGTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACG                                                                        >  SRR4302537.2311897/1‑94 (MQ=60)

                        TCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGT                                                                       >  SRR4302537.2430667/1‑94 (MQ=60)

                         CCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTT                                                                      <  SRR4302537.1922440/94‑1 (MQ=60)

                          CATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTT                                                                     <  SRR4302537.31442/94‑1 (MQ=60)

                           ATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTT                                                                    >  SRR4302537.4539762/1‑94 (MQ=60)

                           ATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTT                                                                    >  SRR4302537.1105439/1‑94 (MQ=60)

                            TTGCGGCGAGGGCTTGTGCGCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTG                                                                   <  SRR4302537.752886/94‑1 (MQ=60)

                             TGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGCCCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGA                                                                  <  SRR4302537.3441044/94‑1 (MQ=60)

                             TGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGA                                                                  <  SRR4302537.2263318/94‑1 (MQ=60)

                             TGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGA                                                                  <  SRR4302537.2256051/94‑1 (MQ=60)

                               CGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATG                                                                >  SRR4302537.1980303/1‑94 (MQ=60)

                               CGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATG                                                                <  SRR4302537.2612786/94‑1 (MQ=60)

                                  CGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTC                                                             >  SRR4302537.104587/1‑94 (MQ=60)

                                  CGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTC                                                             >  SRR4302537.3141946/1‑94 (MQ=60)

                                   GAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCG                                                            <  SRR4302537.1777212/94‑1 (MQ=60)

                                   GAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCG                                                            <  SRR4302537.739672/94‑1 (MQ=60)

                                   GAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCG                                                            <  SRR4302537.1699134/94‑1 (MQ=60)

                                    AGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGT                                                           >  SRR4302537.214838/1‑94 (MQ=60)

                                    AGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGT                                                           >  SRR4302537.3099931/1‑94 (MQ=60)

                                     GGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTC                                                          >  SRR4302537.1203676/1‑94 (MQ=60)

                                      GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCC                                                         >  SRR4302537.6272171/1‑94 (MQ=60)

                                      GGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCC                                                         >  SRR4302537.6435085/1‑94 (MQ=60)

                                       GCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCG                                                        <  SRR4302537.1080764/94‑1 (MQ=60)

                                       GCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCG                                                        >  SRR4302537.1891943/1‑94 (MQ=60)

                                        CTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGG                                                       <  SRR4302537.5264025/94‑1 (MQ=60)

                                         TTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGA                                                      >  SRR4302537.2237732/1‑94 (MQ=60)

                                           TTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATG                                                    <  SRR4302537.5670685/94‑1 (MQ=60)

                                            TTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGT                                                   <  SRR4302537.2561151/94‑1 (MQ=60)

                                             TCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTT                                                  <  SRR4302537.4867935/94‑1 (MQ=60)

                                             TCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTT                                                  <  SRR4302537.1830012/94‑1 (MQ=60)

                                             TCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTT                                                  >  SRR4302537.1176457/1‑94 (MQ=60)

                                               CCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCC                                                <  SRR4302537.1081509/94‑1 (MQ=60)

                                               CCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCC                                                <  SRR4302537.435862/94‑1 (MQ=60)

                                               CCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCC                                                <  SRR4302537.941523/94‑1 (MQ=60)

                                                CGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCA                                               >  SRR4302537.774190/1‑94 (MQ=60)

                                                CGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCA                                               >  SRR4302537.5295347/1‑94 (MQ=60)

                                                 GATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCAT                                              >  SRR4302537.5822934/1‑94 (MQ=60)

                                                 GATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCAT                                              >  SRR4302537.2521578/1‑94 (MQ=60)

                                                  ATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATT                                             >  SRR4302537.3361147/1‑94 (MQ=60)

                                                    CGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTG                                           <  SRR4302537.4778687/94‑1 (MQ=60)

                                                     GCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGA                                          >  SRR4302537.1438394/1‑94 (MQ=60)

                                                      CCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGAT                                         >  SRR4302537.3514602/1‑94 (MQ=60)

                                                       CCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATA                                        <  SRR4302537.1111662/94‑1 (MQ=60)

                                                       CCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATA                                        <  SRR4302537.3867986/94‑1 (MQ=60)

                                                       CCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATA                                        >  SRR4302537.5231371/1‑94 (MQ=60)

                                                        CAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAG                                       <  SRR4302537.2087391/94‑1 (MQ=60)

                                                        CAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAG                                       <  SRR4302537.5358524/94‑1 (MQ=60)

                                                        CAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAG                                       >  SRR4302537.2008194/1‑94 (MQ=60)

                                                          ACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCT                                     <  SRR4302537.6069331/94‑1 (MQ=60)

                                                          ACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCT                                     <  SRR4302537.964731/94‑1 (MQ=60)

                                                            AGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGA                                   >  SRR4302537.60515/1‑94 (MQ=60)

                                                            AGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGA                                   >  SRR4302537.3050245/1‑94 (MQ=60)

                                                            AGGAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGA                                   >  SRR4302537.3452152/1‑94 (MQ=60)

                                                              GAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAAC                                 >  SRR4302537.1225565/1‑94 (MQ=60)

                                                              GAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAAC                                 <  SRR4302537.3618155/94‑1 (MQ=60)

                                                              GAAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAAC                                 <  SRR4302537.3100993/94‑1 (MQ=60)

                                                               AAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACA                                >  SRR4302537.1924021/1‑94 (MQ=60)

                                                               AAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACA                                >  SRR4302537.3410284/1‑94 (MQ=60)

                                                               AAGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACA                                <  SRR4302537.4925599/94‑1 (MQ=60)

                                                                AGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACAT                               <  SRR4302537.6304507/94‑1 (MQ=60)

                                                                AGACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACAT                               >  SRR4302537.5463195/1‑94 (MQ=60)

                                                                 GACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATC                              >  SRR4302537.2298394/1‑94 (MQ=60)

                                                                 GACCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATC                              >  SRR4302537.501526/1‑94 (MQ=60)

                                                                   CCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAG                            <  SRR4302537.1559458/94‑1 (MQ=60)

                                                                   CCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAG                            <  SRR4302537.5360810/94‑1 (MQ=60)

                                                                   CCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAG                            <  SRR4302537.3961626/94‑1 (MQ=60)

                                                                   CCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAG                            <  SRR4302537.6265842/94‑1 (MQ=60)

                                                                   CCGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAG                            <  SRR4302537.2187134/94‑1 (MQ=60)

                                                                    CGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                           >  SRR4302537.4894181/1‑94 (MQ=60)

                                                                    CGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                           >  SRR4302537.4760247/1‑94 (MQ=60)

                                                                    CGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                           <  SRR4302537.4424432/94‑1 (MQ=60)

                                                                    CGGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGG                           <  SRR4302537.2010238/94‑1 (MQ=60)

                                                                     GGCCCGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGC                          <  SRR4302537.3987418/94‑1 (MQ=60)

                                                                     GGCACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGC                          >  SRR4302537.35259/1‑94 (MQ=60)

                                                                       CACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAG                        >  SRR4302537.3597274/1‑94 (MQ=60)

                                                                       CACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAG                        <  SRR4302537.1889950/94‑1 (MQ=60)

                                                                       CACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAG                        >  SRR4302537.1194326/1‑94 (MQ=60)

                                                                       CACGTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAG                        >  SRR4302537.2841592/1‑94 (MQ=60)

                                                                          GTTTTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCA                     <  SRR4302537.2636017/94‑1 (MQ=60)

                                                                             TTGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATG                  <  SRR4302537.4254805/94‑1 (MQ=60)

                                                                              TGTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGG                 <  SRR4302537.4350289/94‑1 (MQ=60)

                                                                               GTTGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGC                >  SRR4302537.764409/1‑94 (MQ=60)

                                                                                TTGGCGCTCATGAGGCTTACCAATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCT               <  SRR4302537.11675/94‑1 (MQ=60)

                                                                                 TGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTT              <  SRR4302537.3341959/94‑1 (MQ=60)

                                                                                 TGGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTT              >  SRR4302537.3635730/1‑94 (MQ=60)

                                                                                  GGCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTC             <  SRR4302537.4711237/94‑1 (MQ=60)

                                                                                   GCGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCG            <  SRR4302537.730714/94‑1 (MQ=60)

                                                                                    CGCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGT           >  SRR4302537.3351816/1‑94 (MQ=60)

                                                                                     GCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTT          <  SRR4302537.3309609/94‑1 (MQ=60)

                                                                                     GCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTT          >  SRR4302537.3907690/1‑94 (MQ=60)

                                                                                     GCTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTT          >  SRR4302537.3692499/1‑94 (MQ=60)

                                                                                      CTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTT         <  SRR4302537.2807315/94‑1 (MQ=60)

                                                                                      CTCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTT         >  SRR4302537.835371/1‑94 (MQ=60)

                                                                                       TCATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTG        >  SRR4302537.6505170/1‑94 (MQ=60)

                                                                                        CATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGA       >  SRR4302537.1746166/1‑94 (MQ=60)

                                                                                        CATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGA       >  SRR4302537.3455577/1‑94 (MQ=60)

                                                                                        CATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGA       >  SRR4302537.5250262/1‑94 (MQ=60)

                                                                                         ATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAA      >  SRR4302537.1160019/1‑94 (MQ=60)

                                                                                         ATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAA      <  SRR4302537.1828156/94‑1 (MQ=60)

                                                                                         ATGAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCCTCGTTTGAA      >  SRR4302537.1476127/1‑94 (MQ=60)

                                                                                           GAGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGA    <  SRR4302537.2110400/94‑1 (MQ=60)

                                                                                            AGGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAG   <  SRR4302537.3271167/94‑1 (MQ=60)

                                                                                            AGGCTTACCGATCAATTGTCTGAAGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAG   <  SRR4302537.1248543/94‑1 (MQ=60)

                                                                                             GGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGA  <  SRR4302537.6298055/94‑1 (MQ=60)

                                                                                             GGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGA  <  SRR4302537.928468/94‑1 (MQ=60)

TCGACAAGCTCCAGCAGGTCGCGATCCATTGCGGCGAGGGCTTTTTCCCGATCGCCCAACAGGAAGACCGGCACGTTTTGTTGGCGCTCATGAAGCTTACCGATCAATTGTCTGACGTTTTGATGTTCGTCCGGATGTTCCATTTGATAGCTGAACATCAGGCAGTCAATGGCTTCGTTTGAAGAGA  >  NC_000913/4337771‑4337957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`